Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

Click here to switch to the map view.

The map label for this gene is 120597052

Identifier: 120597052

GI number: 120597052

Start: 243803

End: 244264

Strand: Direct

Name: 120597052

Synonym: Sputw3181_0220

Alternate gene names: NA

Gene position: 243803-244264 (Clockwise)

Preceding gene: 120597051

Following gene: 120597062

Centisome position: 5.18

GC content: 41.99

Gene sequence:

>462_bases
ATGATGGCATGGATGCAAAAGCAAAGTCACAGATTAGATTATTCTACAAAACTTATCTGCCGTTACCATTGGCTATCTAC
TCGTTTTGAATTGATAGCCGAGTCGCTACTTAATGATGTTAGCGCTCCTGAAGATGCGACTCTTACTACTTTAGCGGAAA
ACCTGCCTATGATTCCCATACCGATTCAAGTAGATAGAGCAGCTTCTCCAGCGATAAAAAGGGCCTGGAGTCAGTTAGTC
TTACGTAAACACCTTTATTACTTACCGCAGAAAATCGATATTAATATTGCCAATCAAAGTTATCGAGTGCACATCTGGCC
ATTATTTCTTTGGCGTACACGTATTACTTGTGTGGCGACTGGCAGAGTTGTCGTATCCGAATGTTTGGATGTGAGAAGGC
GTCGTTCCCTCATCCGTTGGCTATATGCAAGTTTTATAGGATTGTTGCGGGTGCTAAGTTAA

Upstream 100 bases:

>100_bases
TACTACAGGCTTGCGAGTCAAGGCTGCATTTGAGGATGCTGAGGTCATTATTCACCAAGATCCGGTGAAACTTGAAGAGT
GAAATATAAAATAGGAGCAA

Downstream 100 bases:

>100_bases
AATCGCTAATTGTTTCAACTGACCCGTCCTAAATATTCATCGCTTTTCACTGATAAATATGAAGAGTGCTATAAATCAAC
ACTCCATTAATCCATCGACA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MMAWMQKQSHRLDYSTKLICRYHWLSTRFELIAESLLNDVSAPEDATLTTLAENLPMIPIPIQVDRAASPAIKRAWSQLV
LRKHLYYLPQKIDINIANQSYRVHIWPLFLWRTRITCVATGRVVVSECLDVRRRRSLIRWLYASFIGLLRVLS

Sequences:

>Translated_153_residues
MMAWMQKQSHRLDYSTKLICRYHWLSTRFELIAESLLNDVSAPEDATLTTLAENLPMIPIPIQVDRAASPAIKRAWSQLV
LRKHLYYLPQKIDINIANQSYRVHIWPLFLWRTRITCVATGRVVVSECLDVRRRRSLIRWLYASFIGLLRVLS
>Mature_153_residues
MMAWMQKQSHRLDYSTKLICRYHWLSTRFELIAESLLNDVSAPEDATLTTLAENLPMIPIPIQVDRAASPAIKRAWSQLV
LRKHLYYLPQKIDINIANQSYRVHIWPLFLWRTRITCVATGRVVVSECLDVRRRRSLIRWLYASFIGLLRVLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17979; Mature: 17979

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAWMQKQSHRLDYSTKLICRYHWLSTRFELIAESLLNDVSAPEDATLTTLAENLPMIPI
CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCC
PIQVDRAASPAIKRAWSQLVLRKHLYYLPQKIDINIANQSYRVHIWPLFLWRTRITCVAT
CEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEHHHHHHHHHHHEEC
GRVVVSECLDVRRRRSLIRWLYASFIGLLRVLS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMAWMQKQSHRLDYSTKLICRYHWLSTRFELIAESLLNDVSAPEDATLTTLAENLPMIPI
CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCC
PIQVDRAASPAIKRAWSQLVLRKHLYYLPQKIDINIANQSYRVHIWPLFLWRTRITCVAT
CEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEHHHHHHHHHHHEEC
GRVVVSECLDVRRRRSLIRWLYASFIGLLRVLS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA