| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is yvrD [H]
Identifier: 119945771
GI number: 119945771
Start: 2563046
End: 2563855
Strand: Direct
Name: yvrD [H]
Synonym: Ping_2106
Alternate gene names: 119945771
Gene position: 2563046-2563855 (Clockwise)
Preceding gene: 119945767
Following gene: 119945773
Centisome position: 56.21
GC content: 42.84
Gene sequence:
>810_bases ATGAAAAAAACAATTTTAATTACTGGTGCAACCGACGGTATAGGTTTGGCAACAGCAAAGATGTTAGCTTCAAATGGTCA TAGTCTATTGGTACATGGACGTAACCCTGAAAAGTTAAATAAAGTGGTAAAAATGCTGACTGAACTGCCTAATGCCGGAA CAGTTAAAAGTTATCTGGCAGACTTGTCACAAATGTCCGATGTAAAGACCTTAGCGAATAAGATAAAAGCACAATACGAT AACCTTGATGTGCTGATTAACAACGCCGGTGTTTTTAAAGTAGATAACCCCATAACCAGGGACGGACTTGATCTGCGCTT TACTGTTAATACCATTGCGCCTTATCTTTTATTGCAGGAGCTGCTGCCATTGCTTGCCACTTCCGCGCGAGTAATTAACC TTTCTTCAGCAGCCCAGGCACCCGTGAATATGCAAGCATTGCTGGGTAAAGTGCCGCTTTCCGATATGGAAGCTTATGCG CAAAGCAAACTTGCCATTACCATGTGGAGCCGAATAATGGCTCAAACACTTAAAGATAAGGGGCCCGTTATTATTACAGT AAACCCGGGCTCAATGCTCGGCAGTAAAATGGTACAAGAAGGGTTTGGTGTGGCAGGTGGTGACTTAAAAATAGGCGCTA AAATCTTAACGCGGCTGGCACTGGATAAGGAATTCGCCGGTTCTTCTGGTCAGTATTTCGATAATGACGCCGGCCGATTT TGTTCTCCACACCCTGACGGATTGAATTTACAAAAATCAGCTGAGTTGGTTACGACCATAGAAAGTATTTTATCCGGCAT TAAACATTAA
Upstream 100 bases:
>100_bases TTCGCAATCATTGATCACTTAATTAATTCTTTTGGTATTAATAAAAAATCGCTCGTTGAATGTGCCGGAAGCAAACGTTC AATATAATAAGGAATTTTCC
Downstream 100 bases:
>100_bases AGGGTATTTATTAAGCGAACGATAATTACCCGTAGGCGCGCACCAAGCATTATCAGCGGTGCATGAAATACATCCTACCG GTAACATAATCCGTAGGGTG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 269; Mature: 269
Protein sequence:
>269_residues MKKTILITGATDGIGLATAKMLASNGHSLLVHGRNPEKLNKVVKMLTELPNAGTVKSYLADLSQMSDVKTLANKIKAQYD NLDVLINNAGVFKVDNPITRDGLDLRFTVNTIAPYLLLQELLPLLATSARVINLSSAAQAPVNMQALLGKVPLSDMEAYA QSKLAITMWSRIMAQTLKDKGPVIITVNPGSMLGSKMVQEGFGVAGGDLKIGAKILTRLALDKEFAGSSGQYFDNDAGRF CSPHPDGLNLQKSAELVTTIESILSGIKH
Sequences:
>Translated_269_residues MKKTILITGATDGIGLATAKMLASNGHSLLVHGRNPEKLNKVVKMLTELPNAGTVKSYLADLSQMSDVKTLANKIKAQYD NLDVLINNAGVFKVDNPITRDGLDLRFTVNTIAPYLLLQELLPLLATSARVINLSSAAQAPVNMQALLGKVPLSDMEAYA QSKLAITMWSRIMAQTLKDKGPVIITVNPGSMLGSKMVQEGFGVAGGDLKIGAKILTRLALDKEFAGSSGQYFDNDAGRF CSPHPDGLNLQKSAELVTTIESILSGIKH >Mature_269_residues MKKTILITGATDGIGLATAKMLASNGHSLLVHGRNPEKLNKVVKMLTELPNAGTVKSYLADLSQMSDVKTLANKIKAQYD NLDVLINNAGVFKVDNPITRDGLDLRFTVNTIAPYLLLQELLPLLATSARVINLSSAAQAPVNMQALLGKVPLSDMEAYA QSKLAITMWSRIMAQTLKDKGPVIITVNPGSMLGSKMVQEGFGVAGGDLKIGAKILTRLALDKEFAGSSGQYFDNDAGRF CSPHPDGLNLQKSAELVTTIESILSGIKH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7706523, Length=283, Percent_Identity=28.6219081272085, Blast_Score=101, Evalue=6e-22, Organism=Homo sapiens, GI225579078, Length=258, Percent_Identity=30.6201550387597, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI193804850, Length=198, Percent_Identity=35.8585858585859, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI186928839, Length=287, Percent_Identity=29.616724738676, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI166795268, Length=194, Percent_Identity=33.5051546391753, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI19923931, Length=200, Percent_Identity=30.5, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI10190746, Length=262, Percent_Identity=29.3893129770992, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI146231950, Length=250, Percent_Identity=28, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1786701, Length=196, Percent_Identity=29.0816326530612, Blast_Score=67, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17558006, Length=251, Percent_Identity=29.8804780876494, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17532791, Length=257, Percent_Identity=27.6264591439689, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17505416, Length=215, Percent_Identity=28.3720930232558, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17544670, Length=203, Percent_Identity=30.0492610837438, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI32565532, Length=217, Percent_Identity=29.4930875576037, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI193204405, Length=215, Percent_Identity=31.1627906976744, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI71992402, Length=203, Percent_Identity=31.5270935960591, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17532805, Length=137, Percent_Identity=38.6861313868613, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17563726, Length=194, Percent_Identity=30.4123711340206, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17560332, Length=201, Percent_Identity=29.8507462686567, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI115533172, Length=116, Percent_Identity=36.2068965517241, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI115533174, Length=116, Percent_Identity=36.2068965517241, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17565030, Length=209, Percent_Identity=29.6650717703349, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193207620, Length=275, Percent_Identity=28.7272727272727, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17562904, Length=213, Percent_Identity=29.5774647887324, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17560150, Length=197, Percent_Identity=27.4111675126904, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17551412, Length=215, Percent_Identity=28.8372093023256, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17538486, Length=211, Percent_Identity=28.436018957346, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17559104, Length=241, Percent_Identity=27.3858921161826, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI72001364, Length=225, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI72000259, Length=194, Percent_Identity=28.8659793814433, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71994604, Length=193, Percent_Identity=26.9430051813472, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17559962, Length=231, Percent_Identity=30.3030303030303, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17562906, Length=217, Percent_Identity=29.0322580645161, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324820, Length=225, Percent_Identity=27.1111111111111, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6323882, Length=199, Percent_Identity=31.1557788944724, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI20129347, Length=273, Percent_Identity=31.1355311355311, Blast_Score=101, Evalue=5e-22, Organism=Drosophila melanogaster, GI22024069, Length=261, Percent_Identity=30.2681992337165, Blast_Score=91, Evalue=9e-19, Organism=Drosophila melanogaster, GI45554248, Length=250, Percent_Identity=29.6, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI24640117, Length=250, Percent_Identity=29.6, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI161076371, Length=258, Percent_Identity=29.0697674418605, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI19921754, Length=194, Percent_Identity=30.9278350515464, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24586328, Length=251, Percent_Identity=29.0836653386454, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI28573296, Length=258, Percent_Identity=26.3565891472868, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI21357041, Length=195, Percent_Identity=31.2820512820513, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI24647931, Length=276, Percent_Identity=25.7246376811594, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24644339, Length=191, Percent_Identity=32.4607329842932, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI45553409, Length=253, Percent_Identity=30.4347826086957, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24647948, Length=253, Percent_Identity=30.4347826086957, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24647946, Length=253, Percent_Identity=30.4347826086957, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI23397609, Length=192, Percent_Identity=31.7708333333333, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI28571526, Length=194, Percent_Identity=29.3814432989691, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24656154, Length=272, Percent_Identity=27.2058823529412, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI19922628, Length=272, Percent_Identity=27.2058823529412, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24643142, Length=193, Percent_Identity=31.0880829015544, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=27.5303643724696, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28745; Mature: 28745
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTILITGATDGIGLATAKMLASNGHSLLVHGRNPEKLNKVVKMLTELPNAGTVKSYLA CCCEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHH DLSQMSDVKTLANKIKAQYDNLDVLINNAGVFKVDNPITRDGLDLRFTVNTIAPYLLLQE HHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCCCCEEEEEHHHHHHHHHHHH LLPLLATSARVINLSSAAQAPVNMQALLGKVPLSDMEAYAQSKLAITMWSRIMAQTLKDK HHHHHHCCHHEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC GPVIITVNPGSMLGSKMVQEGFGVAGGDLKIGAKILTRLALDKEFAGSSGQYFDNDAGRF CCEEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC CSPHPDGLNLQKSAELVTTIESILSGIKH CCCCCCCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKKTILITGATDGIGLATAKMLASNGHSLLVHGRNPEKLNKVVKMLTELPNAGTVKSYLA CCCEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHH DLSQMSDVKTLANKIKAQYDNLDVLINNAGVFKVDNPITRDGLDLRFTVNTIAPYLLLQE HHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCCCCEEEEEHHHHHHHHHHHH LLPLLATSARVINLSSAAQAPVNMQALLGKVPLSDMEAYAQSKLAITMWSRIMAQTLKDK HHHHHHCCHHEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC GPVIITVNPGSMLGSKMVQEGFGVAGGDLKIGAKILTRLALDKEFAGSSGQYFDNDAGRF CCEEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC CSPHPDGLNLQKSAELVTTIESILSGIKH CCCCCCCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9639930; 9384377 [H]