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The map label for this gene is traC [H]

Identifier: 119946128

GI number: 119946128

Start: 3031698

End: 3032609

Strand: Reverse

Name: traC [H]

Synonym: Ping_2480

Alternate gene names: 119946128

Gene position: 3032609-3031698 (Counterclockwise)

Preceding gene: 119946129

Following gene: 119946127

Centisome position: 66.51

GC content: 38.71

Gene sequence:

>912_bases
ATGAGCATTAATAGCCTGAAGATAAACGGAGAACTGCTTGATGCGGCTATATCCTTTGGTTTGTTACTTTTGGAAATCAT
TACTGATGGGGAAATTCATAGGGTACCGACAAAGAGTAAACCATGTAAAAAGAACGGCTGGTATGTTGCTTTTCTGAATA
GCCCAATCTGTGTTTTTGGTGATTGGTCAAGTGGTGAACGGGTGATTTTTAAACCAAGTGGTTACCAAGTGACATTAGCA
GATAGAGCAATAATCAAAGATCAAATTGCGGCTAAAAATTATCAAAAAAAGCAACAACAGCAGAAAGCAGCTCAACAAGC
CAAGCAACGTTATAACAAAGCTGAGCCAGTGAAAAATCACGCTTATCTTGAGCATAAATCAGTAAAAACGATGCCTTTTT
TGAAAACTGAAGGCAATTTACTGCTGGTTCCATTAATCGATCTATCAGAAAAAAAACCAAAAATTTGCAACTTACAAACG
ATTGATCAACATGGCTCCAAGCGTTTTATGAAAGAAGGTCGCGTAAAAGGTTTGTGCTGGTCCATTGGTTTGCTTGAATG
GTGCGGTGAAGGGAAGTTATACCTATGTGAAGGAATGGTGACAGCAATAAGCATTCAGCAACATACAAAATCACCGACAG
TTGCAGCGCTAACTTCCGGTAACCTCATGCCTGTAGCAATTATCTTGAAAAAGCGATACCCAAATGTACAACTGGTTATC
GCAGGAGATGATGATTGGCTAACTGAGCAGAAAAGGGGCATTAATACCGGAAAAATAAAAGCAACAGAAGTTGCTGTTAG
CCTTGATGCTGCGATCTCATTTCCACCATTTAGCAATGATCAAAAAAAGATGGGCTATACAGATTGGAATGATTACTTTA
AATATTGTGATGAGGTGGTCATCAATGAATAA

Upstream 100 bases:

>100_bases
TTCATTATATTAAACCCTATGGCTTGATAGGTGAATATATTAACAAACTTATCGGCTATAAATGCATTGAAAATCAAAAG
GTTAATAAAGGGTGGCTGTT

Downstream 100 bases:

>100_bases
CATTACGGACCAAGTGAATATTGTTGCTTTGTCAGAGCATAAACCAAATTCGGCAAATACGAATATTCAGCCATTTAAAT
GGTATCAAGGTTCAGAGGGT

Product: hypothetical protein

Products: NA

Alternate protein names: Replication primase [H]

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MSINSLKINGELLDAAISFGLLLLEIITDGEIHRVPTKSKPCKKNGWYVAFLNSPICVFGDWSSGERVIFKPSGYQVTLA
DRAIIKDQIAAKNYQKKQQQQKAAQQAKQRYNKAEPVKNHAYLEHKSVKTMPFLKTEGNLLLVPLIDLSEKKPKICNLQT
IDQHGSKRFMKEGRVKGLCWSIGLLEWCGEGKLYLCEGMVTAISIQQHTKSPTVAALTSGNLMPVAIILKKRYPNVQLVI
AGDDDWLTEQKRGINTGKIKATEVAVSLDAAISFPPFSNDQKKMGYTDWNDYFKYCDEVVINE

Sequences:

>Translated_303_residues
MSINSLKINGELLDAAISFGLLLLEIITDGEIHRVPTKSKPCKKNGWYVAFLNSPICVFGDWSSGERVIFKPSGYQVTLA
DRAIIKDQIAAKNYQKKQQQQKAAQQAKQRYNKAEPVKNHAYLEHKSVKTMPFLKTEGNLLLVPLIDLSEKKPKICNLQT
IDQHGSKRFMKEGRVKGLCWSIGLLEWCGEGKLYLCEGMVTAISIQQHTKSPTVAALTSGNLMPVAIILKKRYPNVQLVI
AGDDDWLTEQKRGINTGKIKATEVAVSLDAAISFPPFSNDQKKMGYTDWNDYFKYCDEVVINE
>Mature_302_residues
SINSLKINGELLDAAISFGLLLLEIITDGEIHRVPTKSKPCKKNGWYVAFLNSPICVFGDWSSGERVIFKPSGYQVTLAD
RAIIKDQIAAKNYQKKQQQQKAAQQAKQRYNKAEPVKNHAYLEHKSVKTMPFLKTEGNLLLVPLIDLSEKKPKICNLQTI
DQHGSKRFMKEGRVKGLCWSIGLLEWCGEGKLYLCEGMVTAISIQQHTKSPTVAALTSGNLMPVAIILKKRYPNVQLVIA
GDDDWLTEQKRGINTGKIKATEVAVSLDAAISFPPFSNDQKKMGYTDWNDYFKYCDEVVINE

Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]

COG id: COG4643

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013610
- InterPro:   IPR006171 [H]

Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 33996; Mature: 33865

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINSLKINGELLDAAISFGLLLLEIITDGEIHRVPTKSKPCKKNGWYVAFLNSPICVFG
CCCCEEEECHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCCEEEEE
DWSSGERVIFKPSGYQVTLADRAIIKDQIAAKNYQKKQQQQKAAQQAKQRYNKAEPVKNH
CCCCCCEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
AYLEHKSVKTMPFLKTEGNLLLVPLIDLSEKKPKICNLQTIDQHGSKRFMKEGRVKGLCW
EEEECCCCCCCCEEECCCCEEEEEEECCCCCCCCEECEEEHHHCHHHHHHHCCCCCEEEE
SIGLLEWCGEGKLYLCEGMVTAISIQQHTKSPTVAALTSGNLMPVAIILKKRYPNVQLVI
EHHHHHHCCCCCEEEECCEEEEEEEHHHCCCCCEEEEECCCCEEEEEEEECCCCCEEEEE
AGDDDWLTEQKRGINTGKIKATEVAVSLDAAISFPPFSNDQKKMGYTDWNDYFKYCDEVV
ECCCCHHHHHHCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
INE
CCC
>Mature Secondary Structure 
SINSLKINGELLDAAISFGLLLLEIITDGEIHRVPTKSKPCKKNGWYVAFLNSPICVFG
CCCEEEECHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEECCCEEEEE
DWSSGERVIFKPSGYQVTLADRAIIKDQIAAKNYQKKQQQQKAAQQAKQRYNKAEPVKNH
CCCCCCEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
AYLEHKSVKTMPFLKTEGNLLLVPLIDLSEKKPKICNLQTIDQHGSKRFMKEGRVKGLCW
EEEECCCCCCCCEEECCCCEEEEEEECCCCCCCCEECEEEHHHCHHHHHHHCCCCCEEEE
SIGLLEWCGEGKLYLCEGMVTAISIQQHTKSPTVAALTSGNLMPVAIILKKRYPNVQLVI
EHHHHHHCCCCCEEEECCEEEEEEEHHHCCCCCEEEEECCCCEEEEEEEECCCCCEEEEE
AGDDDWLTEQKRGINTGKIKATEVAVSLDAAISFPPFSNDQKKMGYTDWNDYFKYCDEVV
ECCCCHHHHHHCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
INE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]