| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
Click here to switch to the map view.
The map label for this gene is fhiA [H]
Identifier: 119947199
GI number: 119947199
Start: 4410413
End: 4412500
Strand: Direct
Name: fhiA [H]
Synonym: Ping_3597
Alternate gene names: 119947199
Gene position: 4410413-4412500 (Clockwise)
Preceding gene: 119947198
Following gene: 119947200
Centisome position: 96.73
GC content: 42.05
Gene sequence:
>2088_bases ATGGAACTGTTAAAAAAGTTTAAAAACATTAAATTAAGCCTAGCGATTCCAGCCACTCTGTTGATGATATTGGCAATGGT GATGCTGCCTTTACCGCCTTTTTTACTGGATATATTTTTCACTCTGAATATTGTTCTGGCGATTATCGTATTACTGGTCA GTACCACTACCAAAAGAGTATTGGATTTTTCTGTTTTTCCAACCCTGTTATTAATCGCAACACTGATGCGCTTAACCCTG AATGTTGCCTCAACACGTATCGTATTAATTGAGGGTCATAAGGGAGGCAATGCCGCAGGTGATGTTATCCAGGCTTTTGG TGATGTCGTGATCGGTGGTAACTATGTGGTCGGTATGGTGGTTTTCATTATTTTAATGATTATTAACTTTGTGGTTATTA CCAAGGGTGGCGAGCGTATTTCGGAAGTATCCGCACGTTTTACTCTAGATGCTCTACCGGGTAAACAGATGGCGATTGAT GCTGACTTAAATGCAGGATTGATCAATCAGGAACAAGCCAAAACACGCCGTCAGGAAACCGGTGATGAGGCGGAATTTTA TGGCTCAATGGATGGCGCAAGTAAATTTGTCCGAGGCGACGCCATCGCTGGCCTGCTGATTCTTTTTATCAATTTAATCG GCGGCGTGCTGATTGGTATTTTCTCCCATGATATGAGCGCTGCAGAATCCTTTCAAACATTTGCTTTGCTGACCATAGGT GACGGTATTGTTGCGCAGATACCTTCTCTGTTATTAGCCACCTCGGCAGCGGTGATTGTTACCCGGGTCAGTAATTCCGA CAGCGATATTTCACAGACCATTAAAAAACAAATCCTGTCTACACCCAGTGTTCTTTATGCCAGTGCAGGGGTCATGACGA TTATCGGCCTGGTGCCGAATATGCCGCATTTACCCTTCTTAATATTTGCTGCTCTTTTGGGTTTTGTCGGCTGGCAGCAA AGCAAAATTCAGGAGGAGTCTCAATTAGAAGAGGTGAATCAGTCGGTCAACCCGTTGCAAAGCCCTTCGGAGGAGGTACT TGATTGGCAGGTAGTAACAGATATTGAGCCGATTACCCTGACACTCGGCTTTAAACTGGTTTCGCTGCTGAACATTGAAA ATGGTGCACCACTGCTTAAAAGCATTAAAGGAACACGAAAATCTCTATCTGAGGAAGTCGGATTTTTAATACCTGAGGTC ACCATTCGCGATAATTTATCCCTCAAACCTGACGAATATGTTATTTTTATTGATGGTGAAGAGATGGAAAGAGGCACTGT CAAAACGGGCTATTTAATGGCAGTTTCATCCGATGACAGTTTTGGTTCAATAGATGGCATTATCGGACAAGATCCCGCTT ATTTGATGCCCGCACTGTGGATCACGCCGGAGAATAAGTCACTTGCGATTAATTACGGTTATCAGGTGATTAGTTTAGCC GACGTAATTGCTACGCATATCAACAAGGTATTAAGCGCGAATCTGGCCAGTATTTTTAACTATGACGATATAAAAGCAAT GAACGATAAACTTGGACTGATTCACCCGCAACTGTCCGAATCATTGAGTGCTGCCGTCACACCGGGGTTACAGTTACAAA TCATTAAAAATCTGCTTATTGATCAAGTCCCGGTTAAAAATAAAAAGGTCATTGCCAATACTATTCTTGATAGCATCAAT AAAACCAAAGACCCGATTCTTATTTCATCGGATGTTCGCGCAGCGTTGAAACGCACCATCTTAAGTCTAATCAGTCCGGA CAGTAAAACCCTTGACCTGTTTGTCTTAAGCAGTGAATTAGATAATATTCTGCGTAACGCAATCGCTCAGGTTCAGACGC AAAATCCACAGACCAGTTTGGATGAAGTCCCTATCGATCCTAATTTGTTAGCCCAACTACAGCAAAATTTACCTAATATC ACTCAGCAAATGATGCAGCAGGGACTGGTACCTATTTTATTGGTATCACCAACGGTAAGACCTATGATGAGTAAATTTTC CCGCGCATTTTCACGCGATTTAATTGTTTTATCATTTAATGAGATTGCCGATGATTATCAAATTAACGCCATTGGCAATT TAGATTAA
Upstream 100 bases:
>100_bases TACTGTCCTATGTTATGCAACTGCGGCGTTTTAAGAAAAATGAAATCGATAAACCGGCTCATTTACCTAACTTTGTTATG CCAAAAGGATTCCAATTTTA
Downstream 100 bases:
>100_bases AAGACAGACTAATTTGCTTAAATTATAAAAAAAACGCTATATTGCTACATAAAAAAAAATGAAATGAAAAATTTCTTCGT TTATATAAAAAGAAGGTAAA
Product: type III secretion FHIPEP protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 695; Mature: 695
Protein sequence:
>695_residues MELLKKFKNIKLSLAIPATLLMILAMVMLPLPPFLLDIFFTLNIVLAIIVLLVSTTTKRVLDFSVFPTLLLIATLMRLTL NVASTRIVLIEGHKGGNAAGDVIQAFGDVVIGGNYVVGMVVFIILMIINFVVITKGGERISEVSARFTLDALPGKQMAID ADLNAGLINQEQAKTRRQETGDEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGVLIGIFSHDMSAAESFQTFALLTIG DGIVAQIPSLLLATSAAVIVTRVSNSDSDISQTIKKQILSTPSVLYASAGVMTIIGLVPNMPHLPFLIFAALLGFVGWQQ SKIQEESQLEEVNQSVNPLQSPSEEVLDWQVVTDIEPITLTLGFKLVSLLNIENGAPLLKSIKGTRKSLSEEVGFLIPEV TIRDNLSLKPDEYVIFIDGEEMERGTVKTGYLMAVSSDDSFGSIDGIIGQDPAYLMPALWITPENKSLAINYGYQVISLA DVIATHINKVLSANLASIFNYDDIKAMNDKLGLIHPQLSESLSAAVTPGLQLQIIKNLLIDQVPVKNKKVIANTILDSIN KTKDPILISSDVRAALKRTILSLISPDSKTLDLFVLSSELDNILRNAIAQVQTQNPQTSLDEVPIDPNLLAQLQQNLPNI TQQMMQQGLVPILLVSPTVRPMMSKFSRAFSRDLIVLSFNEIADDYQINAIGNLD
Sequences:
>Translated_695_residues MELLKKFKNIKLSLAIPATLLMILAMVMLPLPPFLLDIFFTLNIVLAIIVLLVSTTTKRVLDFSVFPTLLLIATLMRLTL NVASTRIVLIEGHKGGNAAGDVIQAFGDVVIGGNYVVGMVVFIILMIINFVVITKGGERISEVSARFTLDALPGKQMAID ADLNAGLINQEQAKTRRQETGDEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGVLIGIFSHDMSAAESFQTFALLTIG DGIVAQIPSLLLATSAAVIVTRVSNSDSDISQTIKKQILSTPSVLYASAGVMTIIGLVPNMPHLPFLIFAALLGFVGWQQ SKIQEESQLEEVNQSVNPLQSPSEEVLDWQVVTDIEPITLTLGFKLVSLLNIENGAPLLKSIKGTRKSLSEEVGFLIPEV TIRDNLSLKPDEYVIFIDGEEMERGTVKTGYLMAVSSDDSFGSIDGIIGQDPAYLMPALWITPENKSLAINYGYQVISLA DVIATHINKVLSANLASIFNYDDIKAMNDKLGLIHPQLSESLSAAVTPGLQLQIIKNLLIDQVPVKNKKVIANTILDSIN KTKDPILISSDVRAALKRTILSLISPDSKTLDLFVLSSELDNILRNAIAQVQTQNPQTSLDEVPIDPNLLAQLQQNLPNI TQQMMQQGLVPILLVSPTVRPMMSKFSRAFSRDLIVLSFNEIADDYQINAIGNLD >Mature_695_residues MELLKKFKNIKLSLAIPATLLMILAMVMLPLPPFLLDIFFTLNIVLAIIVLLVSTTTKRVLDFSVFPTLLLIATLMRLTL NVASTRIVLIEGHKGGNAAGDVIQAFGDVVIGGNYVVGMVVFIILMIINFVVITKGGERISEVSARFTLDALPGKQMAID ADLNAGLINQEQAKTRRQETGDEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGVLIGIFSHDMSAAESFQTFALLTIG DGIVAQIPSLLLATSAAVIVTRVSNSDSDISQTIKKQILSTPSVLYASAGVMTIIGLVPNMPHLPFLIFAALLGFVGWQQ SKIQEESQLEEVNQSVNPLQSPSEEVLDWQVVTDIEPITLTLGFKLVSLLNIENGAPLLKSIKGTRKSLSEEVGFLIPEV TIRDNLSLKPDEYVIFIDGEEMERGTVKTGYLMAVSSDDSFGSIDGIIGQDPAYLMPALWITPENKSLAINYGYQVISLA DVIATHINKVLSANLASIFNYDDIKAMNDKLGLIHPQLSESLSAAVTPGLQLQIIKNLLIDQVPVKNKKVIANTILDSIN KTKDPILISSDVRAALKRTILSLISPDSKTLDLFVLSSELDNILRNAIAQVQTQNPQTSLDEVPIDPNLLAQLQQNLPNI TQQMMQQGLVPILLVSPTVRPMMSKFSRAFSRDLIVLSFNEIADDYQINAIGNLD
Specific function: Not Known. [C]
COG id: COG1298
COG function: function code NU; Flagellar biosynthesis pathway, component FlhA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family [H]
Homologues:
Organism=Escherichia coli, GI1788187, Length=684, Percent_Identity=42.3976608187134, Blast_Score=510, Evalue=1e-145,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001712 [H]
Pfam domain/function: PF00771 FHIPEP [H]
EC number: NA
Molecular weight: Translated: 75544; Mature: 75544
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: PS00994 FHIPEP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELLKKFKNIKLSLAIPATLLMILAMVMLPLPPFLLDIFFTLNIVLAIIVLLVSTTTKRV CHHHHHHHCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDFSVFPTLLLIATLMRLTLNVASTRIVLIEGHKGGNAAGDVIQAFGDVVIGGNYVVGMV HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHCCEEECCCHHHHHH VFIILMIINFVVITKGGERISEVSARFTLDALPGKQMAIDADLNAGLINQEQAKTRRQET HHHHHHHHHHHEECCCCHHHHHHHHHEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHC GDEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGVLIGIFSHDMSAAESFQTFALLTIG CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEC DGIVAQIPSLLLATSAAVIVTRVSNSDSDISQTIKKQILSTPSVLYASAGVMTIIGLVPN CCHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC MPHLPFLIFAALLGFVGWQQSKIQEESQLEEVNQSVNPLQSPSEEVLDWQVVTDIEPITL CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCEEEECCCCCEEE TLGFKLVSLLNIENGAPLLKSIKGTRKSLSEEVGFLIPEVTIRDNLSLKPDEYVIFIDGE EHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEECC EMERGTVKTGYLMAVSSDDSFGSIDGIIGQDPAYLMPALWITPENKSLAINYGYQVISLA CCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHCCEEEECCCCCEEEEECCCHHHHHH DVIATHINKVLSANLASIFNYDDIKAMNDKLGLIHPQLSESLSAAVTPGLQLQIIKNLLI HHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH DQVPVKNKKVIANTILDSINKTKDPILISSDVRAALKRTILSLISPDSKTLDLFVLSSEL CCCCCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHH DNILRNAIAQVQTQNPQTSLDEVPIDPNLLAQLQQNLPNITQQMMQQGLVPILLVSPTVR HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCEEEEECCCHH PMMSKFSRAFSRDLIVLSFNEIADDYQINAIGNLD HHHHHHHHHHCCCEEEEEEHHHCCCEEEEEECCCC >Mature Secondary Structure MELLKKFKNIKLSLAIPATLLMILAMVMLPLPPFLLDIFFTLNIVLAIIVLLVSTTTKRV CHHHHHHHCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDFSVFPTLLLIATLMRLTLNVASTRIVLIEGHKGGNAAGDVIQAFGDVVIGGNYVVGMV HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHCCEEECCCHHHHHH VFIILMIINFVVITKGGERISEVSARFTLDALPGKQMAIDADLNAGLINQEQAKTRRQET HHHHHHHHHHHEECCCCHHHHHHHHHEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHC GDEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGVLIGIFSHDMSAAESFQTFALLTIG CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEC DGIVAQIPSLLLATSAAVIVTRVSNSDSDISQTIKKQILSTPSVLYASAGVMTIIGLVPN CCHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC MPHLPFLIFAALLGFVGWQQSKIQEESQLEEVNQSVNPLQSPSEEVLDWQVVTDIEPITL CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCEEEECCCCCEEE TLGFKLVSLLNIENGAPLLKSIKGTRKSLSEEVGFLIPEVTIRDNLSLKPDEYVIFIDGE EHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEECC EMERGTVKTGYLMAVSSDDSFGSIDGIIGQDPAYLMPALWITPENKSLAINYGYQVISLA CCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHCCEEEECCCCCEEEEECCCHHHHHH DVIATHINKVLSANLASIFNYDDIKAMNDKLGLIHPQLSESLSAAVTPGLQLQIIKNLLI HHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH DQVPVKNKKVIANTILDSINKTKDPILISSDVRAALKRTILSLISPDSKTLDLFVLSSEL CCCCCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHH DNILRNAIAQVQTQNPQTSLDEVPIDPNLLAQLQQNLPNITQQMMQQGLVPILLVSPTVR HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCEEEEECCCHH PMMSKFSRAFSRDLIVLSFNEIADDYQINAIGNLD HHHHHHHHHHCCCEEEEEEHHHCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7596361; 9278503 [H]