The gene/protein map for NC_008709 is currently unavailable.
Definition Psychromonas ingrahamii 37, complete genome.
Accession NC_008709
Length 4,559,598

Click here to switch to the map view.

The map label for this gene is ynjD [H]

Identifier: 119946396

GI number: 119946396

Start: 3408626

End: 3409267

Strand: Direct

Name: ynjD [H]

Synonym: Ping_2770

Alternate gene names: 119946396

Gene position: 3408626-3409267 (Clockwise)

Preceding gene: 119946395

Following gene: 119946397

Centisome position: 74.76

GC content: 40.03

Gene sequence:

>642_bases
ATGTCCCTGACAGTAAAGAATCTGACTATTATTGATGCCAATAAAAAACCGCTATTTTCTCCCGTTTCATTTTCTATTCT
GCCCGGTGAAATATTAACCTTAATGGGCCCGAGTGGTTGCGGAAAATCGGCCTTATTAAGTGCGATAGCCGGTCATGCCT
CAGCCGATTTTAGCAACGAAGGTGAATATTATTTAGATAACTGCTTACTCAATAAGATAGCCGTCGAGAAACGTAACATT
GGCATTTTATTTCAAGATGATCTGTTATTCCCGCATCTGAATATTTGGGAAAACCTCGCTATTGCCCTGCCCAATAAATT
TAAAAAAGAGCAACGTAAAGCAGTTGCAATGAATACCTTGAATGAATTAAAGTTACAAACCCTAGCTGAAAAAGGCCCCT
CACAAATATCTGGGGGACAGAGAGCTAGAATCAGTATGATGAGAATGCTGCTCGCCGAGCCTGCAGCCGTTTTACTTGAT
GAGCCCTTTAGTAAATTAGATAAATCCTTACGCAATGACTTTAAAGTCTGGGTGTTTGAACAGATAAGAAAAAGAAAACT
GCCCGCTTTAATGGTGACCCATGATGAATCAGATCGACCTGATAATGGTCAGTGTTTACAATGGCCTTGGAATGAAAAAT
AG

Upstream 100 bases:

>100_bases
TTAGTCCCCTTTTTCTTTTATTTCCTCGCTATTTTTGCCAGTCAAAAAACCGGGATAATAATAAATCAAAGCACAATCAA
TAAAAGGAGTATTGCTCACC

Downstream 100 bases:

>100_bases
AAAATGAGCTTATAACAAGCCAATAAAGGAAAATACATGCTAGACCGCTTTACAACTAAAATTATCCGCTCCCCGCTTAA
CGGCATAGCGAAAAAGATAG

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MSLTVKNLTIIDANKKPLFSPVSFSILPGEILTLMGPSGCGKSALLSAIAGHASADFSNEGEYYLDNCLLNKIAVEKRNI
GILFQDDLLFPHLNIWENLAIALPNKFKKEQRKAVAMNTLNELKLQTLAEKGPSQISGGQRARISMMRMLLAEPAAVLLD
EPFSKLDKSLRNDFKVWVFEQIRKRKLPALMVTHDESDRPDNGQCLQWPWNEK

Sequences:

>Translated_213_residues
MSLTVKNLTIIDANKKPLFSPVSFSILPGEILTLMGPSGCGKSALLSAIAGHASADFSNEGEYYLDNCLLNKIAVEKRNI
GILFQDDLLFPHLNIWENLAIALPNKFKKEQRKAVAMNTLNELKLQTLAEKGPSQISGGQRARISMMRMLLAEPAAVLLD
EPFSKLDKSLRNDFKVWVFEQIRKRKLPALMVTHDESDRPDNGQCLQWPWNEK
>Mature_212_residues
SLTVKNLTIIDANKKPLFSPVSFSILPGEILTLMGPSGCGKSALLSAIAGHASADFSNEGEYYLDNCLLNKIAVEKRNIG
ILFQDDLLFPHLNIWENLAIALPNKFKKEQRKAVAMNTLNELKLQTLAEKGPSQISGGQRARISMMRMLLAEPAAVLLDE
PFSKLDKSLRNDFKVWVFEQIRKRKLPALMVTHDESDRPDNGQCLQWPWNEK

Specific function: Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system [H]

COG id: COG4136

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI46592964, Length=156, Percent_Identity=31.4102564102564, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI46592956, Length=156, Percent_Identity=31.4102564102564, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI46592978, Length=156, Percent_Identity=31.4102564102564, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI46592915, Length=156, Percent_Identity=31.4102564102564, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI46592971, Length=156, Percent_Identity=31.4102564102564, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI46592898, Length=156, Percent_Identity=31.4102564102564, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI11967971, Length=156, Percent_Identity=30.1282051282051, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI215820660, Length=142, Percent_Identity=29.5774647887324, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI20143975, Length=142, Percent_Identity=29.5774647887324, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI11967969, Length=191, Percent_Identity=25.6544502617801, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI27262624, Length=185, Percent_Identity=30.8108108108108, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI27262626, Length=185, Percent_Identity=30.8108108108108, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI153792144, Length=185, Percent_Identity=31.3513513513514, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI30795238, Length=176, Percent_Identity=27.8409090909091, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI27881501, Length=176, Percent_Identity=27.8409090909091, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI9961250, Length=168, Percent_Identity=30.3571428571429, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1788053, Length=212, Percent_Identity=41.9811320754717, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI87081791, Length=197, Percent_Identity=35.0253807106599, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1788761, Length=203, Percent_Identity=30.5418719211823, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI87082267, Length=186, Percent_Identity=32.7956989247312, Blast_Score=117, Evalue=5e-28,
Organism=Escherichia coli, GI1787370, Length=184, Percent_Identity=35.3260869565217, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1790467, Length=178, Percent_Identity=34.2696629213483, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI87081709, Length=178, Percent_Identity=32.5842696629214, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1787712, Length=178, Percent_Identity=34.8314606741573, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1786253, Length=177, Percent_Identity=32.7683615819209, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1786563, Length=185, Percent_Identity=32.4324324324324, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI1789593, Length=196, Percent_Identity=31.1224489795918, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1787029, Length=181, Percent_Identity=32.5966850828729, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1786872, Length=166, Percent_Identity=34.3373493975904, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1789672, Length=155, Percent_Identity=32.9032258064516, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787089, Length=203, Percent_Identity=29.5566502463054, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789032, Length=180, Percent_Identity=28.3333333333333, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1789873, Length=181, Percent_Identity=33.7016574585635, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1788225, Length=209, Percent_Identity=29.1866028708134, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1786703, Length=187, Percent_Identity=30.4812834224599, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87081834, Length=181, Percent_Identity=32.5966850828729, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1788506, Length=197, Percent_Identity=31.9796954314721, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1787105, Length=181, Percent_Identity=30.939226519337, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786698, Length=201, Percent_Identity=29.3532338308458, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787500, Length=184, Percent_Identity=32.6086956521739, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1789962, Length=200, Percent_Identity=29.5, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1787164, Length=181, Percent_Identity=28.7292817679558, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1790544, Length=171, Percent_Identity=29.8245614035088, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787758, Length=185, Percent_Identity=28.6486486486486, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789586, Length=188, Percent_Identity=27.1276595744681, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994997, Length=206, Percent_Identity=29.126213592233, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788450, Length=185, Percent_Identity=31.3513513513514, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786653, Length=163, Percent_Identity=28.8343558282209, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786398, Length=182, Percent_Identity=28.021978021978, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1789891, Length=191, Percent_Identity=29.8429319371728, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48994883, Length=189, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787143, Length=167, Percent_Identity=31.1377245508982, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786981, Length=190, Percent_Identity=31.5789473684211, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1790162, Length=189, Percent_Identity=31.7460317460317, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1786803, Length=182, Percent_Identity=28.5714285714286, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI145693107, Length=183, Percent_Identity=30.6010928961749, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI48994943, Length=185, Percent_Identity=27.027027027027, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1787112, Length=224, Percent_Identity=27.6785714285714, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=154, Percent_Identity=31.8181818181818, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=154, Percent_Identity=31.8181818181818, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=154, Percent_Identity=31.8181818181818, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71992290, Length=163, Percent_Identity=31.2883435582822, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=201, Percent_Identity=30.8457711442786, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=190, Percent_Identity=27.8947368421053, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=158, Percent_Identity=34.1772151898734, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=156, Percent_Identity=33.974358974359, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=162, Percent_Identity=29.6296296296296, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17511077, Length=166, Percent_Identity=29.5180722891566, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=188, Percent_Identity=27.1276595744681, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17569143, Length=147, Percent_Identity=29.2517006802721, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17565938, Length=159, Percent_Identity=30.8176100628931, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6319856, Length=180, Percent_Identity=30, Blast_Score=75, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6323217, Length=167, Percent_Identity=31.1377245508982, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24581191, Length=164, Percent_Identity=29.8780487804878, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24581189, Length=164, Percent_Identity=29.8780487804878, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24581193, Length=164, Percent_Identity=29.8780487804878, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24581195, Length=164, Percent_Identity=29.8780487804878, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI85816269, Length=161, Percent_Identity=32.2981366459627, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24580553, Length=161, Percent_Identity=32.2981366459627, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI85724864, Length=161, Percent_Identity=32.2981366459627, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24580555, Length=161, Percent_Identity=32.2981366459627, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI161076682, Length=170, Percent_Identity=30.5882352941176, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI161076684, Length=170, Percent_Identity=30.5882352941176, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581617, Length=170, Percent_Identity=30.5882352941176, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581615, Length=170, Percent_Identity=30.5882352941176, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581407, Length=179, Percent_Identity=30.1675977653631, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI45552199, Length=179, Percent_Identity=30.1675977653631, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI281363262, Length=159, Percent_Identity=30.188679245283, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24653245, Length=155, Percent_Identity=30.9677419354839, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24582014, Length=186, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24582012, Length=186, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI85726357, Length=155, Percent_Identity=32.258064516129, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24659289, Length=148, Percent_Identity=32.4324324324324, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24662800, Length=157, Percent_Identity=31.8471337579618, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17647959, Length=188, Percent_Identity=27.1276595744681, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24666092, Length=184, Percent_Identity=27.7173913043478, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI28574533, Length=148, Percent_Identity=31.7567567567568, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 23906; Mature: 23775

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MSLTVKNLTIIDANKKPLFSPVSFSILPGEILTLMGPSGCGKSALLSAIAGHASADFSNE
CCEEEEEEEEEECCCCCCCCCCEEEECCCHHHEEECCCCCCHHHHHHHHHCCCCCCCCCC
GEYYLDNCLLNKIAVEKRNIGILFQDDLLFPHLNIWENLAIALPNKFKKEQRKAVAMNTL
CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHEEECCHHHHHHHHHHHHHHHH
NELKLQTLAEKGPSQISGGQRARISMMRMLLAEPAAVLLDEPFSKLDKSLRNDFKVWVFE
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHCCHHHHHHH
QIRKRKLPALMVTHDESDRPDNGQCLQWPWNEK
HHHHCCCCEEEEECCCCCCCCCCCEECCCCCCC
>Mature Secondary Structure 
SLTVKNLTIIDANKKPLFSPVSFSILPGEILTLMGPSGCGKSALLSAIAGHASADFSNE
CEEEEEEEEEECCCCCCCCCCEEEECCCHHHEEECCCCCCHHHHHHHHHCCCCCCCCCC
GEYYLDNCLLNKIAVEKRNIGILFQDDLLFPHLNIWENLAIALPNKFKKEQRKAVAMNTL
CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHEEECCHHHHHHHHHHHHHHHH
NELKLQTLAEKGPSQISGGQRARISMMRMLLAEPAAVLLDEPFSKLDKSLRNDFKVWVFE
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHCCHHHHHHH
QIRKRKLPALMVTHDESDRPDNGQCLQWPWNEK
HHHHCCCCEEEEECCCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]