| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597463
Identifier: 120597463
GI number: 120597463
Start: 688931
End: 689719
Strand: Direct
Name: 120597463
Synonym: Sputw3181_0632
Alternate gene names: NA
Gene position: 688931-689719 (Clockwise)
Preceding gene: 120597462
Following gene: 120597464
Centisome position: 14.63
GC content: 45.5
Gene sequence:
>789_bases ATGTTTGATCTGGAGCTGATGTCGATTTTGCTGCCAGCATTTGCTGCTGGGGTTTTAGTGCTGTCGACTCATGTTGTACT CGGAAGACAAGTTCTAAAGCGTGGCATTATCTTTATTGATTTGGCCATAGCACAAGTGGCGGCTTTGGGAGCCATCGTCG CTCATATGGATCACAGGGTAGAAGATATACCTTTTTCTCATGTGTGGATGCCAGCGGTGTTTGCCCTTGCAGGCGCAGGG TTTATTGCTTGGTTATCTAAGCGTATGGCGGATGAGCTAGAAGCGATGATTGGTTGTTTTTACGTGTTGTCAGCGGTTGC AGCTATGTTGTTGTTGGCAAACGACCCCCATGGGGCTGAGTTACTAAAACAATTGATGTCAGGGCAGATCCTATGGGTCA GTTGGCCACAGTTAATCTTACCTACTGTGGTTTATGCTGTTGTGCTATTAACATTTTTTCTGCGCCCTCAAATCCTTGAT GGTGCAGGATTTTATTTGTTATTTGCGCTGGTTATCACCCTCTCAGTTGAGCTTGTTGGTGTATATCTGGTCTTCAGCAC CTTAATTTTGCCCGCGCTAGCACTGAATAAATACCGTGGAAAAGGTCAATTATTTTATGCCTACCTTGTGGGGTTAATTG GCTATTTACTCGGACTCGTGCTTTCAGCAGCTTTCGATTTACCCAGCGGTGCGGCGATTGTTGCTACATTGGCCGTAAGT GCGCTGGTATTTCGTTGGTGGTTAGCTAAATTAGGGACTTTTTCTGCTCAAATCGCCTCTAAACATTAG
Upstream 100 bases:
>100_bases TAATGCTACCCATGTCAGTGGGTGGTAATGATAGCAGTAAGGATCTATTCAGCCTTTATGACAGTGTGATTTCCCTCTTA AATGGAGTGAAATAACGCCT
Downstream 100 bases:
>100_bases ATGTTGAAATTAAAGCCCATCAACACACTGTATTTACAATGAGTTGATGGGCTTTTTTTTGTTAGCGAATCGGCTTACAG ATGTAAACAATATATTGAGT
Product: ABC-3 protein
Products: NA
Alternate protein names: Metal Ion ABC Transporter Permease; ABC 3 Transport Family Protein; Zinc/Manganese Transport System Permease Protein; Manganese Transport System Permease Protein; Mn2+/Zn2+ ABC Transporter Permease; Zinc ABC Transporter Permease Protein ZnuB; Metal Ion ABC Transporter Permease Component; ABC-Type Mn2+/Zn2+ Transport System Permease Component
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MFDLELMSILLPAFAAGVLVLSTHVVLGRQVLKRGIIFIDLAIAQVAALGAIVAHMDHRVEDIPFSHVWMPAVFALAGAG FIAWLSKRMADELEAMIGCFYVLSAVAAMLLLANDPHGAELLKQLMSGQILWVSWPQLILPTVVYAVVLLTFFLRPQILD GAGFYLLFALVITLSVELVGVYLVFSTLILPALALNKYRGKGQLFYAYLVGLIGYLLGLVLSAAFDLPSGAAIVATLAVS ALVFRWWLAKLGTFSAQIASKH
Sequences:
>Translated_262_residues MFDLELMSILLPAFAAGVLVLSTHVVLGRQVLKRGIIFIDLAIAQVAALGAIVAHMDHRVEDIPFSHVWMPAVFALAGAG FIAWLSKRMADELEAMIGCFYVLSAVAAMLLLANDPHGAELLKQLMSGQILWVSWPQLILPTVVYAVVLLTFFLRPQILD GAGFYLLFALVITLSVELVGVYLVFSTLILPALALNKYRGKGQLFYAYLVGLIGYLLGLVLSAAFDLPSGAAIVATLAVS ALVFRWWLAKLGTFSAQIASKH >Mature_262_residues MFDLELMSILLPAFAAGVLVLSTHVVLGRQVLKRGIIFIDLAIAQVAALGAIVAHMDHRVEDIPFSHVWMPAVFALAGAG FIAWLSKRMADELEAMIGCFYVLSAVAAMLLLANDPHGAELLKQLMSGQILWVSWPQLILPTVVYAVVLLTFFLRPQILD GAGFYLLFALVITLSVELVGVYLVFSTLILPALALNKYRGKGQLFYAYLVGLIGYLLGLVLSAAFDLPSGAAIVATLAVS ALVFRWWLAKLGTFSAQIASKH
Specific function: Unknown
COG id: COG1108
COG function: function code P; ABC-type Mn2+/Zn2+ transport systems, permease components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28371; Mature: 28371
Theoretical pI: Translated: 7.75; Mature: 7.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDLELMSILLPAFAAGVLVLSTHVVLGRQVLKRGIIFIDLAIAQVAALGAIVAHMDHRV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH EDIPFSHVWMPAVFALAGAGFIAWLSKRMADELEAMIGCFYVLSAVAAMLLLANDPHGAE HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LLKQLMSGQILWVSWPQLILPTVVYAVVLLTFFLRPQILDGAGFYLLFALVITLSVELVG HHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH VYLVFSTLILPALALNKYRGKGQLFYAYLVGLIGYLLGLVLSAAFDLPSGAAIVATLAVS HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH ALVFRWWLAKLGTFSAQIASKH HHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MFDLELMSILLPAFAAGVLVLSTHVVLGRQVLKRGIIFIDLAIAQVAALGAIVAHMDHRV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH EDIPFSHVWMPAVFALAGAGFIAWLSKRMADELEAMIGCFYVLSAVAAMLLLANDPHGAE HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LLKQLMSGQILWVSWPQLILPTVVYAVVLLTFFLRPQILDGAGFYLLFALVITLSVELVG HHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH VYLVFSTLILPALALNKYRGKGQLFYAYLVGLIGYLLGLVLSAAFDLPSGAAIVATLAVS HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH ALVFRWWLAKLGTFSAQIASKH HHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA