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The map label for this gene is siaP [H]

Identifier: 119946554

GI number: 119946554

Start: 3617521

End: 3618537

Strand: Direct

Name: siaP [H]

Synonym: Ping_2933

Alternate gene names: 119946554

Gene position: 3617521-3618537 (Clockwise)

Preceding gene: 119946550

Following gene: 119946555

Centisome position: 79.34

GC content: 43.17

Gene sequence:

>1017_bases
ATGAAAAAGCTTCACAAGAAAATATTATCTGCTGTTATTGCAAGTACCCTTTCAACCTCTGCACTGGCTGCAGATTTTGT
ATTTAAAATGCAATCCTCAGATCCTTCTGGTGATAAAAACTACCAAGTTCAACAGCAATGGGCTGAACGTGTTGGGGTAA
TGTCCGGTGGGCGTATCGATATTAAATTATTACCCGTAGGCAGTATTGTTAAACATACTGAAACCCTGGGCGCAATTAAA
ATGGGTATATTAGATGGTCATATAACCGCGACAGGTTATTTCTCGGGCCAGGATCCGGCTTTTGGTTTAATTGGTAATAT
GGTGGGGGCATGGTCAGATACAACACAGCTCTTACAATATATGAACTACGGCGGTGGTAATGAGTTAATGACTGAGTTAT
ACACCCCTTATGGCGTGCACTTTGTCGGCGCTTCAACAACGGGTGTAGAATCTTTTGTCTCTAAAGTGCCCCTTAATGGT
GTCGATGATTTAAAAGGCTTAAAACTCCGCGCACCAGAAGGATTAGTGCAGCTGGTATTTGCTGCCGCTGGTGCATCGCC
AGTTAATCTACCGGGCTCTGAAGTCTTCACCGGCCTTAGCAAAGGGGTTATTGATGCAGCGGATTATACGGTCTTCTCAA
CCAATCAAACCAATGGCTTAAATGATATTGCTCCGCATCCGGTACAGCCGGGATTCCACTCTTTACCCTTAATAGACATC
TCCGTTAGCCAGAAAAAATGGGATAAATTACCCATAGATCTGCAGGAAATATTAACCGTATCAGTGCGTAATTTTTCTTA
CGATATGACCACCCAGCTGAAAATTGCAGACCAGGCGGCAGTCAAAATCGCACAGGCAAATCCAGATATCACTATTCATG
ACTGGTCTGCTGTTGAGCGTAAAAAATTCCGTGCCATCGCTAAAAGTCAATGGAAAGTATTTGCTGAACGTTCAGATAAT
GCGGAAAAAGTATATCAGTCAGTGACCAGCTTCTTAGGTGATAACGGTCTACTGTAA

Upstream 100 bases:

>100_bases
CCGTAAGTTACCGGTAACATTCGCATCAGTTACCGGTAACCTATTTGTGACTACGTATTTATAATTTAAATATACGCTCA
TTAAAACAAGGAATCTAAAT

Downstream 100 bases:

>100_bases
GCCGCTGTTTAACTCATTATGCAAGGGTTGATGCAACCCTTGCCCACTCTGGAAATGCATTATGTCTATTAAACACCCCG
TACCGGATCATCAACCCCCC

Product: TRAP dicarboxylate transporter- DctP subunit

Products: NA

Alternate protein names: Extracytoplasmic solute receptor protein siaP; N-acetylneuraminic-binding protein; Neu5Ac-binding protein [H]

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MKKLHKKILSAVIASTLSTSALAADFVFKMQSSDPSGDKNYQVQQQWAERVGVMSGGRIDIKLLPVGSIVKHTETLGAIK
MGILDGHITATGYFSGQDPAFGLIGNMVGAWSDTTQLLQYMNYGGGNELMTELYTPYGVHFVGASTTGVESFVSKVPLNG
VDDLKGLKLRAPEGLVQLVFAAAGASPVNLPGSEVFTGLSKGVIDAADYTVFSTNQTNGLNDIAPHPVQPGFHSLPLIDI
SVSQKKWDKLPIDLQEILTVSVRNFSYDMTTQLKIADQAAVKIAQANPDITIHDWSAVERKKFRAIAKSQWKVFAERSDN
AEKVYQSVTSFLGDNGLL

Sequences:

>Translated_338_residues
MKKLHKKILSAVIASTLSTSALAADFVFKMQSSDPSGDKNYQVQQQWAERVGVMSGGRIDIKLLPVGSIVKHTETLGAIK
MGILDGHITATGYFSGQDPAFGLIGNMVGAWSDTTQLLQYMNYGGGNELMTELYTPYGVHFVGASTTGVESFVSKVPLNG
VDDLKGLKLRAPEGLVQLVFAAAGASPVNLPGSEVFTGLSKGVIDAADYTVFSTNQTNGLNDIAPHPVQPGFHSLPLIDI
SVSQKKWDKLPIDLQEILTVSVRNFSYDMTTQLKIADQAAVKIAQANPDITIHDWSAVERKKFRAIAKSQWKVFAERSDN
AEKVYQSVTSFLGDNGLL
>Mature_338_residues
MKKLHKKILSAVIASTLSTSALAADFVFKMQSSDPSGDKNYQVQQQWAERVGVMSGGRIDIKLLPVGSIVKHTETLGAIK
MGILDGHITATGYFSGQDPAFGLIGNMVGAWSDTTQLLQYMNYGGGNELMTELYTPYGVHFVGASTTGVESFVSKVPLNG
VDDLKGLKLRAPEGLVQLVFAAAGASPVNLPGSEVFTGLSKGVIDAADYTVFSTNQTNGLNDIAPHPVQPGFHSLPLIDI
SVSQKKWDKLPIDLQEILTVSVRNFSYDMTTQLKIADQAAVKIAQANPDITIHDWSAVERKKFRAIAKSQWKVFAERSDN
AEKVYQSVTSFLGDNGLL

Specific function: Part of the tripartite ATP-independent periplasmic (TRAP) transport system siaPT involved in the uptake of sialic acid. This protein specifically binds sialic acid [H]

COG id: COG4663

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 7 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018389
- InterPro:   IPR004682 [H]

Pfam domain/function: PF03480 SBP_bac_7 [H]

EC number: NA

Molecular weight: Translated: 36496; Mature: 36496

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLHKKILSAVIASTLSTSALAADFVFKMQSSDPSGDKNYQVQQQWAERVGVMSGGRID
CHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEE
IKLLPVGSIVKHTETLGAIKMGILDGHITATGYFSGQDPAFGLIGNMVGAWSDTTQLLQY
EEEECCCHHHHHHHHHHHHHEEEEECCEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHH
MNYGGGNELMTELYTPYGVHFVGASTTGVESFVSKVPLNGVDDLKGLKLRAPEGLVQLVF
HHCCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHH
AAAGASPVNLPGSEVFTGLSKGVIDAADYTVFSTNQTNGLNDIAPHPVQPGFHSLPLIDI
HHCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
SVSQKKWDKLPIDLQEILTVSVRNFSYDMTTQLKIADQAAVKIAQANPDITIHDWSAVER
ECCHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEECHHHHEEEEECCCCEEEECCHHHHH
KKFRAIAKSQWKVFAERSDNAEKVYQSVTSFLGDNGLL
HHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKKLHKKILSAVIASTLSTSALAADFVFKMQSSDPSGDKNYQVQQQWAERVGVMSGGRID
CHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEE
IKLLPVGSIVKHTETLGAIKMGILDGHITATGYFSGQDPAFGLIGNMVGAWSDTTQLLQY
EEEECCCHHHHHHHHHHHHHEEEEECCEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHH
MNYGGGNELMTELYTPYGVHFVGASTTGVESFVSKVPLNGVDDLKGLKLRAPEGLVQLVF
HHCCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHH
AAAGASPVNLPGSEVFTGLSKGVIDAADYTVFSTNQTNGLNDIAPHPVQPGFHSLPLIDI
HHCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEE
SVSQKKWDKLPIDLQEILTVSVRNFSYDMTTQLKIADQAAVKIAQANPDITIHDWSAVER
ECCHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEECHHHHEEEEECCCCEEEECCHHHHH
KKFRAIAKSQWKVFAERSDNAEKVYQSVTSFLGDNGLL
HHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA