| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is pqqL [H]
Identifier: 120597510
GI number: 120597510
Start: 749741
End: 752587
Strand: Direct
Name: pqqL [H]
Synonym: Sputw3181_0679
Alternate gene names: 120597510
Gene position: 749741-752587 (Clockwise)
Preceding gene: 120597509
Following gene: 120597511
Centisome position: 15.92
GC content: 47.98
Gene sequence:
>2847_bases GTGCGAATTTTAATGAACAATTTCAAGGTAATTCGTTTTGTACGTCAGTGGTTACTGCTGGCGCTTTTGAGTATGGCGTT GCCACTGCAGGCGAGCGAAGATCCGCTGTGGATGGGGACTGCTGATTTACCTATGAGCGGACGCATCCATACTGGTGAAC TTACTAATGGCATGCGTTATTTATTGGTGAGCAATAAGACGCCGGAGCAGGCGGTCATAGTGCGGATGCGGGTGGATGTG GGCTCTTTGGTGGAATCAGATACCGAGCAAGGGTTAGTTCACTTTCTTGAACATATGGCCTTTAATGGCTCGACCGGATT GGCCGCGGGGGAGATGATCCCTACTTTGCAGCGCCTTGGCCTGAGTTTTGGCGCCGATACCAATGCCGTGACAGAGTTTC AGCAGACGGTCTATCAATTTAACTTGCCGAGTAATAGCCAAGATAAAGTCGATACCGCTTTGTTTTTAATGCGAGAAATT GCCAGTAATCTATTACTCGATCCTGCGCTAATTGAGCGTGAAAAAGCGGTGGTGTTGTCTGAGCTGCGTGAACGTAGCGG TGCGGATCTTGAGAATTACCGTCATCAATTACAGTTTTTAATGCCAAACACATTGTTGTCAAAGCGCTTCCCTGTGGGTG AGGCGAACAGTATCAGTAATGCCAATCGCGAGGCGTTGCTGTCTTTATATCAGCGTTTTTATACACCCTCACGCACCACT TTAATTGTCGTGGGTGATATCGAGGTGGCCGCGGTAGAACAAAAGATAAAAAAACAGTTTGCCAGTTGGAAAGCCGCGCC TTTGGTCGCTAAAACCAAGGAACAAGCTATTGGTACTGTCGCAGAGCGCCAAAGTGTCGATGCGGCGGCATTTTTTGATC CAAGTCTGTCAACGTCAGTTTCCCTTGGCATGCTAAAACCCATCTCAGCGATTACCGATAGCCCTGATGTGCGGGAGCAG GAAATGTTGCTCGAGCTTGCCCACGGCATCTTGTATCGTCGTATGGAGTCGCAATTACTGCATAGCCAAGGTTTATATGG TGTAAACCTGCAGGTTGGGCCGCAGTTTGATATTGCCTATGGCACACAAATGAGCCTAGGTACGCAGGAAAATAACTGGC AAGAGGGAATCGCACTCTTGGAGAAAACCCTGCGTCAAGCAAAAGAGTTTGGTTTTAGCCAGCAGGAAATTGACCAGCAA ATCAAACGTATGCATAAGGGATATCAGCTAAGTGTCGCGGGTAGCAGTACCATTCACAGTGTGAATATTGCCGAGAGTCT AGTGTATTCGGTGGCGGGCAATCGCGTCCCTGTCGAACCCGATTGGCAGCTCGCATTTTTTGAAAAAATAATGCCAACAG TGACACCGCAAAAGCTAAGCCAAGTGTTTAATCAAACATGGAACGCCACGCCGTATTTGTATCTGACGAGCAATAAGCCC ATTGAAAATGCTGAAAAACAGCTTATCGCCAGCTACGAGAAAAGCCGTAAACAAGCGGTGAGCGCACCAGCAATCAAGGC GATTGATGAGTTTGCTTATACTCAGTTTGGCGAGCAAGGCAAGTTAGTTGCCGACAGTCGCGATAAGGAAACGGGGATTC GCCAACTGCAATTTGCCAATGGCGTGCGCCTTAATCTTAAGCCTACCAACTTTAACAAAGGCACCACATTGGTCAGCCTA AACATTGGCTTTGGTGAAGTGCCATTCCCTGAGTTGGATGGTTTGTCTTATCTGTTTAACAGTGCGTTTGTGCAGGGTGG GCTCAAGGCCCATGATTATGACAGTCTGCAGGATATTTTTGCTGGGCAAGATATTTCCATCAACTTAGGCCTGCGTGAGC AAAGTTTTGGCGGCGAGATTAGCACTAATGCCGCAGAGCTACGCACGCAGCTTGGCTTAATGACGGCTTATTTAATTGAG CCAGGTATGGATAAGCAGGCTGAGCAATTGTTTCGTGAACAAGTGATTGCCGAGCAACAAAGTATTCATAGCAACCCACA ATCTGAGTTTTCTAATCAGTTTGCCCGTATCTCTCATAATGGTGATAAACGCTATGGTTATGGTGAGCCTGAAGAAATTC TCAAACGTCACTTTGGAGAATTAGCGCCGAGTTTCCATTCGGCCGTCGAGCAAGGGGCGATTGAACTCGCTATTGTGGGC GCTTTTGACGAAGCGAGTGCCATTGCTGCTGTGGCCGAAACGCTTGGCGCCATTAAGCGTAGCCCTATTGCAAATGGTCA GACGATACTACCTGTGTTTCCACAAGTGCCCGTTCAGAAAACATTAACCCATTATGGTCAACTGGATATGGCGGCACTTG CCATGGTTTGGCCTACAACGGATATGACTCACTTGAGTCAACATGTGGGATTGGGTCTGCTGGAGCAAGTGCTAAGCATT CTATTAACGGAAAACGTGAGGGAGAAAGCGGGCGCGAGTTATTCGCCATCGGCCTTTTCTTACAACGATTTCAATGCCAG CGGTTATGGTTACTTAGGTTTGTTTAGCGTGACGACTCAAGCTATGTTGCCAACGGTTGCCGAGTATTTCACCGCCGCAG TTAAGCAAGTTAAAGCGCCTTCGGGGATCAGTGAGGACTTACTTAATCGAGCCCGCCAACCAGTACTTGAGTGGATGCAA GCTGCGCCGCAAACCAATGGTTTTTGGTTAGATCTCACCTCAACCGCCCAGAGTCATCCCGGTCGTTTTACTGCCTTTAA ACAAAGGCAAGCGTTAGCGCAGCAGATGACAGTTGCAGAACTTAATAAATTGGCGCAGCAATATCTGCAAGACGATAGCA GTTTAATGATCCAAGTCCTTCCTGCATCGGCAGAACCTCAGCAATGA
Upstream 100 bases:
>100_bases ATTTTGTGACTTAAAGTGCTTTAAGTACTATAGTGAAAGCTTATTTTATCTAAAACGTAGGTGTGCGCTTCCTAGGTTTT TGTTTGATTTTGGGGGAAAA
Downstream 100 bases:
>100_bases GTGTTGGGCTCATAGAATAGTAGACTGATCATTCACCGACATATCCCCTGTGGTAGCAAACCGCAGGGGATATTTTTCTA CCTCTTTCTTCCTCTATCTT
Product: peptidase M16 domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 948; Mature: 948
Protein sequence:
>948_residues MRILMNNFKVIRFVRQWLLLALLSMALPLQASEDPLWMGTADLPMSGRIHTGELTNGMRYLLVSNKTPEQAVIVRMRVDV GSLVESDTEQGLVHFLEHMAFNGSTGLAAGEMIPTLQRLGLSFGADTNAVTEFQQTVYQFNLPSNSQDKVDTALFLMREI ASNLLLDPALIEREKAVVLSELRERSGADLENYRHQLQFLMPNTLLSKRFPVGEANSISNANREALLSLYQRFYTPSRTT LIVVGDIEVAAVEQKIKKQFASWKAAPLVAKTKEQAIGTVAERQSVDAAAFFDPSLSTSVSLGMLKPISAITDSPDVREQ EMLLELAHGILYRRMESQLLHSQGLYGVNLQVGPQFDIAYGTQMSLGTQENNWQEGIALLEKTLRQAKEFGFSQQEIDQQ IKRMHKGYQLSVAGSSTIHSVNIAESLVYSVAGNRVPVEPDWQLAFFEKIMPTVTPQKLSQVFNQTWNATPYLYLTSNKP IENAEKQLIASYEKSRKQAVSAPAIKAIDEFAYTQFGEQGKLVADSRDKETGIRQLQFANGVRLNLKPTNFNKGTTLVSL NIGFGEVPFPELDGLSYLFNSAFVQGGLKAHDYDSLQDIFAGQDISINLGLREQSFGGEISTNAAELRTQLGLMTAYLIE PGMDKQAEQLFREQVIAEQQSIHSNPQSEFSNQFARISHNGDKRYGYGEPEEILKRHFGELAPSFHSAVEQGAIELAIVG AFDEASAIAAVAETLGAIKRSPIANGQTILPVFPQVPVQKTLTHYGQLDMAALAMVWPTTDMTHLSQHVGLGLLEQVLSI LLTENVREKAGASYSPSAFSYNDFNASGYGYLGLFSVTTQAMLPTVAEYFTAAVKQVKAPSGISEDLLNRARQPVLEWMQ AAPQTNGFWLDLTSTAQSHPGRFTAFKQRQALAQQMTVAELNKLAQQYLQDDSSLMIQVLPASAEPQQ
Sequences:
>Translated_948_residues MRILMNNFKVIRFVRQWLLLALLSMALPLQASEDPLWMGTADLPMSGRIHTGELTNGMRYLLVSNKTPEQAVIVRMRVDV GSLVESDTEQGLVHFLEHMAFNGSTGLAAGEMIPTLQRLGLSFGADTNAVTEFQQTVYQFNLPSNSQDKVDTALFLMREI ASNLLLDPALIEREKAVVLSELRERSGADLENYRHQLQFLMPNTLLSKRFPVGEANSISNANREALLSLYQRFYTPSRTT LIVVGDIEVAAVEQKIKKQFASWKAAPLVAKTKEQAIGTVAERQSVDAAAFFDPSLSTSVSLGMLKPISAITDSPDVREQ EMLLELAHGILYRRMESQLLHSQGLYGVNLQVGPQFDIAYGTQMSLGTQENNWQEGIALLEKTLRQAKEFGFSQQEIDQQ IKRMHKGYQLSVAGSSTIHSVNIAESLVYSVAGNRVPVEPDWQLAFFEKIMPTVTPQKLSQVFNQTWNATPYLYLTSNKP IENAEKQLIASYEKSRKQAVSAPAIKAIDEFAYTQFGEQGKLVADSRDKETGIRQLQFANGVRLNLKPTNFNKGTTLVSL NIGFGEVPFPELDGLSYLFNSAFVQGGLKAHDYDSLQDIFAGQDISINLGLREQSFGGEISTNAAELRTQLGLMTAYLIE PGMDKQAEQLFREQVIAEQQSIHSNPQSEFSNQFARISHNGDKRYGYGEPEEILKRHFGELAPSFHSAVEQGAIELAIVG AFDEASAIAAVAETLGAIKRSPIANGQTILPVFPQVPVQKTLTHYGQLDMAALAMVWPTTDMTHLSQHVGLGLLEQVLSI LLTENVREKAGASYSPSAFSYNDFNASGYGYLGLFSVTTQAMLPTVAEYFTAAVKQVKAPSGISEDLLNRARQPVLEWMQ AAPQTNGFWLDLTSTAQSHPGRFTAFKQRQALAQQMTVAELNKLAQQYLQDDSSLMIQVLPASAEPQQ >Mature_948_residues MRILMNNFKVIRFVRQWLLLALLSMALPLQASEDPLWMGTADLPMSGRIHTGELTNGMRYLLVSNKTPEQAVIVRMRVDV GSLVESDTEQGLVHFLEHMAFNGSTGLAAGEMIPTLQRLGLSFGADTNAVTEFQQTVYQFNLPSNSQDKVDTALFLMREI ASNLLLDPALIEREKAVVLSELRERSGADLENYRHQLQFLMPNTLLSKRFPVGEANSISNANREALLSLYQRFYTPSRTT LIVVGDIEVAAVEQKIKKQFASWKAAPLVAKTKEQAIGTVAERQSVDAAAFFDPSLSTSVSLGMLKPISAITDSPDVREQ EMLLELAHGILYRRMESQLLHSQGLYGVNLQVGPQFDIAYGTQMSLGTQENNWQEGIALLEKTLRQAKEFGFSQQEIDQQ IKRMHKGYQLSVAGSSTIHSVNIAESLVYSVAGNRVPVEPDWQLAFFEKIMPTVTPQKLSQVFNQTWNATPYLYLTSNKP IENAEKQLIASYEKSRKQAVSAPAIKAIDEFAYTQFGEQGKLVADSRDKETGIRQLQFANGVRLNLKPTNFNKGTTLVSL NIGFGEVPFPELDGLSYLFNSAFVQGGLKAHDYDSLQDIFAGQDISINLGLREQSFGGEISTNAAELRTQLGLMTAYLIE PGMDKQAEQLFREQVIAEQQSIHSNPQSEFSNQFARISHNGDKRYGYGEPEEILKRHFGELAPSFHSAVEQGAIELAIVG AFDEASAIAAVAETLGAIKRSPIANGQTILPVFPQVPVQKTLTHYGQLDMAALAMVWPTTDMTHLSQHVGLGLLEQVLSI LLTENVREKAGASYSPSAFSYNDFNASGYGYLGLFSVTTQAMLPTVAEYFTAAVKQVKAPSGISEDLLNRARQPVLEWMQ AAPQTNGFWLDLTSTAQSHPGRFTAFKQRQALAQQMTVAELNKLAQQYLQDDSSLMIQVLPASAEPQQ
Specific function: Unknown
COG id: COG0612
COG function: function code R; Predicted Zn-dependent peptidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M16 family [H]
Homologues:
Organism=Escherichia coli, GI1787770, Length=919, Percent_Identity=22.9597388465724, Blast_Score=171, Evalue=3e-43,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011249 - InterPro: IPR011237 - InterPro: IPR011765 - InterPro: IPR001431 - InterPro: IPR007863 [H]
Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]
EC number: 3.4.99.- [C]
Molecular weight: Translated: 104843; Mature: 104843
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRILMNNFKVIRFVRQWLLLALLSMALPLQASEDPLWMGTADLPMSGRIHTGELTNGMRY CEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCEECCCCCCCEEE LLVSNKTPEQAVIVRMRVDVGSLVESDTEQGLVHFLEHMAFNGSTGLAAGEMIPTLQRLG EEEECCCCCCEEEEEEECCHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC LSFGADTNAVTEFQQTVYQFNLPSNSQDKVDTALFLMREIASNLLLDPALIEREKAVVLS CCCCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH ELRERSGADLENYRHQLQFLMPNTLLSKRFPVGEANSISNANREALLSLYQRFYTPSRTT HHHHHCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCE LIVVGDIEVAAVEQKIKKQFASWKAAPLVAKTKEQAIGTVAERQSVDAAAFFDPSLSTSV EEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCCC SLGMLKPISAITDSPDVREQEMLLELAHGILYRRMESQLLHSQGLYGVNLQVGPQFDIAY HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEE GTQMSLGTQENNWQEGIALLEKTLRQAKEFGFSQQEIDQQIKRMHKGYQLSVAGSSTIHS CCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCCCEEE VNIAESLVYSVAGNRVPVEPDWQLAFFEKIMPTVTPQKLSQVFNQTWNATPYLYLTSNKP HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCC IENAEKQLIASYEKSRKQAVSAPAIKAIDEFAYTQFGEQGKLVADSRDKETGIRQLQFAN HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCC GVRLNLKPTNFNKGTTLVSLNIGFGEVPFPELDGLSYLFNSAFVQGGLKAHDYDSLQDIF CEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH AGQDISINLGLREQSFGGEISTNAAELRTQLGLMTAYLIEPGMDKQAEQLFREQVIAEQQ CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH SIHSNPQSEFSNQFARISHNGDKRYGYGEPEEILKRHFGELAPSFHSAVEQGAIELAIVG HHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHCCCEEEEEEE AFDEASAIAAVAETLGAIKRSPIANGQTILPVFPQVPVQKTLTHYGQLDMAALAMVWPTT CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCHHHHHHHHHCCCC DMTHLSQHVGLGLLEQVLSILLTENVREKAGASYSPSAFSYNDFNASGYGYLGLFSVTTQ CHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH AMLPTVAEYFTAAVKQVKAPSGISEDLLNRARQPVLEWMQAAPQTNGFWLDLTSTAQSHP HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC GRFTAFKQRQALAQQMTVAELNKLAQQYLQDDSSLMIQVLPASAEPQQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC >Mature Secondary Structure MRILMNNFKVIRFVRQWLLLALLSMALPLQASEDPLWMGTADLPMSGRIHTGELTNGMRY CEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCEECCCCCCCEEE LLVSNKTPEQAVIVRMRVDVGSLVESDTEQGLVHFLEHMAFNGSTGLAAGEMIPTLQRLG EEEECCCCCCEEEEEEECCHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC LSFGADTNAVTEFQQTVYQFNLPSNSQDKVDTALFLMREIASNLLLDPALIEREKAVVLS CCCCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH ELRERSGADLENYRHQLQFLMPNTLLSKRFPVGEANSISNANREALLSLYQRFYTPSRTT HHHHHCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCE LIVVGDIEVAAVEQKIKKQFASWKAAPLVAKTKEQAIGTVAERQSVDAAAFFDPSLSTSV EEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCCC SLGMLKPISAITDSPDVREQEMLLELAHGILYRRMESQLLHSQGLYGVNLQVGPQFDIAY HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEE GTQMSLGTQENNWQEGIALLEKTLRQAKEFGFSQQEIDQQIKRMHKGYQLSVAGSSTIHS CCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEECCCCCEEE VNIAESLVYSVAGNRVPVEPDWQLAFFEKIMPTVTPQKLSQVFNQTWNATPYLYLTSNKP HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEECCCC IENAEKQLIASYEKSRKQAVSAPAIKAIDEFAYTQFGEQGKLVADSRDKETGIRQLQFAN HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCC GVRLNLKPTNFNKGTTLVSLNIGFGEVPFPELDGLSYLFNSAFVQGGLKAHDYDSLQDIF CEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH AGQDISINLGLREQSFGGEISTNAAELRTQLGLMTAYLIEPGMDKQAEQLFREQVIAEQQ CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH SIHSNPQSEFSNQFARISHNGDKRYGYGEPEEILKRHFGELAPSFHSAVEQGAIELAIVG HHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHCCCEEEEEEE AFDEASAIAAVAETLGAIKRSPIANGQTILPVFPQVPVQKTLTHYGQLDMAALAMVWPTT CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCHHHHHHHHHCCCC DMTHLSQHVGLGLLEQVLSILLTENVREKAGASYSPSAFSYNDFNASGYGYLGLFSVTTQ CHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH AMLPTVAEYFTAAVKQVKAPSGISEDLLNRARQPVLEWMQAAPQTNGFWLDLTSTAQSHP HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC GRFTAFKQRQALAQQMTVAELNKLAQQYLQDDSSLMIQVLPASAEPQQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]