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The map label for this gene is yafD [C]

Identifier: 119946106

GI number: 119946106

Start: 3003112

End: 3003951

Strand: Direct

Name: yafD [C]

Synonym: Ping_2456

Alternate gene names: 119946106

Gene position: 3003112-3003951 (Clockwise)

Preceding gene: 119946105

Following gene: 119946110

Centisome position: 65.86

GC content: 42.26

Gene sequence:

>840_bases
TTGTATAAAGCACCCACAAATTGCTGTATAAATGCACACGAAAGGTCAACAGACCCTAAGGGATCACTTATTTTTACACC
ACGTATTTTCCCGCAAAGACTTGCCCATCAGCAGCACAACCTGTCGGACACGTTTTCCCTTATTGTATGGAATATCCATA
AAGAGAACCTGCACCCGCAGTTTATAGAGAACTTTGAAACCCTGATCCAAGAGTACCCCTGTGACTTCCTGCTTTTCCAG
GAGGTCAAATTCCCAAAAAAGATTGCCTCTGTATTGGATGCTTTTTCCTATGCGATGGCCAGCAATATAGAGACTTCTCA
ACATATCTACGGCGTTTTAACTGCGACCAAAATTGCCTTTACCACCATCAGTTCACACCTTACCCATCAGCGGGAAGTCG
GTCTTATTACCCATAAAAGTATGCTTATCACGCATCACAAACTGCCCGATGGCCGCACTCTGCATATAGTCAATATTCAT
GGCATCAATTTTGTCTCCATAAAAGGATTTATAAAAGAGCTGGAGAAGATTAAAGCAGTACTGCACAGCTGTAGCGGCCC
GATAATAGTTGCAGGGGATTTTAATAATTGGACAAAAAAACGGATAATGGCACTGGAGACTTTTCAGCACGCACTCGGAT
TGGAAAAAGCAGACATTCAGGAAGGCCATCATGTCAAACATATATTTGCAAAACCACTCGATCATATCTTCTACAGAGAA
TTGAAATTACTCCAAGCTGAAGCTATCGATACAAAGAAAATCTCAGACCACAACCCTATCTATGCGACTTTCAGCGTAAT
TCGTGATTCAGGAAAAGTGGCTGAAGCTGCTGAAGTGTGA

Upstream 100 bases:

>100_bases
CAGGACGCTTTTAGATGAACCCGAAAGGCAGCATTTGTAGATACGATCGACTATGTTATCGCCTACTTATGTAGAATAAC
GACAGGTTGCAGGCTCTGCC

Downstream 100 bases:

>100_bases
GGTTAAGTGTAGATTATGCAAAATATTTAGGCGGCAGGCTGCCTTAGCTGTTTCTTTAGCCCTTTTTACAGAGCATATTC
GCAGGCTTATAAACTATTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MYKAPTNCCINAHERSTDPKGSLIFTPRIFPQRLAHQQHNLSDTFSLIVWNIHKENLHPQFIENFETLIQEYPCDFLLFQ
EVKFPKKIASVLDAFSYAMASNIETSQHIYGVLTATKIAFTTISSHLTHQREVGLITHKSMLITHHKLPDGRTLHIVNIH
GINFVSIKGFIKELEKIKAVLHSCSGPIIVAGDFNNWTKKRIMALETFQHALGLEKADIQEGHHVKHIFAKPLDHIFYRE
LKLLQAEAIDTKKISDHNPIYATFSVIRDSGKVAEAAEV

Sequences:

>Translated_279_residues
MYKAPTNCCINAHERSTDPKGSLIFTPRIFPQRLAHQQHNLSDTFSLIVWNIHKENLHPQFIENFETLIQEYPCDFLLFQ
EVKFPKKIASVLDAFSYAMASNIETSQHIYGVLTATKIAFTTISSHLTHQREVGLITHKSMLITHHKLPDGRTLHIVNIH
GINFVSIKGFIKELEKIKAVLHSCSGPIIVAGDFNNWTKKRIMALETFQHALGLEKADIQEGHHVKHIFAKPLDHIFYRE
LKLLQAEAIDTKKISDHNPIYATFSVIRDSGKVAEAAEV
>Mature_279_residues
MYKAPTNCCINAHERSTDPKGSLIFTPRIFPQRLAHQQHNLSDTFSLIVWNIHKENLHPQFIENFETLIQEYPCDFLLFQ
EVKFPKKIASVLDAFSYAMASNIETSQHIYGVLTATKIAFTTISSHLTHQREVGLITHKSMLITHHKLPDGRTLHIVNIH
GINFVSIKGFIKELEKIKAVLHSCSGPIIVAGDFNNWTKKRIMALETFQHALGLEKADIQEGHHVKHIFAKPLDHIFYRE
LKLLQAEAIDTKKISDHNPIYATFSVIRDSGKVAEAAEV

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=229, Percent_Identity=31.4410480349345, Blast_Score=111, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 31749; Mature: 31749

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKAPTNCCINAHERSTDPKGSLIFTPRIFPQRLAHQQHNLSDTFSLIVWNIHKENLHPQ
CCCCCCCCEEECCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHH
FIENFETLIQEYPCDFLLFQEVKFPKKIASVLDAFSYAMASNIETSQHIYGVLTATKIAF
HHHHHHHHHHHCCCCEEEHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
TTISSHLTHQREVGLITHKSMLITHHKLPDGRTLHIVNIHGINFVSIKGFIKELEKIKAV
HHHHHHHHHHHHCCEEEEHHEEEEEECCCCCCEEEEEEECCCCEEHHHHHHHHHHHHHHH
LHSCSGPIIVAGDFNNWTKKRIMALETFQHALGLEKADIQEGHHVKHIFAKPLDHIFYRE
HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHH
LKLLQAEAIDTKKISDHNPIYATFSVIRDSGKVAEAAEV
HHHHHHHHCCCCCCCCCCCEEEEEEHHHCCCCCHHHCCC
>Mature Secondary Structure
MYKAPTNCCINAHERSTDPKGSLIFTPRIFPQRLAHQQHNLSDTFSLIVWNIHKENLHPQ
CCCCCCCCEEECCCCCCCCCCCEEECCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHH
FIENFETLIQEYPCDFLLFQEVKFPKKIASVLDAFSYAMASNIETSQHIYGVLTATKIAF
HHHHHHHHHHHCCCCEEEHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
TTISSHLTHQREVGLITHKSMLITHHKLPDGRTLHIVNIHGINFVSIKGFIKELEKIKAV
HHHHHHHHHHHHCCEEEEHHEEEEEECCCCCCEEEEEEECCCCEEHHHHHHHHHHHHHHH
LHSCSGPIIVAGDFNNWTKKRIMALETFQHALGLEKADIQEGHHVKHIFAKPLDHIFYRE
HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHH
LKLLQAEAIDTKKISDHNPIYATFSVIRDSGKVAEAAEV
HHHHHHHHCCCCCCCCCCCEEEEEEHHHCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA