Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 119946743

GI number: 119946743

Start: 3853361

End: 3855694

Strand: Direct

Name: yciR [C]

Synonym: Ping_3129

Alternate gene names: 119946743

Gene position: 3853361-3855694 (Clockwise)

Preceding gene: 119946742

Following gene: 119946745

Centisome position: 84.51

GC content: 42.97

Gene sequence:

>2334_bases
ATGAAGACACCTGCAAAGTCAACCAAGCTATCCAGCAAAACGTTACGCCGGCGCGCGGAAGCACAACTGAAAACACAAAC
AGAAATCAAACAAACTATTCCTAGCGACTATGCAGCCAAAAAGATGATACACGAATTGCAGGTTCATCAGATTGAACTAG
AAATGCAGAATGAGGAGTTAAAGCAAGCACGGATAGCTGAAAAATTACATTATCGCTATACCGAATTATTTGAATTTGCA
CCGATTGGCTACTTTTCTTTTAATCTGAAGGGCGTCATCAATCAGGTTAATTTACGCGGGGCGAGCCTATTGGATATTGA
ACGCGCTAACTTGGTAGGAAAACAGTTTTCAAACTGCCTAACAGCCCAAGATCGTAATAAATTCAACCGTTGTCTGGCAA
AAGCATTTGCGGGTGATGGCATACAATCCTTTGAGGTCTTAGCACAGGTTGGCAAGCATAAGTGTTGGCTGAATATTGAA
GCCAATCTCGGCATTACCGAAACAGACTGTCTTGCGGCGGTGATTGACATTACCGACCGTAAACGCGCCGATGAAGAACT
GCTTTTTCAAAATGATGAAAAAGGAAAGCGGACTGATGAGTTAGTCATAGCTAATAAAGAACTGTTCTTTCAAAATGCAG
AAAAAGAAAAGCGGGTTGGTGAACTTCGTGTTGCCGCCACCGTATTTGAAACTCAAGAAGGTATGTTTGTCACAGATGCT
AATCTGTGTATTCTTCGTGTGAATAAAGCCTTTACCAATATTTCAGGTTACAGTGGAGAAGAGGTTATTGGGCAGTCACC
TAAGCTATTTAACTCAGGCCGCCAAGACAAAGCGTTCTATAAGGAGATGTGGAACAGTATCAACACCACCGATGCATGGA
GAGGTGAAGTCTCGAATCGCAGCAAAAGCGGTGACATCTATGCAAAGAATCTCACTATTACGGCAGTGAGAGACGGAAAA
GGGGTGGTCTCTAATTATGTTGCCACGTTTAGAGATATTACAACAAGCAAAGCTGCTTCTGAAAAAATCAATAACCTCGC
CTACTTTGACCCGCTCACTCAGTTGCCAAATCGTCGCATGCTGCTTGATAGTCTTAGACACGTCCTAACTATCAGTGCCC
GCAGCAATCAGCATTGTGCATTACTATTTCTTGATTTAGACAACTTTAAAACCCTTAACGACACCCTTGGTCACGATGTG
GGAGATTTACTCTTACAACAAGTAGCTACTCGCTTAACTGACTGTGTAAGAGAAGGCGATATCGTCGCCCGATTAGGCGG
TGATGAGTTTGTGGTGTTATTAGAAAACCTGAGCCTACAAGCGATTGAAGCGGCCAACAAAGCGAAAAAGGTGGCCAAAA
AAATCATATTTGAACTGGCTCAATACTATCAGCTCAATATGCACAGGTATCACAGCACCACCAGTATCGGCGTGACAATA
TTCAGTGGGAATGAAACGGGAATAGAGGAGCTGTTAAAGCAAGCAGACATTGCTATGTATCAATCCAAGGCCGCAGGACG
CAACACCTGGCATTTCTTTAATAAAACGATGCAAGAATCTATCATTGCCCGTGCAGACATGGAGCGGGATCTACGCAAAG
CGATTGAAGACAATCAATTCCAGCTACATTATCAAGCCCAGGTAAGCAGTTCTGGCCAAACATTAGGGGCTGAAGCCTTA
ATCCGTTGGCAACATCCAGAGCGTGGTCAGGTTTCACCCTTTAACTTCATTCCTTTAGCCGAAGAAACAGGACTTATTTT
ACCGATAGGACAATGGGTATTAGACTCGGCCTGCGCTCAGCTTAAAGCATGGCAAAAAAACCCACTGACACAAGACCTTG
TACTCGCCGTCAATATCAGTGCTAAGCAACTTCATCAAGAAGACTTTGTAGAACAGGTCAAAGCTACCCTAAAACGGCAT
GATATTAACCCTGCACGACTCAAGCTAGAACTAACCGAAAGTATGTTGGTCGAAAATATCAGCGACATCATTACCAAAAT
GAATATTCTGAGCAAAATAGGTATTTCATTCTCATTAGATGACTTTGGGACGGGTTATTCTTCTTTACAATATCTAAAAA
AATTGCCTCTCAATCAAATAAAGATAGACCAGTCATTTGTGCGCGACCTTATTACGGATGCCAGTGACAGAGCGATTGTA
CGCACCATCATTACCATGTCGCATAGCTTAGATATTAGCGTTATTGCCGAGGGTGTCGAGACAGTAGAGGAAAGACAATA
CTTGTTGGATAACGGCTGTACGCATTATCAAGGCTATCTGTTTAGTAAGCCCGTGCCGATTAATGAGTTTGAAGTCTTGC
TTAAGAAAGGCTGA

Upstream 100 bases:

>100_bases
GTACCCAAGAGAATGTGATTGACGGCGTGGTGATAACCTTCACCAATATTAGTGAAGCCAAACTGCTTGAGTCAGAATTA
CGCAAGACGAGGTGCAAAAC

Downstream 100 bases:

>100_bases
TTGCTAATCGTTCAAAAAGGAGTAAGTGAAAGAAAAGAGCATGAATTGCGTTTTATATGCCAAGCTTACAGGTTAGCTTT
TACTAGCCGTTCCCACCAAA

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 777; Mature: 777

Protein sequence:

>777_residues
MKTPAKSTKLSSKTLRRRAEAQLKTQTEIKQTIPSDYAAKKMIHELQVHQIELEMQNEELKQARIAEKLHYRYTELFEFA
PIGYFSFNLKGVINQVNLRGASLLDIERANLVGKQFSNCLTAQDRNKFNRCLAKAFAGDGIQSFEVLAQVGKHKCWLNIE
ANLGITETDCLAAVIDITDRKRADEELLFQNDEKGKRTDELVIANKELFFQNAEKEKRVGELRVAATVFETQEGMFVTDA
NLCILRVNKAFTNISGYSGEEVIGQSPKLFNSGRQDKAFYKEMWNSINTTDAWRGEVSNRSKSGDIYAKNLTITAVRDGK
GVVSNYVATFRDITTSKAASEKINNLAYFDPLTQLPNRRMLLDSLRHVLTISARSNQHCALLFLDLDNFKTLNDTLGHDV
GDLLLQQVATRLTDCVREGDIVARLGGDEFVVLLENLSLQAIEAANKAKKVAKKIIFELAQYYQLNMHRYHSTTSIGVTI
FSGNETGIEELLKQADIAMYQSKAAGRNTWHFFNKTMQESIIARADMERDLRKAIEDNQFQLHYQAQVSSSGQTLGAEAL
IRWQHPERGQVSPFNFIPLAEETGLILPIGQWVLDSACAQLKAWQKNPLTQDLVLAVNISAKQLHQEDFVEQVKATLKRH
DINPARLKLELTESMLVENISDIITKMNILSKIGISFSLDDFGTGYSSLQYLKKLPLNQIKIDQSFVRDLITDASDRAIV
RTIITMSHSLDISVIAEGVETVEERQYLLDNGCTHYQGYLFSKPVPINEFEVLLKKG

Sequences:

>Translated_777_residues
MKTPAKSTKLSSKTLRRRAEAQLKTQTEIKQTIPSDYAAKKMIHELQVHQIELEMQNEELKQARIAEKLHYRYTELFEFA
PIGYFSFNLKGVINQVNLRGASLLDIERANLVGKQFSNCLTAQDRNKFNRCLAKAFAGDGIQSFEVLAQVGKHKCWLNIE
ANLGITETDCLAAVIDITDRKRADEELLFQNDEKGKRTDELVIANKELFFQNAEKEKRVGELRVAATVFETQEGMFVTDA
NLCILRVNKAFTNISGYSGEEVIGQSPKLFNSGRQDKAFYKEMWNSINTTDAWRGEVSNRSKSGDIYAKNLTITAVRDGK
GVVSNYVATFRDITTSKAASEKINNLAYFDPLTQLPNRRMLLDSLRHVLTISARSNQHCALLFLDLDNFKTLNDTLGHDV
GDLLLQQVATRLTDCVREGDIVARLGGDEFVVLLENLSLQAIEAANKAKKVAKKIIFELAQYYQLNMHRYHSTTSIGVTI
FSGNETGIEELLKQADIAMYQSKAAGRNTWHFFNKTMQESIIARADMERDLRKAIEDNQFQLHYQAQVSSSGQTLGAEAL
IRWQHPERGQVSPFNFIPLAEETGLILPIGQWVLDSACAQLKAWQKNPLTQDLVLAVNISAKQLHQEDFVEQVKATLKRH
DINPARLKLELTESMLVENISDIITKMNILSKIGISFSLDDFGTGYSSLQYLKKLPLNQIKIDQSFVRDLITDASDRAIV
RTIITMSHSLDISVIAEGVETVEERQYLLDNGCTHYQGYLFSKPVPINEFEVLLKKG
>Mature_777_residues
MKTPAKSTKLSSKTLRRRAEAQLKTQTEIKQTIPSDYAAKKMIHELQVHQIELEMQNEELKQARIAEKLHYRYTELFEFA
PIGYFSFNLKGVINQVNLRGASLLDIERANLVGKQFSNCLTAQDRNKFNRCLAKAFAGDGIQSFEVLAQVGKHKCWLNIE
ANLGITETDCLAAVIDITDRKRADEELLFQNDEKGKRTDELVIANKELFFQNAEKEKRVGELRVAATVFETQEGMFVTDA
NLCILRVNKAFTNISGYSGEEVIGQSPKLFNSGRQDKAFYKEMWNSINTTDAWRGEVSNRSKSGDIYAKNLTITAVRDGK
GVVSNYVATFRDITTSKAASEKINNLAYFDPLTQLPNRRMLLDSLRHVLTISARSNQHCALLFLDLDNFKTLNDTLGHDV
GDLLLQQVATRLTDCVREGDIVARLGGDEFVVLLENLSLQAIEAANKAKKVAKKIIFELAQYYQLNMHRYHSTTSIGVTI
FSGNETGIEELLKQADIAMYQSKAAGRNTWHFFNKTMQESIIARADMERDLRKAIEDNQFQLHYQAQVSSSGQTLGAEAL
IRWQHPERGQVSPFNFIPLAEETGLILPIGQWVLDSACAQLKAWQKNPLTQDLVLAVNISAKQLHQEDFVEQVKATLKRH
DINPARLKLELTESMLVENISDIITKMNILSKIGISFSLDDFGTGYSSLQYLKKLPLNQIKIDQSFVRDLITDASDRAIV
RTIITMSHSLDISVIAEGVETVEERQYLLDNGCTHYQGYLFSKPVPINEFEVLLKKG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=567, Percent_Identity=34.0388007054674, Blast_Score=329, Evalue=4e-91,
Organism=Escherichia coli, GI87081921, Length=457, Percent_Identity=33.6980306345733, Blast_Score=243, Evalue=5e-65,
Organism=Escherichia coli, GI226510982, Length=425, Percent_Identity=31.0588235294118, Blast_Score=208, Evalue=9e-55,
Organism=Escherichia coli, GI87081845, Length=270, Percent_Identity=37.037037037037, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1787055, Length=249, Percent_Identity=35.3413654618474, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=34.8178137651822, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1786507, Length=302, Percent_Identity=30.794701986755, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=34.8360655737705, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1788502, Length=250, Percent_Identity=32, Blast_Score=139, Evalue=1e-33,
Organism=Escherichia coli, GI1788849, Length=473, Percent_Identity=26.6384778012685, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI87081980, Length=250, Percent_Identity=30.4, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI1788381, Length=340, Percent_Identity=29.1176470588235, Blast_Score=128, Evalue=2e-30,
Organism=Escherichia coli, GI87082096, Length=434, Percent_Identity=25.8064516129032, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87081977, Length=189, Percent_Identity=31.2169312169312, Blast_Score=106, Evalue=7e-24,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=37.9120879120879, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI145693134, Length=159, Percent_Identity=34.5911949685535, Blast_Score=90, Evalue=6e-19,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=32.5842696629214, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1787262, Length=175, Percent_Identity=32.5714285714286, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1787816, Length=183, Percent_Identity=32.2404371584699, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=32.7272727272727, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=33.9285714285714, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI1789650, Length=447, Percent_Identity=20.5816554809843, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=35.1851851851852, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787410, Length=153, Percent_Identity=30.0653594771242, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=106, Percent_Identity=33.9622641509434, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=30.5389221556886, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 87754; Mature: 87754

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPAKSTKLSSKTLRRRAEAQLKTQTEIKQTIPSDYAAKKMIHELQVHQIELEMQNEEL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEECHHHH
KQARIAEKLHYRYTELFEFAPIGYFSFNLKGVINQVNLRGASLLDIERANLVGKQFSNCL
HHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHH
TAQDRNKFNRCLAKAFAGDGIQSFEVLAQVGKHKCWLNIEANLGITETDCLAAVIDITDR
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCC
KRADEELLFQNDEKGKRTDELVIANKELFFQNAEKEKRVGELRVAATVFETQEGMFVTDA
CCCCHHHHCCCCCCCCCCCEEEEECHHHHHCCCHHHHHHHHHHHHHEEEECCCCEEEEEC
NLCILRVNKAFTNISGYSGEEVIGQSPKLFNSGRQDKAFYKEMWNSINTTDAWRGEVSNR
CEEEEEECHHHHCCCCCCCCHHHCCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
SKSGDIYAKNLTITAVRDGKGVVSNYVATFRDITTSKAASEKINNLAYFDPLTQLPNRRM
CCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHCCCCHH
LLDSLRHVLTISARSNQHCALLFLDLDNFKTLNDTLGHDVGDLLLQQVATRLTDCVREGD
HHHHHHHHEEEECCCCCCEEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
IVARLGGDEFVVLLENLSLQAIEAANKAKKVAKKIIFELAQYYQLNMHRYHSTTSIGVTI
EEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
FSGNETGIEELLKQADIAMYQSKAAGRNTWHFFNKTMQESIIARADMERDLRKAIEDNQF
ECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
QLHYQAQVSSSGQTLGAEALIRWQHPERGQVSPFNFIPLAEETGLILPIGQWVLDSACAQ
EEEEEEEECCCCCCCCCHHEEEECCCCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHH
LKAWQKNPLTQDLVLAVNISAKQLHQEDFVEQVKATLKRHDINPARLKLELTESMLVENI
HHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEHHHHHHHHHH
SDIITKMNILSKIGISFSLDDFGTGYSSLQYLKKLPLNQIKIDQSFVRDLITDASDRAIV
HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCHHHH
RTIITMSHSLDISVIAEGVETVEERQYLLDNGCTHYQGYLFSKPVPINEFEVLLKKG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHEECC
>Mature Secondary Structure
MKTPAKSTKLSSKTLRRRAEAQLKTQTEIKQTIPSDYAAKKMIHELQVHQIELEMQNEEL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEECHHHH
KQARIAEKLHYRYTELFEFAPIGYFSFNLKGVINQVNLRGASLLDIERANLVGKQFSNCL
HHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHH
TAQDRNKFNRCLAKAFAGDGIQSFEVLAQVGKHKCWLNIEANLGITETDCLAAVIDITDR
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCC
KRADEELLFQNDEKGKRTDELVIANKELFFQNAEKEKRVGELRVAATVFETQEGMFVTDA
CCCCHHHHCCCCCCCCCCCEEEEECHHHHHCCCHHHHHHHHHHHHHEEEECCCCEEEEEC
NLCILRVNKAFTNISGYSGEEVIGQSPKLFNSGRQDKAFYKEMWNSINTTDAWRGEVSNR
CEEEEEECHHHHCCCCCCCCHHHCCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
SKSGDIYAKNLTITAVRDGKGVVSNYVATFRDITTSKAASEKINNLAYFDPLTQLPNRRM
CCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHCCCCHH
LLDSLRHVLTISARSNQHCALLFLDLDNFKTLNDTLGHDVGDLLLQQVATRLTDCVREGD
HHHHHHHHEEEECCCCCCEEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
IVARLGGDEFVVLLENLSLQAIEAANKAKKVAKKIIFELAQYYQLNMHRYHSTTSIGVTI
EEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
FSGNETGIEELLKQADIAMYQSKAAGRNTWHFFNKTMQESIIARADMERDLRKAIEDNQF
ECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
QLHYQAQVSSSGQTLGAEALIRWQHPERGQVSPFNFIPLAEETGLILPIGQWVLDSACAQ
EEEEEEEECCCCCCCCCHHEEEECCCCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHH
LKAWQKNPLTQDLVLAVNISAKQLHQEDFVEQVKATLKRHDINPARLKLELTESMLVENI
HHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEHHHHHHHHHH
SDIITKMNILSKIGISFSLDDFGTGYSSLQYLKKLPLNQIKIDQSFVRDLITDASDRAIV
HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCEECCHHHHHHHHCCCCCHHHH
RTIITMSHSLDISVIAEGVETVEERQYLLDNGCTHYQGYLFSKPVPINEFEVLLKKG
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]