| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is dinG [H]
Identifier: 119945838
GI number: 119945838
Start: 2653196
End: 2655256
Strand: Direct
Name: dinG [H]
Synonym: Ping_2178
Alternate gene names: 119945838
Gene position: 2653196-2655256 (Clockwise)
Preceding gene: 119945820
Following gene: 119945839
Centisome position: 58.19
GC content: 41.1
Gene sequence:
>2061_bases ATGCTTCCAGATTCCCTAAAAATAAAGATCCGGGCAGGTTATACGCTTATTACTCAGGCTTTACCTCATTTTTCAACGCG TAAAGCACAGAATTATCTGGTCGCTGAAATCGCAAAAGTACTCGCGGGTGAATATGATAAATCACGACGCATACTGGTTG CAGAGGCCGGTACCGGGATTGGCAAATCATTAGCTTATATACTAGCAGCGCTACCCGTCGCGCAACATGCAAAGAAAAAA CTCATTATTTCGACTGCGACAATCACTTTGCAGGAGCAATTAATGGTTAAGGATCTGCCTTTTTTTTTGCGCCATAGTGA ATTTAAATTTACTTTTACCTTAGCTAAAGGGCGTCAGCGTTATTGCTGTGAACATAAACTGTTCAGCACCCAACAAGGCA CGGAACAACAGGCTTTATTTACCGAAAAACCACAAGCAGGTGATCAGGTATTATTAACACGCCTACATGAAGCGTATCTT GCGGGTAAATGGTTAGGGGATCGCGATAGTTGGCCAACACCCATTCCAAATCGCGTCTGGCAACAGATCGTTTCCGATAA ATTCAGCTGTAAACGCGCCTTAGCGAATCATCGCCAGTGCCCTTTTCATCGTGCTCGCGATGCTATCAATAAAGCAGATG TTATTGTTGTCAACCACGCATTACTGTTGGCCGATCTCGAGTTGGGAGGGGGAATCATTTTACCCGAACCTGATAACTGT TTTTATGTCCTAGACGAAGCCCATCACCTGCCCAAAATATCCAGAGATTTTTCCAGTGCGCGTGCCAGTATTAAGGGCAG TCAAGATTGGCTTAAAAAAATCAACCAGCTAAGTCAACATATTAATAAGACCATTAAACGCCATACGACTATTACACCGG GTATTAATATGCTCGAAAGCGCACAAGAAATAATAAAGGAGCTGAAAACGGTGGAGTTATTTTTTAACAATAACCCCAGC TACTTTAATGAATCAGATAAATACCGATTTGCATTGGGGGAGTTACCCGAAACATTACATCACCCCGCCTGTCATTTAAA AGAAGAAAGTAAAAAATGTTTATCGGCTTTAAATAAACTTTCAAATATTATCAGTGAAGAAATCAAAGACGGTAATGTTA AAACAAAGGATGTTGAACCTTTAATGATTGAACTGGGATTTTTCCAGCAGCGTATCGAAAACATGCAGACACTGTGGGTT ATGCTGACCAGAGAAAAGACAACCAAGCAGGCACCTATCGCTGCGTGGGCTGAAAGAGAGAAAGCAGAAATTTATTTAAA TGCTTCACCGATAGAGGTCGGGGGAATATTAGAGAAGATATTTTGGTCACAGGCTGCAGGGATTATTTTATGCTCCGCCA CATTGACCTCACTGAATAATTTTGAATACTTTAAGCGCCAAAGCGGATTAAAAAGCAATGATGGCACGCAATACTTGCGC TTAAAGTCCCCCTTTAATTACCCCGCCATCCCTTTAATTATTGCAGATATGGAAAGCGATCCGACTCAAGCGGGTTTTGA TGATGAACTGATTGAAAAAATAGAAAATTATTTACGCGACAACGAGGGTAATTTAGTTTTATTTGCATCCTACTGGCAAA TGAATTTAGTGGCCGATAAGCTCAATAAGAAATACCAAGAGGCTTTATTAATACAAGGCGTCTTGTCGCGCAGCAAACTT ATCAAAACACATAAGCAGCGCTGTGATCAAGGCAAAACAAGTATTATCTTCGGTACCGGCGGATTATCCGAGGGACTGGA TTTGCCCGGACATTATTTGACCAACTTGATTATTACCAAATTACCTTTCGCCGTACCAAACTCTCCCGTTGAAGAAGCGC ATTCTGAATGGATAAAAGCCCAAGGTGGCAACCCTTTTTTACAGCTTTCTATTCCAGAGACAAGTAAAAAACTGATCCAG TCATGTGGACGATTGATTAGAAAAGAAAATGACACAGGGCGAATTATTATATTGGATAAGAGAGTAAAAACGAAACGTTA CGGAAAAGGTTTACTGGATGCGCTTCCCCCTTTTGCGATTCAATTTGAGCATAAACATTAA
Upstream 100 bases:
>100_bases TAAGATCTATGATTAAATCATGCCATAAAAGTATGATAGAAATTCTGTTTAGTGCAGATATTTTTGTTAAAATGCTTTTT TTACTTTAACCGCGAAATAT
Downstream 100 bases:
>100_bases TGACTGAACTTTTTTTTGACCCCGGCACTTGGGCGTTACTTGTTTTTGTAGGCTTGATCGCAGGTTTTATTGATGCGGTC GTTGGCGGAGGAGGCATGCT
Product: ATP-dependent DNA helicase DinG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 686; Mature: 686
Protein sequence:
>686_residues MLPDSLKIKIRAGYTLITQALPHFSTRKAQNYLVAEIAKVLAGEYDKSRRILVAEAGTGIGKSLAYILAALPVAQHAKKK LIISTATITLQEQLMVKDLPFFLRHSEFKFTFTLAKGRQRYCCEHKLFSTQQGTEQQALFTEKPQAGDQVLLTRLHEAYL AGKWLGDRDSWPTPIPNRVWQQIVSDKFSCKRALANHRQCPFHRARDAINKADVIVVNHALLLADLELGGGIILPEPDNC FYVLDEAHHLPKISRDFSSARASIKGSQDWLKKINQLSQHINKTIKRHTTITPGINMLESAQEIIKELKTVELFFNNNPS YFNESDKYRFALGELPETLHHPACHLKEESKKCLSALNKLSNIISEEIKDGNVKTKDVEPLMIELGFFQQRIENMQTLWV MLTREKTTKQAPIAAWAEREKAEIYLNASPIEVGGILEKIFWSQAAGIILCSATLTSLNNFEYFKRQSGLKSNDGTQYLR LKSPFNYPAIPLIIADMESDPTQAGFDDELIEKIENYLRDNEGNLVLFASYWQMNLVADKLNKKYQEALLIQGVLSRSKL IKTHKQRCDQGKTSIIFGTGGLSEGLDLPGHYLTNLIITKLPFAVPNSPVEEAHSEWIKAQGGNPFLQLSIPETSKKLIQ SCGRLIRKENDTGRIIILDKRVKTKRYGKGLLDALPPFAIQFEHKH
Sequences:
>Translated_686_residues MLPDSLKIKIRAGYTLITQALPHFSTRKAQNYLVAEIAKVLAGEYDKSRRILVAEAGTGIGKSLAYILAALPVAQHAKKK LIISTATITLQEQLMVKDLPFFLRHSEFKFTFTLAKGRQRYCCEHKLFSTQQGTEQQALFTEKPQAGDQVLLTRLHEAYL AGKWLGDRDSWPTPIPNRVWQQIVSDKFSCKRALANHRQCPFHRARDAINKADVIVVNHALLLADLELGGGIILPEPDNC FYVLDEAHHLPKISRDFSSARASIKGSQDWLKKINQLSQHINKTIKRHTTITPGINMLESAQEIIKELKTVELFFNNNPS YFNESDKYRFALGELPETLHHPACHLKEESKKCLSALNKLSNIISEEIKDGNVKTKDVEPLMIELGFFQQRIENMQTLWV MLTREKTTKQAPIAAWAEREKAEIYLNASPIEVGGILEKIFWSQAAGIILCSATLTSLNNFEYFKRQSGLKSNDGTQYLR LKSPFNYPAIPLIIADMESDPTQAGFDDELIEKIENYLRDNEGNLVLFASYWQMNLVADKLNKKYQEALLIQGVLSRSKL IKTHKQRCDQGKTSIIFGTGGLSEGLDLPGHYLTNLIITKLPFAVPNSPVEEAHSEWIKAQGGNPFLQLSIPETSKKLIQ SCGRLIRKENDTGRIIILDKRVKTKRYGKGLLDALPPFAIQFEHKH >Mature_686_residues MLPDSLKIKIRAGYTLITQALPHFSTRKAQNYLVAEIAKVLAGEYDKSRRILVAEAGTGIGKSLAYILAALPVAQHAKKK LIISTATITLQEQLMVKDLPFFLRHSEFKFTFTLAKGRQRYCCEHKLFSTQQGTEQQALFTEKPQAGDQVLLTRLHEAYL AGKWLGDRDSWPTPIPNRVWQQIVSDKFSCKRALANHRQCPFHRARDAINKADVIVVNHALLLADLELGGGIILPEPDNC FYVLDEAHHLPKISRDFSSARASIKGSQDWLKKINQLSQHINKTIKRHTTITPGINMLESAQEIIKELKTVELFFNNNPS YFNESDKYRFALGELPETLHHPACHLKEESKKCLSALNKLSNIISEEIKDGNVKTKDVEPLMIELGFFQQRIENMQTLWV MLTREKTTKQAPIAAWAEREKAEIYLNASPIEVGGILEKIFWSQAAGIILCSATLTSLNNFEYFKRQSGLKSNDGTQYLR LKSPFNYPAIPLIIADMESDPTQAGFDDELIEKIENYLRDNEGNLVLFASYWQMNLVADKLNKKYQEALLIQGVLSRSKL IKTHKQRCDQGKTSIIFGTGGLSEGLDLPGHYLTNLIITKLPFAVPNSPVEEAHSEWIKAQGGNPFLQLSIPETSKKLIQ SCGRLIRKENDTGRIIILDKRVKTKRYGKGLLDALPPFAIQFEHKH
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787018, Length=706, Percent_Identity=33.28611898017, Blast_Score=329, Evalue=3e-91, Organism=Escherichia coli, GI1788110, Length=678, Percent_Identity=26.8436578171091, Blast_Score=196, Evalue=4e-51,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 [H]
Pfam domain/function: PF06733 DEAD_2 [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 77595; Mature: 77595
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPDSLKIKIRAGYTLITQALPHFSTRKAQNYLVAEIAKVLAGEYDKSRRILVAEAGTGI CCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC GKSLAYILAALPVAQHAKKKLIISTATITLQEQLMVKDLPFFLRHSEFKFTFTLAKGRQR HHHHHHHHHHHHHHHHHCCEEEEEEEEEHHHHHHHHHHCCHHHCCCCEEEEEEECCCCHH YCCEHKLFSTQQGTEQQALFTEKPQAGDQVLLTRLHEAYLAGKWLGDRDSWPTPIPNRVW HHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH QQIVSDKFSCKRALANHRQCPFHRARDAINKADVIVVNHALLLADLELGGGIILPEPDNC HHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEEEEEEEEECCCEEEEECCCCC FYVLDEAHHLPKISRDFSSARASIKGSQDWLKKINQLSQHINKTIKRHTTITPGINMLES EEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH AQEIIKELKTVELFFNNNPSYFNESDKYRFALGELPETLHHPACHLKEESKKCLSALNKL HHHHHHHHHEEEEEECCCCCCCCCCCCEEEEHHHCCHHHCCCHHHHHHHHHHHHHHHHHH SNIISEEIKDGNVKTKDVEPLMIELGFFQQRIENMQTLWVMLTREKTTKQAPIAAWAERE HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHCCC KAEIYLNASPIEVGGILEKIFWSQAAGIILCSATLTSLNNFEYFKRQSGLKSNDGTQYLR CEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEHHHHHCCCHHHHHHHCCCCCCCCCEEEE LKSPFNYPAIPLIIADMESDPTQAGFDDELIEKIENYLRDNEGNLVLFASYWQMNLVADK ECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHH LNKKYQEALLIQGVLSRSKLIKTHKQRCDQGKTSIIFGTGGLSEGLDLPGHYLTNLIITK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH LPFAVPNSPVEEAHSEWIKAQGGNPFLQLSIPETSKKLIQSCGRLIRKENDTGRIIILDK CCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEEC RVKTKRYGKGLLDALPPFAIQFEHKH CHHHHHHCCCHHHHCCCCEEEECCCC >Mature Secondary Structure MLPDSLKIKIRAGYTLITQALPHFSTRKAQNYLVAEIAKVLAGEYDKSRRILVAEAGTGI CCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC GKSLAYILAALPVAQHAKKKLIISTATITLQEQLMVKDLPFFLRHSEFKFTFTLAKGRQR HHHHHHHHHHHHHHHHHCCEEEEEEEEEHHHHHHHHHHCCHHHCCCCEEEEEEECCCCHH YCCEHKLFSTQQGTEQQALFTEKPQAGDQVLLTRLHEAYLAGKWLGDRDSWPTPIPNRVW HHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH QQIVSDKFSCKRALANHRQCPFHRARDAINKADVIVVNHALLLADLELGGGIILPEPDNC HHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEEEEEEEEECCCEEEEECCCCC FYVLDEAHHLPKISRDFSSARASIKGSQDWLKKINQLSQHINKTIKRHTTITPGINMLES EEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH AQEIIKELKTVELFFNNNPSYFNESDKYRFALGELPETLHHPACHLKEESKKCLSALNKL HHHHHHHHHEEEEEECCCCCCCCCCCCEEEEHHHCCHHHCCCHHHHHHHHHHHHHHHHHH SNIISEEIKDGNVKTKDVEPLMIELGFFQQRIENMQTLWVMLTREKTTKQAPIAAWAERE HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHCCC KAEIYLNASPIEVGGILEKIFWSQAAGIILCSATLTSLNNFEYFKRQSGLKSNDGTQYLR CEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEHHHHHCCCHHHHHHHCCCCCCCCCEEEE LKSPFNYPAIPLIIADMESDPTQAGFDDELIEKIENYLRDNEGNLVLFASYWQMNLVADK ECCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHH LNKKYQEALLIQGVLSRSKLIKTHKQRCDQGKTSIIFGTGGLSEGLDLPGHYLTNLIITK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH LPFAVPNSPVEEAHSEWIKAQGGNPFLQLSIPETSKKLIQSCGRLIRKENDTGRIIILDK CCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEEC RVKTKRYGKGLLDALPPFAIQFEHKH CHHHHHHCCCHHHHCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8396546; 8385320 [H]