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The map label for this gene is ycfQ [H]

Identifier: 119946526

GI number: 119946526

Start: 3583753

End: 3584343

Strand: Reverse

Name: ycfQ [H]

Synonym: Ping_2903

Alternate gene names: 119946526

Gene position: 3584343-3583753 (Counterclockwise)

Preceding gene: 119946527

Following gene: 119946523

Centisome position: 78.61

GC content: 41.46

Gene sequence:

>591_bases
ATGAGTAAATCAGCAAAATTTGATCGCGCTGATGTTGTTGACAAAGCCACCAAGCTATATTGGGAAAAAGGTTTTCATGG
AACATCCATGCGCAACCTGCAAGATGTGGTTGATATGCGGCCAGGCAGTATCTATGCGACCTTTGGAAACAAAGAAAATT
TATTTAAAGAAGCGTTGCAACACTACGCACAAGTCAGTTTTTCTCATCTTTCGGCCTGCAAAAAAGCATCTTTATCACCC
CTTGAAGCACTGAGAACTTTTGTTAAAAGTATCCTTATGGACACGGGTAAATCAGTCCCTAGCGGTATGTGCATGCTGGT
TAAATCAGTTGCTGAACTGACCGTTGAAAATGCCGAACTGTTGTTGGAAACTAAACGATTACTGAGCCTGATAGAAAGCG
AATTTGCAGTAATCTTCAAAGAAGCGATTGAACAGGGGGAAATAAGTGTCTCTAAAGATCCAAACCATCTGGCTCAATAT
CTGCAAATTCAGATAATGGGGTTACGCACCTATGCGAGTGCTAATGATAATGCCCAGACTATTGAAGCCCTTATTGATGA
TGTTTTTGACAGCAGCATGGTTCGCGGATAA

Upstream 100 bases:

>100_bases
CATTTGTTGCCGCCTAAAAAAAATTAACATGGAATTACAAGCCTGCTCAGGTTATAATTGAACGTCCGTTCATGGCTTTG
TTTTAGAGGAGTAGTACGTT

Downstream 100 bases:

>100_bases
TTTTCTGATCCATATGATAGCAGTTAAAACGGGCAGTCTTATCTAATGTTTATACTTCTTAATAATCAAAATAGGGAAAA
ATTTAGCAGATCTTTACAAT

Product: transcriptional regulator of TetR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MSKSAKFDRADVVDKATKLYWEKGFHGTSMRNLQDVVDMRPGSIYATFGNKENLFKEALQHYAQVSFSHLSACKKASLSP
LEALRTFVKSILMDTGKSVPSGMCMLVKSVAELTVENAELLLETKRLLSLIESEFAVIFKEAIEQGEISVSKDPNHLAQY
LQIQIMGLRTYASANDNAQTIEALIDDVFDSSMVRG

Sequences:

>Translated_196_residues
MSKSAKFDRADVVDKATKLYWEKGFHGTSMRNLQDVVDMRPGSIYATFGNKENLFKEALQHYAQVSFSHLSACKKASLSP
LEALRTFVKSILMDTGKSVPSGMCMLVKSVAELTVENAELLLETKRLLSLIESEFAVIFKEAIEQGEISVSKDPNHLAQY
LQIQIMGLRTYASANDNAQTIEALIDDVFDSSMVRG
>Mature_195_residues
SKSAKFDRADVVDKATKLYWEKGFHGTSMRNLQDVVDMRPGSIYATFGNKENLFKEALQHYAQVSFSHLSACKKASLSPL
EALRTFVKSILMDTGKSVPSGMCMLVKSVAELTVENAELLLETKRLLSLIESEFAVIFKEAIEQGEISVSKDPNHLAQYL
QIQIMGLRTYASANDNAQTIEALIDDVFDSSMVRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=166, Percent_Identity=28.3132530120482, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21791; Mature: 21660

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSAKFDRADVVDKATKLYWEKGFHGTSMRNLQDVVDMRPGSIYATFGNKENLFKEALQ
CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH
HYAQVSFSHLSACKKASLSPLEALRTFVKSILMDTGKSVPSGMCMLVKSVAELTVENAEL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LLETKRLLSLIESEFAVIFKEAIEQGEISVSKDPNHLAQYLQIQIMGLRTYASANDNAQT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
IEALIDDVFDSSMVRG
HHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKSAKFDRADVVDKATKLYWEKGFHGTSMRNLQDVVDMRPGSIYATFGNKENLFKEALQ
CCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH
HYAQVSFSHLSACKKASLSPLEALRTFVKSILMDTGKSVPSGMCMLVKSVAELTVENAEL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LLETKRLLSLIESEFAVIFKEAIEQGEISVSKDPNHLAQYLQIQIMGLRTYASANDNAQT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
IEALIDDVFDSSMVRG
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]