Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 120597384

GI number: 120597384

Start: 603985

End: 604959

Strand: Direct

Name: yciR [C]

Synonym: Sputw3181_0553

Alternate gene names: 120597384

Gene position: 603985-604959 (Clockwise)

Preceding gene: 120597383

Following gene: 120597385

Centisome position: 12.83

GC content: 42.77

Gene sequence:

>975_bases
GTGGATTCGGATACCACAGCGTTAATTCAGCAACTTCAAGCAGAAATTGCTCAGCTAAAAAGCGAAAATGCCCATTTATC
GGCATTGAATTATCGTGCAGAAGAAAAGCTATTTGCAGCGCTTGATGGTAATGGTTTGTGTCTCTGGGAGCAGCATATTC
CAAGCGGAAATTTAACTATATTCAATATGCGCTGGGGGGAAATGCTCGGGTTTAGTCCAGAAGAGTTGGCTGCCCATGTT
GATATCTGGAAAAGTAAATTACACCCAGAAGATAAAGCGTGGGTTATACAAGTCTTCGAAGATCACGTCAGCGGCAAGTC
TGATTATTATCAGGCAGTGTACCGAATGTTGCATAAAGATGGCAGCGTCACTTGGGTCTCTGATCGTGGTCGAATTGTTG
AGCGCTTGGCCGATGGTACACCACTGCGAATGATGGGTAGCCATATCGATATCACCCAAGAGAAACGCTATGAAATGGGG
TTAGCGCAACTGGCCCACAGTGATCCATTAACCAATTTGTTGAATCGCCAAGCCATTACTAAAGCCTTTGATGAATTGTT
ACTGTCTGATGCTGGTGGAGCATTACTATTTATCGATCTTGATGGATTTAAAGCATTAAATGATCGCCATGGACATAAGT
TTGGCGATAGCTTACTGATACATGTAGCGAATACCTTAGTGTTGCATGCTGGGGAGTATGCACAGATAGCAAGATTTGGT
GGTGATGAGTTTGTGATCTTGCATCCTTCATCGGAGATTGCTTCTTTGACTCAACTTGCCCAATCATTGCTTGATGTTTA
TCGACAGCGTTTTCTGTTAGATGGGCTTGAAGTAGAGATCGGTCTGAGTATTGGTATCGATATTTTTGGAGATGGCGACA
GTTTTACTGACAGTTGTGAGCGTGCAGATATGGCAATGTATGATGTTAAACGTCAAGGTAAGAATGGGTACTGTTTCTAT
AGGAAGATTATTTAG

Upstream 100 bases:

>100_bases
TCGATGTATTACTACAAAGAGTGTTTTACACTGAAATAGCATTTATCTCATCAGTGGATTTCCGCCTTCGCGGGAATGAC
GAATTAAGGAAAATATTCTC

Downstream 100 bases:

>100_bases
TAGAAATGTTTTCCGGCTCGATTTTTGTCAAGTTAAATTATTAGATGCACTTTTTATATAATATTCTGTAATGTTATTAA
TATTATATTTTCGTATTGTT

Product: diguanylate cyclase with PAS/PAC sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MDSDTTALIQQLQAEIAQLKSENAHLSALNYRAEEKLFAALDGNGLCLWEQHIPSGNLTIFNMRWGEMLGFSPEELAAHV
DIWKSKLHPEDKAWVIQVFEDHVSGKSDYYQAVYRMLHKDGSVTWVSDRGRIVERLADGTPLRMMGSHIDITQEKRYEMG
LAQLAHSDPLTNLLNRQAITKAFDELLLSDAGGALLFIDLDGFKALNDRHGHKFGDSLLIHVANTLVLHAGEYAQIARFG
GDEFVILHPSSEIASLTQLAQSLLDVYRQRFLLDGLEVEIGLSIGIDIFGDGDSFTDSCERADMAMYDVKRQGKNGYCFY
RKII

Sequences:

>Translated_324_residues
MDSDTTALIQQLQAEIAQLKSENAHLSALNYRAEEKLFAALDGNGLCLWEQHIPSGNLTIFNMRWGEMLGFSPEELAAHV
DIWKSKLHPEDKAWVIQVFEDHVSGKSDYYQAVYRMLHKDGSVTWVSDRGRIVERLADGTPLRMMGSHIDITQEKRYEMG
LAQLAHSDPLTNLLNRQAITKAFDELLLSDAGGALLFIDLDGFKALNDRHGHKFGDSLLIHVANTLVLHAGEYAQIARFG
GDEFVILHPSSEIASLTQLAQSLLDVYRQRFLLDGLEVEIGLSIGIDIFGDGDSFTDSCERADMAMYDVKRQGKNGYCFY
RKII
>Mature_324_residues
MDSDTTALIQQLQAEIAQLKSENAHLSALNYRAEEKLFAALDGNGLCLWEQHIPSGNLTIFNMRWGEMLGFSPEELAAHV
DIWKSKLHPEDKAWVIQVFEDHVSGKSDYYQAVYRMLHKDGSVTWVSDRGRIVERLADGTPLRMMGSHIDITQEKRYEMG
LAQLAHSDPLTNLLNRQAITKAFDELLLSDAGGALLFIDLDGFKALNDRHGHKFGDSLLIHVANTLVLHAGEYAQIARFG
GDEFVILHPSSEIASLTQLAQSLLDVYRQRFLLDGLEVEIGLSIGIDIFGDGDSFTDSCERADMAMYDVKRQGKNGYCFY
RKII

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=196, Percent_Identity=32.6530612244898, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081881, Length=202, Percent_Identity=33.6633663366337, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788381, Length=195, Percent_Identity=32.8205128205128, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1788956, Length=157, Percent_Identity=36.3057324840764, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=31.9277108433735, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081977, Length=194, Percent_Identity=30.4123711340206, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081974, Length=156, Percent_Identity=32.0512820512821, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081921, Length=190, Percent_Identity=25.7894736842105, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=25.2873563218391, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=30.1204819277108, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 36362; Mature: 36362

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF ; PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSDTTALIQQLQAEIAQLKSENAHLSALNYRAEEKLFAALDGNGLCLWEQHIPSGNLTI
CCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHEEEEECCCEEEEEECCCCCCCEEE
FNMRWGEMLGFSPEELAAHVDIWKSKLHPEDKAWVIQVFEDHVSGKSDYYQAVYRMLHKD
EEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC
GSVTWVSDRGRIVERLADGTPLRMMGSHIDITQEKRYEMGLAQLAHSDPLTNLLNRQAIT
CCEEEECCCHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
KAFDELLLSDAGGALLFIDLDGFKALNDRHGHKFGDSLLIHVANTLVLHAGEYAQIARFG
HHHHHHHHCCCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHEECCCHHHHHHCC
GDEFVILHPSSEIASLTQLAQSLLDVYRQRFLLDGLEVEIGLSIGIDIFGDGDSFTDSCE
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCHHHHHH
RADMAMYDVKRQGKNGYCFYRKII
HHHHHHHHHHHCCCCCEEEEEECC
>Mature Secondary Structure
MDSDTTALIQQLQAEIAQLKSENAHLSALNYRAEEKLFAALDGNGLCLWEQHIPSGNLTI
CCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHEEEEECCCEEEEEECCCCCCCEEE
FNMRWGEMLGFSPEELAAHVDIWKSKLHPEDKAWVIQVFEDHVSGKSDYYQAVYRMLHKD
EEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC
GSVTWVSDRGRIVERLADGTPLRMMGSHIDITQEKRYEMGLAQLAHSDPLTNLLNRQAIT
CCEEEECCCHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
KAFDELLLSDAGGALLFIDLDGFKALNDRHGHKFGDSLLIHVANTLVLHAGEYAQIARFG
HHHHHHHHCCCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHEECCCHHHHHHCC
GDEFVILHPSSEIASLTQLAQSLLDVYRQRFLLDGLEVEIGLSIGIDIFGDGDSFTDSCE
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCHHHHHH
RADMAMYDVKRQGKNGYCFYRKII
HHHHHHHHHHHCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]