| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597141
Identifier: 120597141
GI number: 120597141
Start: 337047
End: 337493
Strand: Direct
Name: 120597141
Synonym: Sputw3181_0310
Alternate gene names: NA
Gene position: 337047-337493 (Clockwise)
Preceding gene: 120597140
Following gene: 120597147
Centisome position: 7.16
GC content: 48.1
Gene sequence:
>447_bases ATGAGTGATAAACAAACGACTACTGAAACGGCTAAAGATACCATCGCCCGTCTTAGAGCTAATCGTCAGCAACGGAGTGA TATTGCGATTGAGGCGTCACAGCATCGGCAACCCGTAAATATTGGAGATGCTCCAATAAAGCCAACCCCTAAACGCGCCT CTAAGCAATCAGGCGGTGTTAATACGGTAGAACGCAAGAATGCGATTAACGCTATCACACAACGGCTCTTACGCAGTGAG CTAAGCCAAGGGCAAGCTCTGAAAGCTCTGCGAGTTGAGGTGCTAGGACTCACGCAAGATGAGTATGCAAACTTGGTTAA AGTATCGCGCAAGACCCTCTCGGACGTTGAGAACGACCGTGGTAGTTTTAAGACCGATATTCTCGACCGACTATTTAAGC CTTTTGGTCTTAAGGTCGGGATTGTGCCTATCTCTGTTGGGCCTTAG
Upstream 100 bases:
>100_bases AGCAACGCTTAATAGAGCGTGGTGTGCCACTGCGCATTATCGACATGCCAGCAATTGGCTTTGCTTACCTCGAAGACAAA CTAACGCGTTGGGGATTAGC
Downstream 100 bases:
>100_bases GCGGCCCATTGCTCGCCTAAGGCCTCGGCTTGTTGTAAAACCAATTGCACTGCGCCATCAGCTTGGTCGGGCGGATATTT GTATTTACGTAATATTCGCT
Product: XRE family transcriptional regulator
Products: NA
Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Cro/CI Family Transcriptional Regulator
Number of amino acids: Translated: 148; Mature: 147
Protein sequence:
>148_residues MSDKQTTTETAKDTIARLRANRQQRSDIAIEASQHRQPVNIGDAPIKPTPKRASKQSGGVNTVERKNAINAITQRLLRSE LSQGQALKALRVEVLGLTQDEYANLVKVSRKTLSDVENDRGSFKTDILDRLFKPFGLKVGIVPISVGP
Sequences:
>Translated_148_residues MSDKQTTTETAKDTIARLRANRQQRSDIAIEASQHRQPVNIGDAPIKPTPKRASKQSGGVNTVERKNAINAITQRLLRSE LSQGQALKALRVEVLGLTQDEYANLVKVSRKTLSDVENDRGSFKTDILDRLFKPFGLKVGIVPISVGP >Mature_147_residues SDKQTTTETAKDTIARLRANRQQRSDIAIEASQHRQPVNIGDAPIKPTPKRASKQSGGVNTVERKNAINAITQRLLRSEL SQGQALKALRVEVLGLTQDEYANLVKVSRKTLSDVENDRGSFKTDILDRLFKPFGLKVGIVPISVGP
Specific function: Unknown
COG id: COG1396
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16289; Mature: 16158
Theoretical pI: Translated: 10.92; Mature: 10.92
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDKQTTTETAKDTIARLRANRQQRSDIAIEASQHRQPVNIGDAPIKPTPKRASKQSGGV CCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEHHCCCCCCCCCCCCCCCCCCHHCCCCCCC NTVERKNAINAITQRLLRSELSQGQALKALRVEVLGLTQDEYANLVKVSRKTLSDVENDR CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC GSFKTDILDRLFKPFGLKVGIVPISVGP CCHHHHHHHHHHHHCCCEEEEEEECCCC >Mature Secondary Structure SDKQTTTETAKDTIARLRANRQQRSDIAIEASQHRQPVNIGDAPIKPTPKRASKQSGGV CCCHHHHHHHHHHHHHHHHHHHHHHCEEEEHHCCCCCCCCCCCCCCCCCCHHCCCCCCC NTVERKNAINAITQRLLRSELSQGQALKALRVEVLGLTQDEYANLVKVSRKTLSDVENDR CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC GSFKTDILDRLFKPFGLKVGIVPISVGP CCHHHHHHHHHHHHCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA