| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597096
Identifier: 120597096
GI number: 120597096
Start: 287683
End: 288555
Strand: Direct
Name: 120597096
Synonym: Sputw3181_0265
Alternate gene names: NA
Gene position: 287683-288555 (Clockwise)
Preceding gene: 120597095
Following gene: 120597098
Centisome position: 6.11
GC content: 48.57
Gene sequence:
>873_bases ATGAATAAGAGAGCAGCGCCGCAGCAGTCGGCGTCGACAGAGCAAGAGACACAACCGTTGGACGACAGTCGATATGAAGA CCTGCCGCGCAGTGAGTTCCTGCAATTACCCAAAGAGGAGCAAGACCGGCTCAATAAGCTACGTCAGCAGCGGGTGCGTG AGGCGCCCACGCTTTATGAGTGGGATATTAAGGTAGCGACTGTCTATGGTCTATTTTGGTTAACCTTCCTGATCCCATGT GGTTGCTTAGCACTTATAGGGTGCTATTTGCTATCTGGCGATACTAGCTTGGGTATAGGGTTAATTATCATGGCTTCAAT TATGTGCTTATCTGCTCGTTACCTCTGGTTTGCAGACAAACAGTACCATTATCGGCTCACCTCCGAGGGTTTAGTTACCA CCTATCATGACGCGATTCCGGATGCAGCTTACGCGGTAGTGCGGGGGCTGGCTTGGTTTGGGGTGGTGGTTTGTATTGTC GGGGTGGCCTTTTTAGGCCCAGCAGCGCTGATTGGTGCAGGCGGAATGGCTCTGGGGGCATTTTTCTTTACTGGTTTTAA AAATGTAGAGACAACTTATGAGAGCCCTATAAAAAATGGGCATCGTCATTTGATTAAGGTAACGCGGAATCGTCCATTTA TTGCCTGCCAATCGGATGTACGAACAATGGGCTTACGTGCAAGTATTCGTCTTCATTGCCCATTGGATAAGATGCACATT ATCTTGTCATTGCTGATGACGCAGTTACCTGATTCTGAAATCCGTGTATTTAAAAATGAGCGCGTGTTAGATGGCGTACC ATTTGCGTCATTTGAGTCAGGCGAACCTGCCCAACTGTCAGATTTCGCCCCTGACAATCCCCAGCCTAGTTGA
Upstream 100 bases:
>100_bases AGCGGCAAGATCGTCAAGGGCGAGAAGACATTAAGTACGAGCCGTGTGGGTAGGTTAACGATGACCGTGCAGTCCGTGGG TACAGCAAAGGAATAGCTAT
Downstream 100 bases:
>100_bases ATAAAGCGTGGACACTTAACAACAATGGCGCGGTAGTTAACTTTCGACTATATAGGTGGTTTTTATGCCGCACCCTCGTT TAATTTAGATCAGTCTTTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 290; Mature: 290
Protein sequence:
>290_residues MNKRAAPQQSASTEQETQPLDDSRYEDLPRSEFLQLPKEEQDRLNKLRQQRVREAPTLYEWDIKVATVYGLFWLTFLIPC GCLALIGCYLLSGDTSLGIGLIIMASIMCLSARYLWFADKQYHYRLTSEGLVTTYHDAIPDAAYAVVRGLAWFGVVVCIV GVAFLGPAALIGAGGMALGAFFFTGFKNVETTYESPIKNGHRHLIKVTRNRPFIACQSDVRTMGLRASIRLHCPLDKMHI ILSLLMTQLPDSEIRVFKNERVLDGVPFASFESGEPAQLSDFAPDNPQPS
Sequences:
>Translated_290_residues MNKRAAPQQSASTEQETQPLDDSRYEDLPRSEFLQLPKEEQDRLNKLRQQRVREAPTLYEWDIKVATVYGLFWLTFLIPC GCLALIGCYLLSGDTSLGIGLIIMASIMCLSARYLWFADKQYHYRLTSEGLVTTYHDAIPDAAYAVVRGLAWFGVVVCIV GVAFLGPAALIGAGGMALGAFFFTGFKNVETTYESPIKNGHRHLIKVTRNRPFIACQSDVRTMGLRASIRLHCPLDKMHI ILSLLMTQLPDSEIRVFKNERVLDGVPFASFESGEPAQLSDFAPDNPQPS >Mature_290_residues MNKRAAPQQSASTEQETQPLDDSRYEDLPRSEFLQLPKEEQDRLNKLRQQRVREAPTLYEWDIKVATVYGLFWLTFLIPC GCLALIGCYLLSGDTSLGIGLIIMASIMCLSARYLWFADKQYHYRLTSEGLVTTYHDAIPDAAYAVVRGLAWFGVVVCIV GVAFLGPAALIGAGGMALGAFFFTGFKNVETTYESPIKNGHRHLIKVTRNRPFIACQSDVRTMGLRASIRLHCPLDKMHI ILSLLMTQLPDSEIRVFKNERVLDGVPFASFESGEPAQLSDFAPDNPQPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32396; Mature: 32396
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKRAAPQQSASTEQETQPLDDSRYEDLPRSEFLQLPKEEQDRLNKLRQQRVREAPTLYE CCCCCCCCCCCCCHHHCCCCCCCHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE WDIKVATVYGLFWLTFLIPCGCLALIGCYLLSGDTSLGIGLIIMASIMCLSARYLWFADK ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEECC QYHYRLTSEGLVTTYHDAIPDAAYAVVRGLAWFGVVVCIVGVAFLGPAALIGAGGMALGA CEEEEECCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH FFFTGFKNVETTYESPIKNGHRHLIKVTRNRPFIACQSDVRTMGLRASIRLHCPLDKMHI HHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEECCHHHHHCCEEEEEEECCHHHHHH ILSLLMTQLPDSEIRVFKNERVLDGVPFASFESGEPAQLSDFAPDNPQPS HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNKRAAPQQSASTEQETQPLDDSRYEDLPRSEFLQLPKEEQDRLNKLRQQRVREAPTLYE CCCCCCCCCCCCCHHHCCCCCCCHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE WDIKVATVYGLFWLTFLIPCGCLALIGCYLLSGDTSLGIGLIIMASIMCLSARYLWFADK ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEECC QYHYRLTSEGLVTTYHDAIPDAAYAVVRGLAWFGVVVCIVGVAFLGPAALIGAGGMALGA CEEEEECCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH FFFTGFKNVETTYESPIKNGHRHLIKVTRNRPFIACQSDVRTMGLRASIRLHCPLDKMHI HHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEECCHHHHHCCEEEEEEECCHHHHHH ILSLLMTQLPDSEIRVFKNERVLDGVPFASFESGEPAQLSDFAPDNPQPS HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA