| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is phoB [C]
Identifier: 120597502
GI number: 120597502
Start: 737791
End: 739425
Strand: Direct
Name: phoB [C]
Synonym: Sputw3181_0671
Alternate gene names: 120597502
Gene position: 737791-739425 (Clockwise)
Preceding gene: 120597501
Following gene: 120597504
Centisome position: 15.67
GC content: 43.91
Gene sequence:
>1635_bases ATGGGAATGGCTACTATCCCATCGCTACATGTGTCTATTGGAGAAGCACTGTTGTCATCATTTTCTTGGGTTCTTTCTCT CACTATCATCTTGGTTTTATCTTTCTATTTGGCCAAGTTAACGCGCACATACAAAGCAAAGGTGAAGTCATTTCAGGTTG AACTTACTCAGGCTAATAAAACAATACAATCACTTACACAACAACGTGAATGTGAACAGCGCACCTTTGGTCAGCTATTT ACTGAAATAACAAAAAATGTCACTTGGTTAGCCCCCTATATTGCCAACACTCAGACCCATACTGATGAGATGAACGCATT ATTACTGCGCATCAATCAGTTACTCGAGAGTACAAGGCAATGGAATGAGTCATCTCGCCAGATGTTATCCTCACCATTTT TGTTGCAACCTTGGCTAAAAAATCAGTTAAGTTTCGAAAAGGCGAAGAGCCAACAACCATTACCCATTCATATCAGTGAG ATCCCCGATCTGCTTGTTCAAACCCATCTTGAACTGTTAGAAAAAGTCTTCAGCAAGTTTTGTCAGGACATCAGACAATC GACGGGCATAGCAGGCTATGTACTTGAGATAGAGTCAAAGCAAGGGCTTCGCTTGACTTTAACGGGCAAAGTCGAGGCTA CGCGGGAAGAATATGCCGATGACAGCTACCTGCTGCTAAAAAAACAGGTGGAAGAAAATGGGGGGGAACTCTGTTGCCTG CATAGCTCACAATCAATAGCGCAATATACGCTATGCCTACCAGCGACTGTTTATGAATTACCGCAATTTACGCCGGATTT CAGATATCTACAGCACCATGTTGCCGATGAGAGCAAAGCTAAAGTGTTGATCGTCGAGAGCGACCCTGAGTTTATGGATT GGCTTTATTACCACTTAGCGGCGGATTTTCGGCTCACTCTTTGCCAAACATGGCAAGGAGCGCAATATGAGTTAGATGAA CAGGGCGCAGAATTAATCCTATGTGATACCCAGTTAAGTGATGGCGATGCGGCCAGTTGGTTGTCAACACTCAAACATCA ACCTGAATATACCGCTATTCCGTTTGTGATGTTAACTGCGGTTGATGATCCGCAGCAACGCTTACAGGCATGGCAGTGTT ATGCCGATGATTACGTCAGCAAAAACAGCGATCCCGGATTATTGGTTGTGAGGTTAAATGCTTTAATTGAAAATAGGCGC CTTGTGCAGCAGCAAATGTTATCGCTTTCCTTAGCGATAAATTCTGTGCAAGCATCCACTTCAACGCCTGTGCTAAGTAC AGTAGAAACCCTCGATGAACAATTCGCTAAACGATTAAGGTTAGTGATCGATCAACACATTACTACACAGGAATTGACGG TTGAGTTTGTCGCACAGCAGTTTCATACCAGTAGCCGCTCATTGCAGCGGCGGGTACAAAGCGTATTTGGTTTGTCATAT TCCCAATATTTAAAGCAAACCCAATTACAAATCGCTAAGGATGCTTTAGTTGCGGGGCATACCGTTAAAGAAGCCGCCTA CTATGCAGGCTTTACCAGTCAAAATTACTTTGGCCGCGTCTTTAGAGCGGAATATGGGGTAACGCCCAGCCAATTTAAAA AGGATGCAAGCACTAAACCGCCAAGCTTGGCCTAA
Upstream 100 bases:
>100_bases ATGTTGAAGTGCTTAAGTGGTGTAGTTGAGCGATTCGTTGATATCAAAATGTGATATTGAACTACTAAAGTTGATTGCCA TAAATAAAGAAATCCTCACC
Downstream 100 bases:
>100_bases TTTTTTTTAATTGCATAGCCTCACCTAAGAGGCGATCAATGACTTGTCGATCGCTTTCTTCAGAGTGGTGTTGAACACAA AAAGTGCTGATAGCAAGTGA
Product: response regulator receiver protein
Products: NA
Alternate protein names: Two-Component System Sensor Histidine Kinase/Response; Integral Membrane Sensor Hybrid Histidine Kinase; Two Component Transcriptional Regulator AraC Family; Two-Component System Sensor Kinase/Response Regulator; Response Regulator Receiver; Sensor Histidine Kinase/Response Regulator; Two-Component System Sensor Histidine Kinase; Sensor Histidine Kinase; Response Regulator Receiver Domain Protein; Two Component Transcriptional Regulator Arac Family; Two-Component Sensor Histidine Kinase; Response Regulator Receiver Sensor Hybrid Histidine Kinase; Two Component AraC Family Transcriptional Regulator; Response Regulator Receiver Protein
Number of amino acids: Translated: 544; Mature: 543
Protein sequence:
>544_residues MGMATIPSLHVSIGEALLSSFSWVLSLTIILVLSFYLAKLTRTYKAKVKSFQVELTQANKTIQSLTQQRECEQRTFGQLF TEITKNVTWLAPYIANTQTHTDEMNALLLRINQLLESTRQWNESSRQMLSSPFLLQPWLKNQLSFEKAKSQQPLPIHISE IPDLLVQTHLELLEKVFSKFCQDIRQSTGIAGYVLEIESKQGLRLTLTGKVEATREEYADDSYLLLKKQVEENGGELCCL HSSQSIAQYTLCLPATVYELPQFTPDFRYLQHHVADESKAKVLIVESDPEFMDWLYYHLAADFRLTLCQTWQGAQYELDE QGAELILCDTQLSDGDAASWLSTLKHQPEYTAIPFVMLTAVDDPQQRLQAWQCYADDYVSKNSDPGLLVVRLNALIENRR LVQQQMLSLSLAINSVQASTSTPVLSTVETLDEQFAKRLRLVIDQHITTQELTVEFVAQQFHTSSRSLQRRVQSVFGLSY SQYLKQTQLQIAKDALVAGHTVKEAAYYAGFTSQNYFGRVFRAEYGVTPSQFKKDASTKPPSLA
Sequences:
>Translated_544_residues MGMATIPSLHVSIGEALLSSFSWVLSLTIILVLSFYLAKLTRTYKAKVKSFQVELTQANKTIQSLTQQRECEQRTFGQLF TEITKNVTWLAPYIANTQTHTDEMNALLLRINQLLESTRQWNESSRQMLSSPFLLQPWLKNQLSFEKAKSQQPLPIHISE IPDLLVQTHLELLEKVFSKFCQDIRQSTGIAGYVLEIESKQGLRLTLTGKVEATREEYADDSYLLLKKQVEENGGELCCL HSSQSIAQYTLCLPATVYELPQFTPDFRYLQHHVADESKAKVLIVESDPEFMDWLYYHLAADFRLTLCQTWQGAQYELDE QGAELILCDTQLSDGDAASWLSTLKHQPEYTAIPFVMLTAVDDPQQRLQAWQCYADDYVSKNSDPGLLVVRLNALIENRR LVQQQMLSLSLAINSVQASTSTPVLSTVETLDEQFAKRLRLVIDQHITTQELTVEFVAQQFHTSSRSLQRRVQSVFGLSY SQYLKQTQLQIAKDALVAGHTVKEAAYYAGFTSQNYFGRVFRAEYGVTPSQFKKDASTKPPSLA >Mature_543_residues GMATIPSLHVSIGEALLSSFSWVLSLTIILVLSFYLAKLTRTYKAKVKSFQVELTQANKTIQSLTQQRECEQRTFGQLFT EITKNVTWLAPYIANTQTHTDEMNALLLRINQLLESTRQWNESSRQMLSSPFLLQPWLKNQLSFEKAKSQQPLPIHISEI PDLLVQTHLELLEKVFSKFCQDIRQSTGIAGYVLEIESKQGLRLTLTGKVEATREEYADDSYLLLKKQVEENGGELCCLH SSQSIAQYTLCLPATVYELPQFTPDFRYLQHHVADESKAKVLIVESDPEFMDWLYYHLAADFRLTLCQTWQGAQYELDEQ GAELILCDTQLSDGDAASWLSTLKHQPEYTAIPFVMLTAVDDPQQRLQAWQCYADDYVSKNSDPGLLVVRLNALIENRRL VQQQMLSLSLAINSVQASTSTPVLSTVETLDEQFAKRLRLVIDQHITTQELTVEFVAQQFHTSSRSLQRRVQSVFGLSYS QYLKQTQLQIAKDALVAGHTVKEAAYYAGFTSQNYFGRVFRAEYGVTPSQFKKDASTKPPSLA
Specific function: This Protein Is A Positive Regulator For The Phosphate Regulon. Transcription Of This Operon Is Positively Regulated By Phob And Phor When Phosphate Is Limited. [C]
COG id: COG2207
COG function: function code K; AraC-type DNA-binding domain-containing proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61817; Mature: 61686
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGMATIPSLHVSIGEALLSSFSWVLSLTIILVLSFYLAKLTRTYKAKVKSFQVELTQANK CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHH TIQSLTQQRECEQRTFGQLFTEITKNVTWLAPYIANTQTHTDEMNALLLRINQLLESTRQ HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHH WNESSRQMLSSPFLLQPWLKNQLSFEKAKSQQPLPIHISEIPDLLVQTHLELLEKVFSKF HCHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH CQDIRQSTGIAGYVLEIESKQGLRLTLTGKVEATREEYADDSYLLLKKQVEENGGELCCL HHHHHHCCCCEEEEEEEECCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHCCCCCEEEE HSSQSIAQYTLCLPATVYELPQFTPDFRYLQHHVADESKAKVLIVESDPEFMDWLYYHLA ECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHH ADFRLTLCQTWQGAQYELDEQGAELILCDTQLSDGDAASWLSTLKHQPEYTAIPFVMLTA HHHHHEEHHCCCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEECEEEEEE VDDPQQRLQAWQCYADDYVSKNSDPGLLVVRLNALIENRRLVQQQMLSLSLAINSVQAST CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC STPVLSTVETLDEQFAKRLRLVIDQHITTQELTVEFVAQQFHTSSRSLQRRVQSVFGLSY CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCH SQYLKQTQLQIAKDALVAGHTVKEAAYYAGFTSQNYFGRVFRAEYGVTPSQFKKDASTKP HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCC PSLA CCCC >Mature Secondary Structure GMATIPSLHVSIGEALLSSFSWVLSLTIILVLSFYLAKLTRTYKAKVKSFQVELTQANK CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHH TIQSLTQQRECEQRTFGQLFTEITKNVTWLAPYIANTQTHTDEMNALLLRINQLLESTRQ HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHH WNESSRQMLSSPFLLQPWLKNQLSFEKAKSQQPLPIHISEIPDLLVQTHLELLEKVFSKF HCHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH CQDIRQSTGIAGYVLEIESKQGLRLTLTGKVEATREEYADDSYLLLKKQVEENGGELCCL HHHHHHCCCCEEEEEEEECCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHCCCCCEEEE HSSQSIAQYTLCLPATVYELPQFTPDFRYLQHHVADESKAKVLIVESDPEFMDWLYYHLA ECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHH ADFRLTLCQTWQGAQYELDEQGAELILCDTQLSDGDAASWLSTLKHQPEYTAIPFVMLTA HHHHHEEHHCCCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEECEEEEEE VDDPQQRLQAWQCYADDYVSKNSDPGLLVVRLNALIENRRLVQQQMLSLSLAINSVQAST CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC STPVLSTVETLDEQFAKRLRLVIDQHITTQELTVEFVAQQFHTSSRSLQRRVQSVFGLSY CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCH SQYLKQTQLQIAKDALVAGHTVKEAAYYAGFTSQNYFGRVFRAEYGVTPSQFKKDASTKP HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCCC PSLA CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA