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The map label for this gene is yafD [C]

Identifier: 119946933

GI number: 119946933

Start: 4108110

End: 4108988

Strand: Direct

Name: yafD [C]

Synonym: Ping_3327

Alternate gene names: 119946933

Gene position: 4108110-4108988 (Clockwise)

Preceding gene: 119946929

Following gene: 119946942

Centisome position: 90.1

GC content: 39.02

Gene sequence:

>879_bases
ATGAAACGCAATCTCACACTTCTCTCTACAAAAGTGATACTGACAGTCTATTTACCCATTGTGATTATCCTGATCGGAGT
ATTAGCGACTTTCCCCAAATCACCGCAGTATTTAACCGTATCGGATAATAATGAACAGCTTTATTTACAAAGCTGCCCTG
AACTTACGGCAGTCAAACCGGCTTCCGGTTTAACACAAAAACTCGGACTTCCCTTTACCCTGTTGAATTGGAATATCTTC
AAACAACAAAATATAAACTGGCAAAAAACGCTGCAAAAATGGAGTCAAAAATCTGATCTGCTTACTCTGCAGGAGATAAA
ATATTCGCCCGCATTTATAAATTTCAGCAGGATTAACAGCTTTTTTTATTTTCAAAATAACGCATTCCAGTATCAGAATG
TTGTCTATGGGGTGAATACACTCAGTAAAGTTAGACCAAGTTATGTTTGCGGCACACGCTTTGGTGAGCCTTGGACAATT
ATCCCAAAAACAGGATTAGCAACCATCTATCCCTTAGATAACCTCCCGGATTCATTATTACTTATCAATATTCATGGTGT
GAATTTCACTTTTACCGCCGCCCCCCTTGTTGATCAGATACAACCTTACTTAACACTGATCAAATCTCATGCCGGTCCGG
TAATATTCAGTGGCGATTTTAATACTTGGTCTGCTCCTCGCTTAGAGCAGGTTGCTAAAATATTACAACAAGCGGATTTT
CAAGAGGTATTATTTGAAAATGATCGACGTACTACTGTTTTTGGAAAGCCCCTGGATCATATTTATTATCGCGGGTTACG
GGTGGTAGATAGCGAAAACTGGGCAACTAAAACATCGGATCATAATCCTCAATTTGTTACTTTTACACTCAAGAAGTAG

Upstream 100 bases:

>100_bases
AAAGTGTTCTTTCTAATGGCATAATGATGACTTAAATATTAATGAACAGAATGCCTAATATAACCGTATAATCCCTCGCC
ATCAATAAGAAGATGAATAG

Downstream 100 bases:

>100_bases
GCAATGAAAATAAAGTGATTGACCGGATTCAGGTTGGATCAAGAATGAGTGCGTTATACAGAAACGAAAAAATAATCGAA
ACTATAACACCTTTGCCTAT

Product: endonuclease/exonuclease/phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MKRNLTLLSTKVILTVYLPIVIILIGVLATFPKSPQYLTVSDNNEQLYLQSCPELTAVKPASGLTQKLGLPFTLLNWNIF
KQQNINWQKTLQKWSQKSDLLTLQEIKYSPAFINFSRINSFFYFQNNAFQYQNVVYGVNTLSKVRPSYVCGTRFGEPWTI
IPKTGLATIYPLDNLPDSLLLINIHGVNFTFTAAPLVDQIQPYLTLIKSHAGPVIFSGDFNTWSAPRLEQVAKILQQADF
QEVLFENDRRTTVFGKPLDHIYYRGLRVVDSENWATKTSDHNPQFVTFTLKK

Sequences:

>Translated_292_residues
MKRNLTLLSTKVILTVYLPIVIILIGVLATFPKSPQYLTVSDNNEQLYLQSCPELTAVKPASGLTQKLGLPFTLLNWNIF
KQQNINWQKTLQKWSQKSDLLTLQEIKYSPAFINFSRINSFFYFQNNAFQYQNVVYGVNTLSKVRPSYVCGTRFGEPWTI
IPKTGLATIYPLDNLPDSLLLINIHGVNFTFTAAPLVDQIQPYLTLIKSHAGPVIFSGDFNTWSAPRLEQVAKILQQADF
QEVLFENDRRTTVFGKPLDHIYYRGLRVVDSENWATKTSDHNPQFVTFTLKK
>Mature_292_residues
MKRNLTLLSTKVILTVYLPIVIILIGVLATFPKSPQYLTVSDNNEQLYLQSCPELTAVKPASGLTQKLGLPFTLLNWNIF
KQQNINWQKTLQKWSQKSDLLTLQEIKYSPAFINFSRINSFFYFQNNAFQYQNVVYGVNTLSKVRPSYVCGTRFGEPWTI
IPKTGLATIYPLDNLPDSLLLINIHGVNFTFTAAPLVDQIQPYLTLIKSHAGPVIFSGDFNTWSAPRLEQVAKILQQADF
QEVLFENDRRTTVFGKPLDHIYYRGLRVVDSENWATKTSDHNPQFVTFTLKK

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=221, Percent_Identity=37.5565610859729, Blast_Score=163, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 33404; Mature: 33404

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRNLTLLSTKVILTVYLPIVIILIGVLATFPKSPQYLTVSDNNEQLYLQSCPELTAVKP
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCEEECC
ASGLTQKLGLPFTLLNWNIFKQQNINWQKTLQKWSQKSDLLTLQEIKYSPAFINFSRINS
CCCCHHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCEEHHHCCCCCCEEEHHHCCE
FFYFQNNAFQYQNVVYGVNTLSKVRPSYVCGTRFGEPWTIIPKTGLATIYPLDNLPDSLL
EEEEECCCEEECCEEEECHHHHHCCCCEEECCCCCCCEEEEECCCCEEEEECCCCCCCEE
LINIHGVNFTFTAAPLVDQIQPYLTLIKSHAGPVIFSGDFNTWSAPRLEQVAKILQQADF
EEEEECCCEEEECCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCH
QEVLFENDRRTTVFGKPLDHIYYRGLRVVDSENWATKTSDHNPQFVTFTLKK
HHHHHCCCCEEEEECCCHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MKRNLTLLSTKVILTVYLPIVIILIGVLATFPKSPQYLTVSDNNEQLYLQSCPELTAVKP
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCEEECC
ASGLTQKLGLPFTLLNWNIFKQQNINWQKTLQKWSQKSDLLTLQEIKYSPAFINFSRINS
CCCCHHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCEEHHHCCCCCCEEEHHHCCE
FFYFQNNAFQYQNVVYGVNTLSKVRPSYVCGTRFGEPWTIIPKTGLATIYPLDNLPDSLL
EEEEECCCEEECCEEEECHHHHHCCCCEEECCCCCCCEEEEECCCCEEEEECCCCCCCEE
LINIHGVNFTFTAAPLVDQIQPYLTLIKSHAGPVIFSGDFNTWSAPRLEQVAKILQQADF
EEEEECCCEEEECCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCH
QEVLFENDRRTTVFGKPLDHIYYRGLRVVDSENWATKTSDHNPQFVTFTLKK
HHHHHCCCCEEEEECCCHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA