| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597095
Identifier: 120597095
GI number: 120597095
Start: 286628
End: 287500
Strand: Direct
Name: 120597095
Synonym: Sputw3181_0264
Alternate gene names: NA
Gene position: 286628-287500 (Clockwise)
Preceding gene: 120597094
Following gene: 120597096
Centisome position: 6.09
GC content: 49.03
Gene sequence:
>873_bases ATGAATAAGAGAGCAGCGCCGCAGCAGTCGGCGTCGACAGAGCAAGACACACAACCGTTGAACGACAGTCGGTATGAAGA CCTGCCGCGCAGTGAGTTCCTGCAATTACCCCAAGAGGAGCAAGACCGGCTCAATAAGCTACGTCAGCAGCGGGTTCGCG AGGCGCCCACCCTCTATGAGTGGGATATTAAGGTAGCGACTGTGTATGGCATTGGGTGGATCATGGTCCTTATTCCGTGC GGGATTACGGCTCTAGTTGGGTTGGTGACATACTGGTATGGATTTGAGCAATGGTATTATTTTCTCATCATAGTGATGAT TTTTGGGCCATTTATGCGCTACCTCTGGTTGGCCGACAAACAGTACCATTATCGGCTTACCACCGAGGGTTTAGTTACTA CCTATCATGACGTTATACCGGATGCCGCCTACGCGGTAGTGCGGGGGCTGGCTTGGTTTGGAGTGGTGGTTTGTATTGTC GGGGTGGCCTTTTTAGGCCCGGCCGCCTTGGTCGGTGCAGGTAGTTTTGCCGTGATGGCATTTTTCTTTACTGGTTTTAA AAATGTAGAGACTACTTACGAGAGTCCTATAAAAAATGGGCATCGTCATTTGATTAAGGTAACGCGGAATCGTCCATTTA TTGCCTGCCAATCGGATGTACGAACAATGGGCTTACGTGCAAGTATCCGTCTTCATTGCCCATTGGATAAGATGCACATT ATCTTGTCATTGCTGATGACGCAGTTACCTGATTCTGAAATCCGTGTATTTAAAAATGAGCGCGTGTTAGATGGCGTACC ATTTGCGTCATTTGAGTTAGGCGAACCTGCCCAACTGTCAGATTTCGCCCCTGAGAATCCCCAGCCCAGTTAA
Upstream 100 bases:
>100_bases AGCGGCAAGATCGTCAAGAGTGAGAAAACATTAAGTACGAGCTGTGTGGGTAGGTTAACGATGACCGTGCAGTCTGTGGG TACAGCAAAGGAATAGCTAT
Downstream 100 bases:
>100_bases CGTTTTTTCTCGCGCCTGTTATTGGCGTGAGATTCGGTGTCATCAGTGGCAGCTTTGCCACCAAGATGCTAACTGGCCTT ATAGCGGCAAGATCGTCAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 290; Mature: 290
Protein sequence:
>290_residues MNKRAAPQQSASTEQDTQPLNDSRYEDLPRSEFLQLPQEEQDRLNKLRQQRVREAPTLYEWDIKVATVYGIGWIMVLIPC GITALVGLVTYWYGFEQWYYFLIIVMIFGPFMRYLWLADKQYHYRLTTEGLVTTYHDVIPDAAYAVVRGLAWFGVVVCIV GVAFLGPAALVGAGSFAVMAFFFTGFKNVETTYESPIKNGHRHLIKVTRNRPFIACQSDVRTMGLRASIRLHCPLDKMHI ILSLLMTQLPDSEIRVFKNERVLDGVPFASFELGEPAQLSDFAPENPQPS
Sequences:
>Translated_290_residues MNKRAAPQQSASTEQDTQPLNDSRYEDLPRSEFLQLPQEEQDRLNKLRQQRVREAPTLYEWDIKVATVYGIGWIMVLIPC GITALVGLVTYWYGFEQWYYFLIIVMIFGPFMRYLWLADKQYHYRLTTEGLVTTYHDVIPDAAYAVVRGLAWFGVVVCIV GVAFLGPAALVGAGSFAVMAFFFTGFKNVETTYESPIKNGHRHLIKVTRNRPFIACQSDVRTMGLRASIRLHCPLDKMHI ILSLLMTQLPDSEIRVFKNERVLDGVPFASFELGEPAQLSDFAPENPQPS >Mature_290_residues MNKRAAPQQSASTEQDTQPLNDSRYEDLPRSEFLQLPQEEQDRLNKLRQQRVREAPTLYEWDIKVATVYGIGWIMVLIPC GITALVGLVTYWYGFEQWYYFLIIVMIFGPFMRYLWLADKQYHYRLTTEGLVTTYHDVIPDAAYAVVRGLAWFGVVVCIV GVAFLGPAALVGAGSFAVMAFFFTGFKNVETTYESPIKNGHRHLIKVTRNRPFIACQSDVRTMGLRASIRLHCPLDKMHI ILSLLMTQLPDSEIRVFKNERVLDGVPFASFELGEPAQLSDFAPENPQPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33079; Mature: 33079
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKRAAPQQSASTEQDTQPLNDSRYEDLPRSEFLQLPQEEQDRLNKLRQQRVREAPTLYE CCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE WDIKVATVYGIGWIMVLIPCGITALVGLVTYWYGFEQWYYFLIIVMIFGPFMRYLWLADK ECEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QYHYRLTTEGLVTTYHDVIPDAAYAVVRGLAWFGVVVCIVGVAFLGPAALVGAGSFAVMA CEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH FFFTGFKNVETTYESPIKNGHRHLIKVTRNRPFIACQSDVRTMGLRASIRLHCPLDKMHI HHHHHHCHHHHHHHHHHHCCCCEEEEEECCCCEEEECCHHHHHCCEEEEEEECCHHHHHH ILSLLMTQLPDSEIRVFKNERVLDGVPFASFELGEPAQLSDFAPENPQPS HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNKRAAPQQSASTEQDTQPLNDSRYEDLPRSEFLQLPQEEQDRLNKLRQQRVREAPTLYE CCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEE WDIKVATVYGIGWIMVLIPCGITALVGLVTYWYGFEQWYYFLIIVMIFGPFMRYLWLADK ECEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QYHYRLTTEGLVTTYHDVIPDAAYAVVRGLAWFGVVVCIVGVAFLGPAALVGAGSFAVMA CEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH FFFTGFKNVETTYESPIKNGHRHLIKVTRNRPFIACQSDVRTMGLRASIRLHCPLDKMHI HHHHHHCHHHHHHHHHHHCCCCEEEEEECCCCEEEECCHHHHHCCEEEEEEECCHHHHHH ILSLLMTQLPDSEIRVFKNERVLDGVPFASFELGEPAQLSDFAPENPQPS HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA