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The map label for this gene is ydcO [H]

Identifier: 120597110

GI number: 120597110

Start: 304432

End: 305619

Strand: Direct

Name: ydcO [H]

Synonym: Sputw3181_0279

Alternate gene names: 120597110

Gene position: 304432-305619 (Clockwise)

Preceding gene: 120597108

Following gene: 120597136

Centisome position: 6.47

GC content: 51.18

Gene sequence:

>1188_bases
ATGTGGCGAGATGCAGGAAGTTTGTCAAAAATATCAGCGGGTTTTATTGCGGTATTAGTGGGTTATAGCAGCTCGGCTGT
GATCATCTTTCAAGCGGCGGAAGCTGTGGGGGCGACACCAGCACAGATCAGTTCATGGCTGTGGGCTTTAGGTGTGGGCA
TGGGTGTGACCAGCATAGGGTTATCGCTTTACTACAAGAATCCTATTCTAACGGCTTGGTCTACACCGGGCGCAGCGCTA
ATGGTGACTAGCCTTGCGGGATTGAGCGTCAACCAAGCCATAGGCGCTTTTCTGGTGAGTTCAATTCTAATCACCCTTTG
CGGTGTTGCGGGCTGGATGGATAAACTTATTCGTATCATGCCGCAGTCGGTGGCTTCCGCCATGTTAGCGGGGATCCTGC
TGCAATTTGGCCTAGGGCTATTTCAGGCGATGCAAACCCAGTTGAGTCTAATTTTGATCATGCTGTTGGTGTTTGTAGTC
GTTAAGCCTTTTGCGCCGCGCTACATCATCTTGCTGACCTTGTTGGTGGGCATAGGCATGAGTTTTCAATTAGATTTGCT
CAAGCTAGATGCCGTTCAGTTGCAACTGGCGATGCCAGTGTGGACGACACCTGAGTTTTCGCTGGCGAGTGTAATTGGCG
TAGCATTACCGCTGTTTGTGGTGACTATGGCATCGCAAAATATGCCGGGCGTTGCTGCGCTGCACGGTAATGGCTACAGG
CCGCCTATTTCGCCTTTGATCACGAGCACAGGCTTAATCGGGGTTATTCTCGCGCCCTTTGGCGGTTTTGCCTTTAACTT
ATCCGCCATCACAGCGGCCATCTGCATGGGTAAAGAGGCCGATCCAAATCCGGCTACCCGCTACTGGGCGGCGGTATGGG
GCGGGGTGTTTTACTTTATCACTGGGTTATTGGGTGCCACTGTGGTTGGACTGTTTTCCGCTTTCCCGAAGGAATTAGTA
CTGGCCATCGCCGGATTAGCCCTGCTCGGCACTATTGCCAATAGTCTGACCGCTGCATTAGCTAAAACGGAAGATCGCGA
AGTAGCAATTATCACTTTCTTGGTCACTGCATCGGGTTTTAGTGTGCTGGGCATCGGCAGCGCATTTTGGGGGTTGTTAC
TTGGGTTTATTATCCATTGGTGGAACGGGCACAGAACTGCATCAGTAGTTAAGCGAGCGAATACTTAA

Upstream 100 bases:

>100_bases
CCATCTCGTACGTTATAGCGCACAAAGGCTATCTTGTTCATTTTATAAGTTATAGCGCACAACGTGGTGGCGACAGCAAT
TGCAGAAAAAGGGAGTGGGT

Downstream 100 bases:

>100_bases
CTGCAGCAAAGCGCCTTAGAGATGAATTTCAAAGACTAAGGCGCATGTGTTTTAGATTCTCTTCGTCATAAACACACTAT
TGGGATCGAGTCGATAATCG

Product: benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MWRDAGSLSKISAGFIAVLVGYSSSAVIIFQAAEAVGATPAQISSWLWALGVGMGVTSIGLSLYYKNPILTAWSTPGAAL
MVTSLAGLSVNQAIGAFLVSSILITLCGVAGWMDKLIRIMPQSVASAMLAGILLQFGLGLFQAMQTQLSLILIMLLVFVV
VKPFAPRYIILLTLLVGIGMSFQLDLLKLDAVQLQLAMPVWTTPEFSLASVIGVALPLFVVTMASQNMPGVAALHGNGYR
PPISPLITSTGLIGVILAPFGGFAFNLSAITAAICMGKEADPNPATRYWAAVWGGVFYFITGLLGATVVGLFSAFPKELV
LAIAGLALLGTIANSLTAALAKTEDREVAIITFLVTASGFSVLGIGSAFWGLLLGFIIHWWNGHRTASVVKRANT

Sequences:

>Translated_395_residues
MWRDAGSLSKISAGFIAVLVGYSSSAVIIFQAAEAVGATPAQISSWLWALGVGMGVTSIGLSLYYKNPILTAWSTPGAAL
MVTSLAGLSVNQAIGAFLVSSILITLCGVAGWMDKLIRIMPQSVASAMLAGILLQFGLGLFQAMQTQLSLILIMLLVFVV
VKPFAPRYIILLTLLVGIGMSFQLDLLKLDAVQLQLAMPVWTTPEFSLASVIGVALPLFVVTMASQNMPGVAALHGNGYR
PPISPLITSTGLIGVILAPFGGFAFNLSAITAAICMGKEADPNPATRYWAAVWGGVFYFITGLLGATVVGLFSAFPKELV
LAIAGLALLGTIANSLTAALAKTEDREVAIITFLVTASGFSVLGIGSAFWGLLLGFIIHWWNGHRTASVVKRANT
>Mature_395_residues
MWRDAGSLSKISAGFIAVLVGYSSSAVIIFQAAEAVGATPAQISSWLWALGVGMGVTSIGLSLYYKNPILTAWSTPGAAL
MVTSLAGLSVNQAIGAFLVSSILITLCGVAGWMDKLIRIMPQSVASAMLAGILLQFGLGLFQAMQTQLSLILIMLLVFVV
VKPFAPRYIILLTLLVGIGMSFQLDLLKLDAVQLQLAMPVWTTPEFSLASVIGVALPLFVVTMASQNMPGVAALHGNGYR
PPISPLITSTGLIGVILAPFGGFAFNLSAITAAICMGKEADPNPATRYWAAVWGGVFYFITGLLGATVVGLFSAFPKELV
LAIAGLALLGTIANSLTAALAKTEDREVAIITFLVTASGFSVLGIGSAFWGLLLGFIIHWWNGHRTASVVKRANT

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=368, Percent_Identity=50.5434782608696, Blast_Score=354, Evalue=4e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 41366; Mature: 41366

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS00079 MULTICOPPER_OXIDASE1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRDAGSLSKISAGFIAVLVGYSSSAVIIFQAAEAVGATPAQISSWLWALGVGMGVTSIG
CCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHCCHHHHH
LSLYYKNPILTAWSTPGAALMVTSLAGLSVNQAIGAFLVSSILITLCGVAGWMDKLIRIM
HEEEECCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PQSVASAMLAGILLQFGLGLFQAMQTQLSLILIMLLVFVVVKPFAPRYIILLTLLVGIGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
SFQLDLLKLDAVQLQLAMPVWTTPEFSLASVIGVALPLFVVTMASQNMPGVAALHGNGYR
CCEEHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
PPISPLITSTGLIGVILAPFGGFAFNLSAITAAICMGKEADPNPATRYWAAVWGGVFYFI
CCCHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
TGLLGATVVGLFSAFPKELVLAIAGLALLGTIANSLTAALAKTEDREVAIITFLVTASGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHCCC
SVLGIGSAFWGLLLGFIIHWWNGHRTASVVKRANT
CEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MWRDAGSLSKISAGFIAVLVGYSSSAVIIFQAAEAVGATPAQISSWLWALGVGMGVTSIG
CCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHCCHHHHH
LSLYYKNPILTAWSTPGAALMVTSLAGLSVNQAIGAFLVSSILITLCGVAGWMDKLIRIM
HEEEECCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PQSVASAMLAGILLQFGLGLFQAMQTQLSLILIMLLVFVVVKPFAPRYIILLTLLVGIGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
SFQLDLLKLDAVQLQLAMPVWTTPEFSLASVIGVALPLFVVTMASQNMPGVAALHGNGYR
CCEEHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
PPISPLITSTGLIGVILAPFGGFAFNLSAITAAICMGKEADPNPATRYWAAVWGGVFYFI
CCCHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
TGLLGATVVGLFSAFPKELVLAIAGLALLGTIANSLTAALAKTEDREVAIITFLVTASGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHCCC
SVLGIGSAFWGLLLGFIIHWWNGHRTASVVKRANT
CEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]