| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597233
Identifier: 120597233
GI number: 120597233
Start: 442889
End: 443830
Strand: Direct
Name: 120597233
Synonym: Sputw3181_0402
Alternate gene names: NA
Gene position: 442889-443830 (Clockwise)
Preceding gene: 120597232
Following gene: 120597235
Centisome position: 9.41
GC content: 45.33
Gene sequence:
>942_bases ATGTCAGCACACTTAGCCATACCCCTTTTTGCTATAGTTTTACTCGTCTACGGAGAAACAGCCTCTGCCAACGACAGCAG TTTTGGCGATGCTAATGGCTCTATTACCTTGAAATATCAGCCTAATATCAGTATGGATAAAGAGTCTCTCTTTATCAGCG AGACCGAAGTCAGGGTCGATTATATGTTTACCAACACCAGTTCGCAGGATCTTATCGTCCCCATCGCCTTCCCCATGCCA CCGATGTTTTTTGGCTCCGCCGATCACAGCAGCATTGATAACTTCACCCTTAAAGTGAATGGCAAAACCCAGCCAACTCA GCACAGGCTTGTTGCCCAACTTGCCGATAAAACCGATATTTCAACCGAGTTGAAACAGCTTGGCTGGGGTGTAGATGAAG TCGCTTACTTTGCCGAATATGCCGAAGTCCCCAAGGGTAAATCCGCGCTCCCCAAGCAATGGTTGGATGAGAACCAACAA ATCGCCTTTACCCTAAGTGATTACTTTGTGTGGGAACAAACTTTTCCCGCGGGTAAATCTGTCGCTATCAGCCATAGCTA CACGCCAAGCCTCTCAACAGGTATCCCCGATACTGCCAGTAGTATTATTGATACTTACACTGAACTGGCCTGTTTAGATG AAAGTGCAAAGCAAGGCATTAGGAAGCGCAACCTTATCGTTAAACAAGACGGTGAAGATCAGGAGATTGGCGTGGAATGG AGCCACCTTAGCTATATTTTGGTCACGGCTAATAACTGGCAAGGGCCGATTAAGGACTTCAAACTCATCCTAAAAAAATC CCAGCCCACAGATCTCATTAGCTTGTGTTTTGATGGTGAGCTCAAAAAAACCGATCCACTCACCTTTGAATTCCAGCAAA AACAGTTCACGCCAAAGCAAGATCTTAGCATCCTGTTTATTCGTAAACCGAATTTTGAATAA
Upstream 100 bases:
>100_bases CCACAAGCGCGAAATGCGATAAGTGCGGCCATCGACCTCGCCCGCGCGCAATAATCGTTCCCCATTGATACTAAAACATC CAACTAGAGTTAAGAAGTTT
Downstream 100 bases:
>100_bases TCAAAAAAGAAGCCAGCATGTAGCTGGCTTCTTTATAACTCACTATTTTCAATTTAAAAACTATAGGTCATACCTAACCA ATAACGGCGGCCATCTTCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 313; Mature: 312
Protein sequence:
>313_residues MSAHLAIPLFAIVLLVYGETASANDSSFGDANGSITLKYQPNISMDKESLFISETEVRVDYMFTNTSSQDLIVPIAFPMP PMFFGSADHSSIDNFTLKVNGKTQPTQHRLVAQLADKTDISTELKQLGWGVDEVAYFAEYAEVPKGKSALPKQWLDENQQ IAFTLSDYFVWEQTFPAGKSVAISHSYTPSLSTGIPDTASSIIDTYTELACLDESAKQGIRKRNLIVKQDGEDQEIGVEW SHLSYILVTANNWQGPIKDFKLILKKSQPTDLISLCFDGELKKTDPLTFEFQQKQFTPKQDLSILFIRKPNFE
Sequences:
>Translated_313_residues MSAHLAIPLFAIVLLVYGETASANDSSFGDANGSITLKYQPNISMDKESLFISETEVRVDYMFTNTSSQDLIVPIAFPMP PMFFGSADHSSIDNFTLKVNGKTQPTQHRLVAQLADKTDISTELKQLGWGVDEVAYFAEYAEVPKGKSALPKQWLDENQQ IAFTLSDYFVWEQTFPAGKSVAISHSYTPSLSTGIPDTASSIIDTYTELACLDESAKQGIRKRNLIVKQDGEDQEIGVEW SHLSYILVTANNWQGPIKDFKLILKKSQPTDLISLCFDGELKKTDPLTFEFQQKQFTPKQDLSILFIRKPNFE >Mature_312_residues SAHLAIPLFAIVLLVYGETASANDSSFGDANGSITLKYQPNISMDKESLFISETEVRVDYMFTNTSSQDLIVPIAFPMPP MFFGSADHSSIDNFTLKVNGKTQPTQHRLVAQLADKTDISTELKQLGWGVDEVAYFAEYAEVPKGKSALPKQWLDENQQI AFTLSDYFVWEQTFPAGKSVAISHSYTPSLSTGIPDTASSIIDTYTELACLDESAKQGIRKRNLIVKQDGEDQEIGVEWS HLSYILVTANNWQGPIKDFKLILKKSQPTDLISLCFDGELKKTDPLTFEFQQKQFTPKQDLSILFIRKPNFE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35029; Mature: 34898
Theoretical pI: Translated: 4.60; Mature: 4.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAHLAIPLFAIVLLVYGETASANDSSFGDANGSITLKYQPNISMDKESLFISETEVRVD CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHEEEEEEEEEEE YMFTNTSSQDLIVPIAFPMPPMFFGSADHSSIDNFTLKVNGKTQPTQHRLVAQLADKTDI EEEECCCCCCEEEEEECCCCCCEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCH STELKQLGWGVDEVAYFAEYAEVPKGKSALPKQWLDENQQIAFTLSDYFVWEQTFPAGKS HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEEEEEEEEEECCCCCCE VAISHSYTPSLSTGIPDTASSIIDTYTELACLDESAKQGIRKRNLIVKQDGEDQEIGVEW EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCHHHCCEEEEECCCCCCCCEEE SHLSYILVTANNWQGPIKDFKLILKKSQPTDLISLCFDGELKKTDPLTFEFQQKQFTPKQ ECEEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCC DLSILFIRKPNFE CCEEEEEECCCCC >Mature Secondary Structure SAHLAIPLFAIVLLVYGETASANDSSFGDANGSITLKYQPNISMDKESLFISETEVRVD CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHEEEEEEEEEEE YMFTNTSSQDLIVPIAFPMPPMFFGSADHSSIDNFTLKVNGKTQPTQHRLVAQLADKTDI EEEECCCCCCEEEEEECCCCCCEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCH STELKQLGWGVDEVAYFAEYAEVPKGKSALPKQWLDENQQIAFTLSDYFVWEQTFPAGKS HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEEEEEEEEEECCCCCCE VAISHSYTPSLSTGIPDTASSIIDTYTELACLDESAKQGIRKRNLIVKQDGEDQEIGVEW EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCHHHCCEEEEECCCCCCCCEEE SHLSYILVTANNWQGPIKDFKLILKKSQPTDLISLCFDGELKKTDPLTFEFQQKQFTPKQ ECEEEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCC DLSILFIRKPNFE CCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA