| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597200
Identifier: 120597200
GI number: 120597200
Start: 396261
End: 396779
Strand: Direct
Name: 120597200
Synonym: Sputw3181_0369
Alternate gene names: NA
Gene position: 396261-396779 (Clockwise)
Preceding gene: 120597199
Following gene: 120597203
Centisome position: 8.42
GC content: 42.2
Gene sequence:
>519_bases ATGAGCCCTCAATTTTTTGAACTCGCCCCTTTAACCCAAACCTCTATCTTCAGCTTTATCGTCTTATTGCTCGGGATCGT AGGTATCTTGCTGATGTTGTGGCTAAAAAACATGCCTAAAATAGCAAAATCCGCGAGTTTAGGCATATTGCTGGTGATGA TGGGCGGATTTTCTTGGGTCTTTTATCAATCCAATAGCGCCGAATTAGTGTTAACCGATACAGAGCTCACATTGGATGTT CCCTTCTATAAAGTGCAGTTATCCCGCGCGGATTTATTACCTGCCGAGGCGCGCATAGTCGATTTGCAGCAAGAGGCAGA TTTAACACCGAGCTTTAAAACGAATGGTATAGGTATGCCTGGATTTCAATTAGGTTGGTTTAACTTACAGGGGAAGACTA AAGCATTTTTGGCGATAACAGATAAATCGCAGTTAGTGTTAGTGCCAACGACTAAAGGCTACAGTTTATTACTGACAGTA CCACAAGGGAGTGAGTTTTTAGCACAGTTACAGAAGTAA
Upstream 100 bases:
>100_bases ACGAATGCCAGCCTAGTACTCATATTAGCGCTGGCATTTTTATTGACATAATATGTCTTTGTTGGCAGATTAAGGCTTCA CTGCACGGGAGATGCTGCCA
Downstream 100 bases:
>100_bases TCATCAGTCATCACTTCTGCCACTGTGTTTATTGGCGTGATAATGTTTACGCTGGTTTGCGTTTATAGGCCATATCTAAG GTGAAGACTAACAGCGCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 172; Mature: 171
Protein sequence:
>172_residues MSPQFFELAPLTQTSIFSFIVLLLGIVGILLMLWLKNMPKIAKSASLGILLVMMGGFSWVFYQSNSAELVLTDTELTLDV PFYKVQLSRADLLPAEARIVDLQQEADLTPSFKTNGIGMPGFQLGWFNLQGKTKAFLAITDKSQLVLVPTTKGYSLLLTV PQGSEFLAQLQK
Sequences:
>Translated_172_residues MSPQFFELAPLTQTSIFSFIVLLLGIVGILLMLWLKNMPKIAKSASLGILLVMMGGFSWVFYQSNSAELVLTDTELTLDV PFYKVQLSRADLLPAEARIVDLQQEADLTPSFKTNGIGMPGFQLGWFNLQGKTKAFLAITDKSQLVLVPTTKGYSLLLTV PQGSEFLAQLQK >Mature_171_residues SPQFFELAPLTQTSIFSFIVLLLGIVGILLMLWLKNMPKIAKSASLGILLVMMGGFSWVFYQSNSAELVLTDTELTLDVP FYKVQLSRADLLPAEARIVDLQQEADLTPSFKTNGIGMPGFQLGWFNLQGKTKAFLAITDKSQLVLVPTTKGYSLLLTVP QGSEFLAQLQK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18976; Mature: 18844
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPQFFELAPLTQTSIFSFIVLLLGIVGILLMLWLKNMPKIAKSASLGILLVMMGGFSWV CCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEEECCCEEE FYQSNSAELVLTDTELTLDVPFYKVQLSRADLLPAEARIVDLQQEADLTPSFKTNGIGMP EEECCCCEEEEEECEEEEECCEEEEEECCCCCCCCCCEEEEEHHHCCCCCCCCCCCCCCC GFQLGWFNLQGKTKAFLAITDKSQLVLVPTTKGYSLLLTVPQGSEFLAQLQK CCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCHHHHHHHCC >Mature Secondary Structure SPQFFELAPLTQTSIFSFIVLLLGIVGILLMLWLKNMPKIAKSASLGILLVMMGGFSWV CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEEECCCEEE FYQSNSAELVLTDTELTLDVPFYKVQLSRADLLPAEARIVDLQQEADLTPSFKTNGIGMP EEECCCCEEEEEECEEEEECCEEEEEECCCCCCCCCCEEEEEHHHCCCCCCCCCCCCCCC GFQLGWFNLQGKTKAFLAITDKSQLVLVPTTKGYSLLLTVPQGSEFLAQLQK CCEEEEEEECCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA