Click here to switch to the map view.

The map label for this gene is 119947277

Identifier: 119947277

GI number: 119947277

Start: 4492245

End: 4492766

Strand: Direct

Name: 119947277

Synonym: Ping_3681

Alternate gene names: NA

Gene position: 4492245-4492766 (Clockwise)

Preceding gene: 119947276

Following gene: 119947278

Centisome position: 98.52

GC content: 41.0

Gene sequence:

>522_bases
GTGGATGTTTGGTTTCAAGATGAGGCACGGTTTGGCCAACAAAATACAACAACACGTGTTTGGGCAACGAAAGGTAGTCG
ACCGAGAGTAATCAGGCAGCAACAATTTATTTCTACGCATATTTATGGTGCTGTTTGCCCATCAACAGGTCAAACAGAAG
CATTAATCAGTCCTATCTTGAGTATGGAAATGATGGAGAAACATCTCCAACAGATATCATATGCGACACCCGCAGGTCGG
CATGCGCTTGTTGTAATGGATTGTGCGAGTTGGCATTCAAATAAGACCGCCATTAAATTTGATAATCTAACTATTATGCA
CCTTCCCCCCTATTCTCCAGAGCTTAATCCTATTGAACAAGTATGGGCTTGGTTGCGAGATAATGACTTAGCAAACTTCG
CATTCAAAAATTATGAAGATATAGTTGACCAGGTGAGTAGAGGTTGGAATAATTTTAGGCATCAAGTTGACCACGTAAAA
TCACTTTGCCAAAGAGACTGGGCCAATCTGATCACAAATTAA

Upstream 100 bases:

>100_bases
TCTAAACACCCTAAGCAAGACTTAGCGGCTCAGGAAGTGTTTAAAAAAATTCCTAATTGAATCGATCATCATAATCCCTG
GCCATATAGCACTTGATAAG

Downstream 100 bases:

>100_bases
ATTCTTTTGGTATCAATGAAGCGGTGACAAAAAATCGTTTCTAGCAAATGATAGGAAGTCATTTATATAAATGACTAAAC
TTAAGTGGCAAAGGCAATCA

Product: ISSod10, transposase OrfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MDVWFQDEARFGQQNTTTRVWATKGSRPRVIRQQQFISTHIYGAVCPSTGQTEALISPILSMEMMEKHLQQISYATPAGR
HALVVMDCASWHSNKTAIKFDNLTIMHLPPYSPELNPIEQVWAWLRDNDLANFAFKNYEDIVDQVSRGWNNFRHQVDHVK
SLCQRDWANLITN

Sequences:

>Translated_173_residues
MDVWFQDEARFGQQNTTTRVWATKGSRPRVIRQQQFISTHIYGAVCPSTGQTEALISPILSMEMMEKHLQQISYATPAGR
HALVVMDCASWHSNKTAIKFDNLTIMHLPPYSPELNPIEQVWAWLRDNDLANFAFKNYEDIVDQVSRGWNNFRHQVDHVK
SLCQRDWANLITN
>Mature_173_residues
MDVWFQDEARFGQQNTTTRVWATKGSRPRVIRQQQFISTHIYGAVCPSTGQTEALISPILSMEMMEKHLQQISYATPAGR
HALVVMDCASWHSNKTAIKFDNLTIMHLPPYSPELNPIEQVWAWLRDNDLANFAFKNYEDIVDQVSRGWNNFRHQVDHVK
SLCQRDWANLITN

Specific function: Unknown

COG id: COG3335

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20061; Mature: 20061

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVWFQDEARFGQQNTTTRVWATKGSRPRVIRQQQFISTHIYGAVCPSTGQTEALISPIL
CCCCCCCHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHEECCCCCCHHHHHHHHH
SMEMMEKHLQQISYATPAGRHALVVMDCASWHSNKTAIKFDNLTIMHLPPYSPELNPIEQ
HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCEEEECCEEEEECCCCCCCCCHHHH
VWAWLRDNDLANFAFKNYEDIVDQVSRGWNNFRHQVDHVKSLCQRDWANLITN
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDVWFQDEARFGQQNTTTRVWATKGSRPRVIRQQQFISTHIYGAVCPSTGQTEALISPIL
CCCCCCCHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHEECCCCCCHHHHHHHHH
SMEMMEKHLQQISYATPAGRHALVVMDCASWHSNKTAIKFDNLTIMHLPPYSPELNPIEQ
HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCEEEECCEEEEECCCCCCCCCHHHH
VWAWLRDNDLANFAFKNYEDIVDQVSRGWNNFRHQVDHVKSLCQRDWANLITN
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]