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The map label for this gene is ynjC [H]

Identifier: 119946395

GI number: 119946395

Start: 3406918

End: 3408660

Strand: Direct

Name: ynjC [H]

Synonym: Ping_2769

Alternate gene names: 119946395

Gene position: 3406918-3408660 (Clockwise)

Preceding gene: 119946394

Following gene: 119946396

Centisome position: 74.72

GC content: 40.91

Gene sequence:

>1743_bases
ATGAATGGCTCAATACAAAAAATTTCATTTCATTTTTTACTGGTATTGGCCATTTTGGTCTGCTTTACACCTTTATTACC
GGGTTTACTGGGATTACTTTTTTCTGCTTTTTCTTATATTCCTGCCCTAAATATGCAGAACTTCTCTTTAATGGGGTTCT
CTGAACTTTTATTATGGCCGGGTCTGCGCGAGTCGATTTTAATCACTATTTTTGTCAGCCTAAGCAGTACTTTTTTATCT
GCTCTGCTGGCTTTCTCTATTTTGCAATCATGCTGGAATAAAGCTTACTGGAAAAAATTAGAAAGCCTGCTCGCCCCGAT
ATTAGCATTACCCCATGTGGCTTTTGCTATTGGTTTTGCCTTTTTATTCACCCCAACTGGTTTTATTGCGCGACTTTTAA
ACACCCTTTTTAATGACTTTAGCATTACTCATTGGAGTTTAATTAATGATCCCTATGGTTTGGGGCTGATTTTAGGCCTC
ACAATCAAAGAAATTCCCTTTTTACTGTTTATGAGCATCCCGCTCCTTAAGCAGCTAAATGTTAACAGCACGCTGATGAC
AGCGCAGAGTTTAGGTTATTCCAAAGCACAAACCTGGCAGAAAATAATATTACCGCAATGGTTGCCTAAAATACGTTTTA
CGCTCTTTGCCGTAATGGCATACAGCTTGTCCGTAGTTGATGTCGCACTGGTAATAGGCCCTACCTCACCAGCCACTTTT
CCTGTTCTGATTTGGCAGTGGTTAAATGATCCTGACTTAGCCACATTACCCAAAGCATCGGCTGGCGCGTTATCACTTTT
ACTGATGTGTCTTGTTTTATTGTATTTAATCCGTTTTATAGAATGGTTAACAATAGTTAAATACCGCAGCTGGCAAACCA
GCGGGCGTCGCGCCCTACCGCTTGCCGGTAAAAGTGCACTCTTAGTCACCTACGTTATTTCATTAACTCCTCTGCCGCTT
CTAATCCTGTGGTCTTTTGCTCAGCGCTGGCCTTTTCCTGAACTTTTTCCAACTCACTGGTCATTACGCTTTTGGCAACA
GGAGTGGAGTTTTTTGTGGGGTATTATCGGCAATAGTATCTTCATTGCCTTAATCAGTGCGACCGTGGCACTTTTATTTG
CCATCATTATTCATGAACATAGTACTAGAGCGATGGCTGATAGGCAGCGATTTGTCGTACCAAGGTTAATCATTTCAATC
CCCATGCTGGCACCGCAATTGTCCATTTTATTTGGAATACAAGTTGCGACGCTTTTTATTGCCCATCAGTATTATTATTT
ATGGGTAATTTGGGCGCATATCTTCTTTGTTTTCCCCTATGTTTATCTGGTATTAGACGGACCATGGCGAAGTTATGACA
AGAGATTAGATATGATTGGGCTAAGTTTAGGAATGTCACCTTTTAAGGTTTGGTGGAAAATTAAAAGACCGGTATTATTA
CCTACCCTTTGTATTGCCTGGGCGGTTGGCATCAGTGTCAGTTTAGCGCAATATTTACCGACATTAATGCTTGCGGGGGG
ACGTATTTCCACCTTAACCACTGAAGCTGTGGCACTCGCTAGCGGTCAAGATCGACGCATCAGTGCTATTTATGCTCTAC
TGCAATCTTTAGTCCCCTTTTTCTTTTATTTCCTCGCTATTTTTGCCAGTCAAAAAACCGGGATAATAATAAATCAAAGC
ACAATCAATAAAAGGAGTATTGCTCACCATGTCCCTGACAGTAAAGAATCTGACTATTATTGA

Upstream 100 bases:

>100_bases
TTTATTTAAATCCATTAGTGAGCCGCACCCCAGTTGGCAAATCGCCCTGGAAACTGAATGGCAAAAAAGATATGGTCATT
AAAAATAGTTGCTGCTGGCG

Downstream 100 bases:

>100_bases
TGCCAATAAAAAACCGCTATTTTCTCCCGTTTCATTTTCTATTCTGCCCGGTGAAATATTAACCTTAATGGGCCCGAGTG
GTTGCGGAAAATCGGCCTTA

Product: ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 580; Mature: 580

Protein sequence:

>580_residues
MNGSIQKISFHFLLVLAILVCFTPLLPGLLGLLFSAFSYIPALNMQNFSLMGFSELLLWPGLRESILITIFVSLSSTFLS
ALLAFSILQSCWNKAYWKKLESLLAPILALPHVAFAIGFAFLFTPTGFIARLLNTLFNDFSITHWSLINDPYGLGLILGL
TIKEIPFLLFMSIPLLKQLNVNSTLMTAQSLGYSKAQTWQKIILPQWLPKIRFTLFAVMAYSLSVVDVALVIGPTSPATF
PVLIWQWLNDPDLATLPKASAGALSLLLMCLVLLYLIRFIEWLTIVKYRSWQTSGRRALPLAGKSALLVTYVISLTPLPL
LILWSFAQRWPFPELFPTHWSLRFWQQEWSFLWGIIGNSIFIALISATVALLFAIIIHEHSTRAMADRQRFVVPRLIISI
PMLAPQLSILFGIQVATLFIAHQYYYLWVIWAHIFFVFPYVYLVLDGPWRSYDKRLDMIGLSLGMSPFKVWWKIKRPVLL
PTLCIAWAVGISVSLAQYLPTLMLAGGRISTLTTEAVALASGQDRRISAIYALLQSLVPFFFYFLAIFASQKTGIIINQS
TINKRSIAHHVPDSKESDYY

Sequences:

>Translated_580_residues
MNGSIQKISFHFLLVLAILVCFTPLLPGLLGLLFSAFSYIPALNMQNFSLMGFSELLLWPGLRESILITIFVSLSSTFLS
ALLAFSILQSCWNKAYWKKLESLLAPILALPHVAFAIGFAFLFTPTGFIARLLNTLFNDFSITHWSLINDPYGLGLILGL
TIKEIPFLLFMSIPLLKQLNVNSTLMTAQSLGYSKAQTWQKIILPQWLPKIRFTLFAVMAYSLSVVDVALVIGPTSPATF
PVLIWQWLNDPDLATLPKASAGALSLLLMCLVLLYLIRFIEWLTIVKYRSWQTSGRRALPLAGKSALLVTYVISLTPLPL
LILWSFAQRWPFPELFPTHWSLRFWQQEWSFLWGIIGNSIFIALISATVALLFAIIIHEHSTRAMADRQRFVVPRLIISI
PMLAPQLSILFGIQVATLFIAHQYYYLWVIWAHIFFVFPYVYLVLDGPWRSYDKRLDMIGLSLGMSPFKVWWKIKRPVLL
PTLCIAWAVGISVSLAQYLPTLMLAGGRISTLTTEAVALASGQDRRISAIYALLQSLVPFFFYFLAIFASQKTGIIINQS
TINKRSIAHHVPDSKESDYY
>Mature_580_residues
MNGSIQKISFHFLLVLAILVCFTPLLPGLLGLLFSAFSYIPALNMQNFSLMGFSELLLWPGLRESILITIFVSLSSTFLS
ALLAFSILQSCWNKAYWKKLESLLAPILALPHVAFAIGFAFLFTPTGFIARLLNTLFNDFSITHWSLINDPYGLGLILGL
TIKEIPFLLFMSIPLLKQLNVNSTLMTAQSLGYSKAQTWQKIILPQWLPKIRFTLFAVMAYSLSVVDVALVIGPTSPATF
PVLIWQWLNDPDLATLPKASAGALSLLLMCLVLLYLIRFIEWLTIVKYRSWQTSGRRALPLAGKSALLVTYVISLTPLPL
LILWSFAQRWPFPELFPTHWSLRFWQQEWSFLWGIIGNSIFIALISATVALLFAIIIHEHSTRAMADRQRFVVPRLIISI
PMLAPQLSILFGIQVATLFIAHQYYYLWVIWAHIFFVFPYVYLVLDGPWRSYDKRLDMIGLSLGMSPFKVWWKIKRPVLL
PTLCIAWAVGISVSLAQYLPTLMLAGGRISTLTTEAVALASGQDRRISAIYALLQSLVPFFFYFLAIFASQKTGIIINQS
TINKRSIAHHVPDSKESDYY

Specific function: Probably part of the binding-protein-dependent transport system ynjCD. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4135

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI145693149, Length=253, Percent_Identity=31.2252964426877, Blast_Score=98, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 65587; Mature: 65587

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGSIQKISFHFLLVLAILVCFTPLLPGLLGLLFSAFSYIPALNMQNFSLMGFSELLLWP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCC
GLRESILITIFVSLSSTFLSALLAFSILQSCWNKAYWKKLESLLAPILALPHVAFAIGFA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLFTPTGFIARLLNTLFNDFSITHWSLINDPYGLGLILGLTIKEIPFLLFMSIPLLKQLN
HHHCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
VNSTLMTAQSLGYSKAQTWQKIILPQWLPKIRFTLFAVMAYSLSVVDVALVIGPTSPATF
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHH
PVLIWQWLNDPDLATLPKASAGALSLLLMCLVLLYLIRFIEWLTIVKYRSWQTSGRRALP
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECC
LAGKSALLVTYVISLTPLPLLILWSFAQRWPFPELFPTHWSLRFWQQEWSFLWGIIGNSI
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FIALISATVALLFAIIIHEHSTRAMADRQRFVVPRLIISIPMLAPQLSILFGIQVATLFI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHQYYYLWVIWAHIFFVFPYVYLVLDGPWRSYDKRLDMIGLSLGMSPFKVWWKIKRPVLL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHH
PTLCIAWAVGISVSLAQYLPTLMLAGGRISTLTTEAVALASGQDRRISAIYALLQSLVPF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
FFYFLAIFASQKTGIIINQSTINKRSIAHHVPDSKESDYY
HHHHHHHHHCCCCCEEEECCCCCHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNGSIQKISFHFLLVLAILVCFTPLLPGLLGLLFSAFSYIPALNMQNFSLMGFSELLLWP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCC
GLRESILITIFVSLSSTFLSALLAFSILQSCWNKAYWKKLESLLAPILALPHVAFAIGFA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLFTPTGFIARLLNTLFNDFSITHWSLINDPYGLGLILGLTIKEIPFLLFMSIPLLKQLN
HHHCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
VNSTLMTAQSLGYSKAQTWQKIILPQWLPKIRFTLFAVMAYSLSVVDVALVIGPTSPATF
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHH
PVLIWQWLNDPDLATLPKASAGALSLLLMCLVLLYLIRFIEWLTIVKYRSWQTSGRRALP
HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECC
LAGKSALLVTYVISLTPLPLLILWSFAQRWPFPELFPTHWSLRFWQQEWSFLWGIIGNSI
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FIALISATVALLFAIIIHEHSTRAMADRQRFVVPRLIISIPMLAPQLSILFGIQVATLFI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHQYYYLWVIWAHIFFVFPYVYLVLDGPWRSYDKRLDMIGLSLGMSPFKVWWKIKRPVLL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHH
PTLCIAWAVGISVSLAQYLPTLMLAGGRISTLTTEAVALASGQDRRISAIYALLQSLVPF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
FFYFLAIFASQKTGIIINQSTINKRSIAHHVPDSKESDYY
HHHHHHHHHCCCCCEEEECCCCCHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]