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The map label for this gene is yhcM [H]

Identifier: 119946501

GI number: 119946501

Start: 3557215

End: 3558333

Strand: Reverse

Name: yhcM [H]

Synonym: Ping_2878

Alternate gene names: 119946501

Gene position: 3558333-3557215 (Counterclockwise)

Preceding gene: 119946504

Following gene: 119946500

Centisome position: 78.04

GC content: 38.7

Gene sequence:

>1119_bases
GTGACCCCCCTAAATTTATATCGCGCCGATTTACAAAAAAAGAACTTCTTTGAGGATCCTGCACAGGCAATTGCTATACA
GCAGCTGCAACGTTTGTATATGGATCTGCAAACACCGCCCATTGAAAATAAAAAAAGCAGCGTGTTGTCACGCTTGATTA
ACAAACTATCCACACCAACAAGCAAAAAAAAGCAATTTAAAGGGATCTATTTTTATGGCGGGGTGGGCCGTGGTAAAACT
TACCTTGTGGATCTTTTCTTTCATAGCTTACCAACAAAGCGCAAACAACGACTGCACTTCCATCACTTTATGCTTAGAGT
GCACAAAGAACTTTCTGAATTGCAGGGACAGGCGAATCCTTTAGTTAAAATTGCGCAAAAGTTCTCATTTGAAACTGATG
TTTTGTGTTTTGATGAGTTTTATGTTGATGATATAACCGATGCAATGATTTTAGCCGGCATGTTAACCGCATTATTTGAA
CAGGGCATTGTATTGGTTGCAACCTCCAATATTCACCCCGATGATCTTTATAAAAATGGTCTGCAACGCGCACGTTTTTT
GCCTGTTATTGACTTAGTTAAGGTCCATTGTGAAGTGTTCAATTTAGACGGTGGGCGCGATTATCGCATTGGCCGTTTAA
TAAACAGTGAAATTTATCACTACCCTCTAGACAGCAGTGCCTCCCTGCAGATAAAAAATGCCTTTGAAAATTTAGCGGAT
GGAGATAAAGTTTATGGACAAAATATAGAAATCAATTCCCGCCTGATCCCCAGCATCGCCAATAGTATTGATACCTTAAG
TATTGAGTTTGATTCACTTTGTGACGGACCAAGAAGCGTATTGGATTATATTGAAATAGCCATATTATACCGCACTGTTA
TTATCGCGAATATAAAGCAGATGGATGATTTGCATAATGATATTGTCAGGCGTTTTATTGCGATGGTCGATGAATTTTAT
GATCACCATGTGGCTGTGGTTATCTCTGCTGAAGTTAAGATAATGGATCTGTATATTGGAGAGCAACTTAATTTTGAATT
CCAACGTTGTGTATCACGTTTGTCAGAGATGCAAAGCAAAACCTATTTAATGCAGGCTCACCATGTTGAACAAAAATAA

Upstream 100 bases:

>100_bases
TAATCAATTTGTGTAAATTGGGTACAAATTCAAATTTTGTCGACTTGGCTTTACTGTTATGATGCTCCAATAATGTTATA
AAAAAACTTGTGAGTGCTCT

Downstream 100 bases:

>100_bases
CGGCTTAAGGTTTTTTTGCCCCCTCGTTTTGCATAAATAAAGCGACGACAAAGAAAGACATTAATGTTATCAATAATTAT
TTCAATATTAAGGTGATTTC

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 371

Protein sequence:

>372_residues
MTPLNLYRADLQKKNFFEDPAQAIAIQQLQRLYMDLQTPPIENKKSSVLSRLINKLSTPTSKKKQFKGIYFYGGVGRGKT
YLVDLFFHSLPTKRKQRLHFHHFMLRVHKELSELQGQANPLVKIAQKFSFETDVLCFDEFYVDDITDAMILAGMLTALFE
QGIVLVATSNIHPDDLYKNGLQRARFLPVIDLVKVHCEVFNLDGGRDYRIGRLINSEIYHYPLDSSASLQIKNAFENLAD
GDKVYGQNIEINSRLIPSIANSIDTLSIEFDSLCDGPRSVLDYIEIAILYRTVIIANIKQMDDLHNDIVRRFIAMVDEFY
DHHVAVVISAEVKIMDLYIGEQLNFEFQRCVSRLSEMQSKTYLMQAHHVEQK

Sequences:

>Translated_372_residues
MTPLNLYRADLQKKNFFEDPAQAIAIQQLQRLYMDLQTPPIENKKSSVLSRLINKLSTPTSKKKQFKGIYFYGGVGRGKT
YLVDLFFHSLPTKRKQRLHFHHFMLRVHKELSELQGQANPLVKIAQKFSFETDVLCFDEFYVDDITDAMILAGMLTALFE
QGIVLVATSNIHPDDLYKNGLQRARFLPVIDLVKVHCEVFNLDGGRDYRIGRLINSEIYHYPLDSSASLQIKNAFENLAD
GDKVYGQNIEINSRLIPSIANSIDTLSIEFDSLCDGPRSVLDYIEIAILYRTVIIANIKQMDDLHNDIVRRFIAMVDEFY
DHHVAVVISAEVKIMDLYIGEQLNFEFQRCVSRLSEMQSKTYLMQAHHVEQK
>Mature_371_residues
TPLNLYRADLQKKNFFEDPAQAIAIQQLQRLYMDLQTPPIENKKSSVLSRLINKLSTPTSKKKQFKGIYFYGGVGRGKTY
LVDLFFHSLPTKRKQRLHFHHFMLRVHKELSELQGQANPLVKIAQKFSFETDVLCFDEFYVDDITDAMILAGMLTALFEQ
GIVLVATSNIHPDDLYKNGLQRARFLPVIDLVKVHCEVFNLDGGRDYRIGRLINSEIYHYPLDSSASLQIKNAFENLADG
DKVYGQNIEINSRLIPSIANSIDTLSIEFDSLCDGPRSVLDYIEIAILYRTVIIANIKQMDDLHNDIVRRFIAMVDEFYD
HHVAVVISAEVKIMDLYIGEQLNFEFQRCVSRLSEMQSKTYLMQAHHVEQK

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=423, Percent_Identity=32.8605200945626, Blast_Score=217, Evalue=1e-56,
Organism=Escherichia coli, GI1789627, Length=371, Percent_Identity=48.2479784366577, Blast_Score=360, Evalue=1e-100,
Organism=Caenorhabditis elegans, GI17505769, Length=416, Percent_Identity=32.6923076923077, Blast_Score=208, Evalue=4e-54,
Organism=Saccharomyces cerevisiae, GI6320783, Length=417, Percent_Identity=30.6954436450839, Blast_Score=162, Evalue=1e-40,
Organism=Drosophila melanogaster, GI20129913, Length=355, Percent_Identity=33.5211267605634, Blast_Score=179, Evalue=4e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42862; Mature: 42731

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLNLYRADLQKKNFFEDPAQAIAIQQLQRLYMDLQTPPIENKKSSVLSRLINKLSTPT
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
SKKKQFKGIYFYGGVGRGKTYLVDLFFHSLPTKRKQRLHFHHFMLRVHKELSELQGQANP
CHHHHCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
LVKIAQKFSFETDVLCFDEFYVDDITDAMILAGMLTALFEQGIVLVATSNIHPDDLYKNG
HHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHH
LQRARFLPVIDLVKVHCEVFNLDGGRDYRIGRLINSEIYHYPLDSSASLQIKNAFENLAD
HHHHHHHHHHHHHHHHHHEEECCCCCCEEHHHHHCCCCEECCCCCCCCEEHHHHHHHHCC
GDKVYGQNIEINSRLIPSIANSIDTLSIEFDSLCDGPRSVLDYIEIAILYRTVIIANIKQ
CCCCCCCCEEECCCHHHHHHCCHHEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
MDDLHNDIVRRFIAMVDEFYDHHVAVVISAEVKIMDLYIGEQLNFEFQRCVSRLSEMQSK
HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
TYLMQAHHVEQK
HHHHHHHHCCCC
>Mature Secondary Structure 
TPLNLYRADLQKKNFFEDPAQAIAIQQLQRLYMDLQTPPIENKKSSVLSRLINKLSTPT
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
SKKKQFKGIYFYGGVGRGKTYLVDLFFHSLPTKRKQRLHFHHFMLRVHKELSELQGQANP
CHHHHCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
LVKIAQKFSFETDVLCFDEFYVDDITDAMILAGMLTALFEQGIVLVATSNIHPDDLYKNG
HHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHH
LQRARFLPVIDLVKVHCEVFNLDGGRDYRIGRLINSEIYHYPLDSSASLQIKNAFENLAD
HHHHHHHHHHHHHHHHHHEEECCCCCCEEHHHHHCCCCEECCCCCCCCEEHHHHHHHHCC
GDKVYGQNIEINSRLIPSIANSIDTLSIEFDSLCDGPRSVLDYIEIAILYRTVIIANIKQ
CCCCCCCCEEECCCHHHHHHCCHHEEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
MDDLHNDIVRRFIAMVDEFYDHHVAVVISAEVKIMDLYIGEQLNFEFQRCVSRLSEMQSK
HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
TYLMQAHHVEQK
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]