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The map label for this gene is norR [H]

Identifier: 120597147

GI number: 120597147

Start: 340971

End: 342656

Strand: Direct

Name: norR [H]

Synonym: Sputw3181_0316

Alternate gene names: 120597147

Gene position: 340971-342656 (Clockwise)

Preceding gene: 120597141

Following gene: 120597148

Centisome position: 7.24

GC content: 45.08

Gene sequence:

>1686_bases
ATGATGGAATCATCATTTGGTGGTTCACTAAATGATGAAGTCGATATAATGGAATTTAGGGTTATCAATTTTAGCGAAGA
AAAATCCCCCAAGGATTTGGCTCCTTATTGGCATCAAGTCAGCCTGGAATCTACCCAACAAACGGTTTCGTTTACACCGT
ATATTAGCGACATCATTTCACAGGCCGTGATGAGTGAATGGAAGCAGGCGCTGGCATTGATCGTAGGCAGTGAAAATATC
AAAGAGCTGGCAAAGAAGTACTCAGACTTTATGCCCTGGGTTGAAAACATTGCAGAGAAGGGACCTGAGGCTGTTTTGCA
AAATGAACATAACCTCTTTTCTGGCTTATATATAACAGATAGGTACGACGTGGCCCAGGACCGCAATTTTGTCAGCCAGG
CGCGAGCTATCTTGGCGCGCAAAACGGTCTTTTTGTTGCCAGATAGCTCGCCGTCGAACTCAGTGCTGCATCGTGCGGAT
GAGCGTAATGTATTTATACGCTCGTTTTCAGCATTACTTAGCGCGGGGAATACCTCTATCGCACTGGCAAAATCCGGTTA
TAAAACCAGTGGTGATAGTTCTATTTTTAACGCCGTGCTAGCGTCACTTTTTGCCAGAAATTCGCAGCTAAGGTTAGATG
AAGATACAGGCATTCACATCAAGCCTGGCCCCCTACTTATTGAGGGGGATACTGGTACAGGGAAAAGCGCTGCGGCTAAA
CATCTGTCTATGAAGATGGGTAAAACAATGGTTGAGATTAACCTTGCCGCCGTCAGTGAAACATTGCTGGAAACCCGTAT
GCGGGGCTCGTCAATAGGGGCATTTACTGGTGCGACTAACAAAAAAGGTTTTTTTGAAGAGGCTGACAACGGCGTGCTCT
TCCTTGATGAGCTACAAAGTGCAAACCTAGCCTCGCAAACACAGCTGCTGGATTTACTTTCTGCCATCAGCAATGATGTC
TGGATTAGTAAAGTAGGGGACGATGCGGCAAAGAAAAAATTCAATGTAAAAGTGGTACTTGCCGTCAATGAGCCCGTCTC
ACGTCTGCTGGCCGAAGGCCGGTTAAGGCCTGATCTGTTTCATCGCATTCGTGACGTGGTGAAATTTAAATCACTCAACG
AGCTGTTTGCACAAGAAAACGGCCAAGCGTTTTTAACACAAATTCTGACGTTCTACCGTTGGAAATCACTTGAACTTCCA
GCATTTAGTACTGATGGTAAAGCGAAACAGGTGCTTTCACAGATTTTTATCATTTATGAAGACGGTGTCCTTGAAAAAAT
AATGAGGGCTCCTTGGCCGGGAAATTTCCGCCAGTTGGAGCGTTTTGCCTGGGATCTATTCTTTGTACTCGGCGAAAGTG
TCGTAGTGACCAACGACCTTATTGAGCGTCTACTGAGAGAGGAAAATTCCCGCATTCCAAGCGCATTTATTGAGGCCGTG
CCAATTCAAAGCGAGCAAACTGTTAGCAAAATATTCAGTGAAGTGGAAACCATCATCAAAAAACATCATTTCAATATGGC
AGCTGCGCGGCAAGAACTAGGAATTTATAACCTGAAATCTCCCCCCGCGTTGAGAGGGTTTATTCTGAGAAACAAAGAGC
AATTTAGCGAGGGTTTTCTTGCCGACTCAGCAATTACTAAGATCTTTACCGAAGCAGCTTTAGAACGTAAGACTGGGGCT
GAGTGA

Upstream 100 bases:

>100_bases
ACATTACGATTGCTAATCGCGTGCCAAGTTTTTAAATTGAAAATAATATTTATTTATCAATGCTTTATTTGTTTATGGCT
TAGATTGACTTTGTTGTTTG

Downstream 100 bases:

>100_bases
ACGATTTTTGTGTGCTGTGGTGAGCTGAGTCCCGCTAATATCATTTGTTCAAGATACTCGTGATTCACTAAAGCTATTTT
TTGGTGAAGCGAGATATTTA

Product: sigma-54 factor interaction domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 561; Mature: 561

Protein sequence:

>561_residues
MMESSFGGSLNDEVDIMEFRVINFSEEKSPKDLAPYWHQVSLESTQQTVSFTPYISDIISQAVMSEWKQALALIVGSENI
KELAKKYSDFMPWVENIAEKGPEAVLQNEHNLFSGLYITDRYDVAQDRNFVSQARAILARKTVFLLPDSSPSNSVLHRAD
ERNVFIRSFSALLSAGNTSIALAKSGYKTSGDSSIFNAVLASLFARNSQLRLDEDTGIHIKPGPLLIEGDTGTGKSAAAK
HLSMKMGKTMVEINLAAVSETLLETRMRGSSIGAFTGATNKKGFFEEADNGVLFLDELQSANLASQTQLLDLLSAISNDV
WISKVGDDAAKKKFNVKVVLAVNEPVSRLLAEGRLRPDLFHRIRDVVKFKSLNELFAQENGQAFLTQILTFYRWKSLELP
AFSTDGKAKQVLSQIFIIYEDGVLEKIMRAPWPGNFRQLERFAWDLFFVLGESVVVTNDLIERLLREENSRIPSAFIEAV
PIQSEQTVSKIFSEVETIIKKHHFNMAAARQELGIYNLKSPPALRGFILRNKEQFSEGFLADSAITKIFTEAALERKTGA
E

Sequences:

>Translated_561_residues
MMESSFGGSLNDEVDIMEFRVINFSEEKSPKDLAPYWHQVSLESTQQTVSFTPYISDIISQAVMSEWKQALALIVGSENI
KELAKKYSDFMPWVENIAEKGPEAVLQNEHNLFSGLYITDRYDVAQDRNFVSQARAILARKTVFLLPDSSPSNSVLHRAD
ERNVFIRSFSALLSAGNTSIALAKSGYKTSGDSSIFNAVLASLFARNSQLRLDEDTGIHIKPGPLLIEGDTGTGKSAAAK
HLSMKMGKTMVEINLAAVSETLLETRMRGSSIGAFTGATNKKGFFEEADNGVLFLDELQSANLASQTQLLDLLSAISNDV
WISKVGDDAAKKKFNVKVVLAVNEPVSRLLAEGRLRPDLFHRIRDVVKFKSLNELFAQENGQAFLTQILTFYRWKSLELP
AFSTDGKAKQVLSQIFIIYEDGVLEKIMRAPWPGNFRQLERFAWDLFFVLGESVVVTNDLIERLLREENSRIPSAFIEAV
PIQSEQTVSKIFSEVETIIKKHHFNMAAARQELGIYNLKSPPALRGFILRNKEQFSEGFLADSAITKIFTEAALERKTGA
E
>Mature_561_residues
MMESSFGGSLNDEVDIMEFRVINFSEEKSPKDLAPYWHQVSLESTQQTVSFTPYISDIISQAVMSEWKQALALIVGSENI
KELAKKYSDFMPWVENIAEKGPEAVLQNEHNLFSGLYITDRYDVAQDRNFVSQARAILARKTVFLLPDSSPSNSVLHRAD
ERNVFIRSFSALLSAGNTSIALAKSGYKTSGDSSIFNAVLASLFARNSQLRLDEDTGIHIKPGPLLIEGDTGTGKSAAAK
HLSMKMGKTMVEINLAAVSETLLETRMRGSSIGAFTGATNKKGFFEEADNGVLFLDELQSANLASQTQLLDLLSAISNDV
WISKVGDDAAKKKFNVKVVLAVNEPVSRLLAEGRLRPDLFHRIRDVVKFKSLNELFAQENGQAFLTQILTFYRWKSLELP
AFSTDGKAKQVLSQIFIIYEDGVLEKIMRAPWPGNFRQLERFAWDLFFVLGESVVVTNDLIERLLREENSRIPSAFIEAV
PIQSEQTVSKIFSEVETIIKKHHFNMAAARQELGIYNLKSPPALRGFILRNKEQFSEGFLADSAITKIFTEAALERKTGA
E

Specific function: Required for the expression of anaerobic nitric oxide (NO) reductase, acts as a transcriptional activator for at least the norVW operon. Activation also requires sigma-54 [H]

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788905, Length=262, Percent_Identity=31.2977099236641, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87081872, Length=250, Percent_Identity=30, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI87082152, Length=300, Percent_Identity=31.3333333333333, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1790299, Length=259, Percent_Identity=29.3436293436293, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1789233, Length=252, Percent_Identity=29.3650793650794, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI87082117, Length=223, Percent_Identity=33.1838565022422, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1786524, Length=273, Percent_Identity=30.4029304029304, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1788550, Length=164, Percent_Identity=34.7560975609756, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787583, Length=196, Percent_Identity=32.6530612244898, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1790437, Length=221, Percent_Identity=29.8642533936652, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1789087, Length=220, Percent_Identity=30.4545454545455, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1789828, Length=198, Percent_Identity=30.3030303030303, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002078 [H]

Pfam domain/function: PF01590 GAF; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 62590; Mature: 62590

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMESSFGGSLNDEVDIMEFRVINFSEEKSPKDLAPYWHQVSLESTQQTVSFTPYISDIIS
CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHCCHHHHEEHHHHHHHEEECHHHHHHHH
QAVMSEWKQALALIVGSENIKELAKKYSDFMPWVENIAEKGPEAVLQNEHNLFSGLYITD
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHCCEEEEC
RYDVAQDRNFVSQARAILARKTVFLLPDSSPSNSVLHRADERNVFIRSFSALLSAGNTSI
CCCHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCEE
ALAKSGYKTSGDSSIFNAVLASLFARNSQLRLDEDTGIHIKPGPLLIEGDTGTGKSAAAK
EEEECCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEECCCCEEEECCCCCCHHHHHH
HLSMKMGKTMVEINLAAVSETLLETRMRGSSIGAFTGATNKKGFFEEADNGVLFLDELQS
HHHHHHCCEEEEEHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHCCCCCEEEEECCCC
ANLASQTQLLDLLSAISNDVWISKVGDDAAKKKFNVKVVLAVNEPVSRLLAEGRLRPDLF
CCHHHHHHHHHHHHHHCCCCEEEECCCHHHHCEECEEEEEEECHHHHHHHHCCCCCHHHH
HRIRDVVKFKSLNELFAQENGQAFLTQILTFYRWKSLELPAFSTDGKAKQVLSQIFIIYE
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCC
DGVLEKIMRAPWPGNFRQLERFAWDLFFVLGESVVVTNDLIERLLREENSRIPSAFIEAV
CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCHHHHHHC
PIQSEQTVSKIFSEVETIIKKHHFNMAAARQELGIYNLKSPPALRGFILRNKEQFSEGFL
CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHCHH
ADSAITKIFTEAALERKTGAE
HHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMESSFGGSLNDEVDIMEFRVINFSEEKSPKDLAPYWHQVSLESTQQTVSFTPYISDIIS
CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHCCHHHHEEHHHHHHHEEECHHHHHHHH
QAVMSEWKQALALIVGSENIKELAKKYSDFMPWVENIAEKGPEAVLQNEHNLFSGLYITD
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHCCEEEEC
RYDVAQDRNFVSQARAILARKTVFLLPDSSPSNSVLHRADERNVFIRSFSALLSAGNTSI
CCCHHHHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCEE
ALAKSGYKTSGDSSIFNAVLASLFARNSQLRLDEDTGIHIKPGPLLIEGDTGTGKSAAAK
EEEECCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEECCCCEEEECCCCCCHHHHHH
HLSMKMGKTMVEINLAAVSETLLETRMRGSSIGAFTGATNKKGFFEEADNGVLFLDELQS
HHHHHHCCEEEEEHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHCCCCCEEEEECCCC
ANLASQTQLLDLLSAISNDVWISKVGDDAAKKKFNVKVVLAVNEPVSRLLAEGRLRPDLF
CCHHHHHHHHHHHHHHCCCCEEEECCCHHHHCEECEEEEEEECHHHHHHHHCCCCCHHHH
HRIRDVVKFKSLNELFAQENGQAFLTQILTFYRWKSLELPAFSTDGKAKQVLSQIFIIYE
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCC
DGVLEKIMRAPWPGNFRQLERFAWDLFFVLGESVVVTNDLIERLLREENSRIPSAFIEAV
CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCHHHHHHC
PIQSEQTVSKIFSEVETIIKKHHFNMAAARQELGIYNLKSPPALRGFILRNKEQFSEGFL
CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHCHH
ADSAITKIFTEAALERKTGAE
HHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA