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The map label for this gene is ycbZ [H]

Identifier: 119945668

GI number: 119945668

Start: 2410433

End: 2412121

Strand: Direct

Name: ycbZ [H]

Synonym: Ping_1981

Alternate gene names: 119945668

Gene position: 2410433-2412121 (Clockwise)

Preceding gene: 119945667

Following gene: 119945669

Centisome position: 52.87

GC content: 37.36

Gene sequence:

>1689_bases
TTGCCTATTCATAATTCAAATACACCCCCTGAAGCGCAGCCGGACAACGGTTATGCTAATCCATTAAAGCCTCTTGCTGC
GGAACAATGTTCACCCGATTTCAGCGTCCGATTATCAAATAAAAATAACAATAAAGATAATTGGTTGTCTATGTATCCGG
TTGTGTCTCAAATCATTGCTCATTTTGAAAAATTACCACAGCCTTTACTGGTATTTAACTCAATCTATTGGCAAGCGGCT
ACCAGTGTTATCTTTGAATGTAGTCCTCCCAATTATCCACTTCTGGCGCTCCTTAATTACAATCAGGAAACGTTATTCGG
ACGGCTCACTCAGAATACAGAAAAAACGATTGATTTTGAGCAGGGTGAAATTTTCAATTACAATCACGGCTGTTTAGTTT
TAGATATCAGTCCTCTTTTAATTAATCCACCCTTATGGTTTTTAATAAAATCATTTTTAATCACACGCACCCTGCCGGCA
AGATCAGCAGTAAACGGTGAAAAATTTAAGGAAAAACCCCCGGAACAACCTTTGGATAGGATAGACACTAAAATAATACT
GGTGGCCAATCGTTACCAACTTGATGAATTATCTCAAATTGATCCAGAATATAATCAAGTCGGTTCATTGTTTACAGAAT
TGTCGGCGCAAATAGATGCAACGGATGAAAATATCAACTGTCTGCAAAATTTCTGTCTGCAGCTGATAGCAAAAAATAAC
TTAATCCCGTTATCTGCAGATGCAATGTCTTTATTGTTCCATCACCTTGCAAGTTTGTGCGAACACCAAAAAAGACTGCT
TTTTTCGCCTGAAGCCATTGAAAAAATGCTTCGCTATGCGCAGTTGTTCAGCCCTAATGCCGATCTGCTTGAGGCCGCTG
AGTTACAAAAAGTCATTGACTTACAATCTCAGGCTCAATCATTAGCACAAAATTTTAGTGACCAGGCTCTGCTTGAAAAG
CAGTTGAAAATACAGTTAAAAGGCAAAGAAACGGGGCAAATAAATGGTTTGTCTGTTGTTGAGTTAATGGGTTACCCAAC
TGAATTTGGTGAAATATTTAGAATATCCGCAAGTGATATGATAGGTGATGGTGAGATTATTGATGTTGAAAGAAAAGTTG
AAATGGCGGGTAATATACATGCTAAAAGTACTTTAATAGTACAAGGTTATTTAAATCATCTTTTCACTCATGTCCATAAT
TTCCCACTTTCTTGCAATGTTGTTTTTGAACAATCCTATCAAGAAAGTGATGGCGACAGTGCTGCATTGGCCATTTTATT
AGCAGTAACATCATGTTACGCACAGACCCCCGCACACCAAAATTTATTTGTGACCGGGGCATTAGATCAACATGGGAACG
TCTTAGCGATAGGCGGGATTAATCAAAAAATACAATCGGTTACACGTTTATTTTCGATCGGCTTATTAAATGATCCGATT
ACCATCTTAATACCCGCAGCTAATTACATTAACTTAACCTTAGATGCACAAAGTATGCAATTAGTGAGGGACAATAAAAT
CAATATATTTGGGATTAATCACTGCCGGGAAGCCTTCCCCTTTGCATTAAACGCCTCATTTATTGAGATTGTTTCATTGA
TAAACAAACGTGTTGAATTATTACAAAAAGAAGTACATGAAGAGTCTGAGCATAGTTTATTAAGCCGTGTTTTTTCAAAA
TTTCGTTAA

Upstream 100 bases:

>100_bases
GTTCAAATTATAAACTGATGAAACAGGCAATGAGTATTTAACTTACTCATTGCAACATTGACATTCGCTACTTATAATAG
GCAGATTTAGAGTTGCTAAT

Downstream 100 bases:

>100_bases
TTAATTTTGCGTATGCTTTATGATTGATAACAACTATTTATGAATAAAGTTGATTGTTATTTATCTGTCATATAAAGTGT
GCTCAAAATTTTCCAGGGTA

Product: ATP-dependent protease La

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 562; Mature: 561

Protein sequence:

>562_residues
MPIHNSNTPPEAQPDNGYANPLKPLAAEQCSPDFSVRLSNKNNNKDNWLSMYPVVSQIIAHFEKLPQPLLVFNSIYWQAA
TSVIFECSPPNYPLLALLNYNQETLFGRLTQNTEKTIDFEQGEIFNYNHGCLVLDISPLLINPPLWFLIKSFLITRTLPA
RSAVNGEKFKEKPPEQPLDRIDTKIILVANRYQLDELSQIDPEYNQVGSLFTELSAQIDATDENINCLQNFCLQLIAKNN
LIPLSADAMSLLFHHLASLCEHQKRLLFSPEAIEKMLRYAQLFSPNADLLEAAELQKVIDLQSQAQSLAQNFSDQALLEK
QLKIQLKGKETGQINGLSVVELMGYPTEFGEIFRISASDMIGDGEIIDVERKVEMAGNIHAKSTLIVQGYLNHLFTHVHN
FPLSCNVVFEQSYQESDGDSAALAILLAVTSCYAQTPAHQNLFVTGALDQHGNVLAIGGINQKIQSVTRLFSIGLLNDPI
TILIPAANYINLTLDAQSMQLVRDNKINIFGINHCREAFPFALNASFIEIVSLINKRVELLQKEVHEESEHSLLSRVFSK
FR

Sequences:

>Translated_562_residues
MPIHNSNTPPEAQPDNGYANPLKPLAAEQCSPDFSVRLSNKNNNKDNWLSMYPVVSQIIAHFEKLPQPLLVFNSIYWQAA
TSVIFECSPPNYPLLALLNYNQETLFGRLTQNTEKTIDFEQGEIFNYNHGCLVLDISPLLINPPLWFLIKSFLITRTLPA
RSAVNGEKFKEKPPEQPLDRIDTKIILVANRYQLDELSQIDPEYNQVGSLFTELSAQIDATDENINCLQNFCLQLIAKNN
LIPLSADAMSLLFHHLASLCEHQKRLLFSPEAIEKMLRYAQLFSPNADLLEAAELQKVIDLQSQAQSLAQNFSDQALLEK
QLKIQLKGKETGQINGLSVVELMGYPTEFGEIFRISASDMIGDGEIIDVERKVEMAGNIHAKSTLIVQGYLNHLFTHVHN
FPLSCNVVFEQSYQESDGDSAALAILLAVTSCYAQTPAHQNLFVTGALDQHGNVLAIGGINQKIQSVTRLFSIGLLNDPI
TILIPAANYINLTLDAQSMQLVRDNKINIFGINHCREAFPFALNASFIEIVSLINKRVELLQKEVHEESEHSLLSRVFSK
FR
>Mature_561_residues
PIHNSNTPPEAQPDNGYANPLKPLAAEQCSPDFSVRLSNKNNNKDNWLSMYPVVSQIIAHFEKLPQPLLVFNSIYWQAAT
SVIFECSPPNYPLLALLNYNQETLFGRLTQNTEKTIDFEQGEIFNYNHGCLVLDISPLLINPPLWFLIKSFLITRTLPAR
SAVNGEKFKEKPPEQPLDRIDTKIILVANRYQLDELSQIDPEYNQVGSLFTELSAQIDATDENINCLQNFCLQLIAKNNL
IPLSADAMSLLFHHLASLCEHQKRLLFSPEAIEKMLRYAQLFSPNADLLEAAELQKVIDLQSQAQSLAQNFSDQALLEKQ
LKIQLKGKETGQINGLSVVELMGYPTEFGEIFRISASDMIGDGEIIDVERKVEMAGNIHAKSTLIVQGYLNHLFTHVHNF
PLSCNVVFEQSYQESDGDSAALAILLAVTSCYAQTPAHQNLFVTGALDQHGNVLAIGGINQKIQSVTRLFSIGLLNDPIT
ILIPAANYINLTLDAQSMQLVRDNKINIFGINHCREAFPFALNASFIEIVSLINKRVELLQKEVHEESEHSLLSRVFSKF
R

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=437, Percent_Identity=31.350114416476, Blast_Score=207, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.-

Molecular weight: Translated: 63045; Mature: 62914

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIHNSNTPPEAQPDNGYANPLKPLAAEQCSPDFSVRLSNKNNNKDNWLSMYPVVSQIIA
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
HFEKLPQPLLVFNSIYWQAATSVIFECSPPNYPLLALLNYNQETLFGRLTQNTEKTIDFE
HHHHCCCHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEECCHHHHHHHHHCCCCCCEECC
QGEIFNYNHGCLVLDISPLLINPPLWFLIKSFLITRTLPARSAVNGEKFKEKPPEQPLDR
CCCEEECCCCEEEEECCCCEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCHHH
IDTKIILVANRYQLDELSQIDPEYNQVGSLFTELSAQIDATDENINCLQNFCLQLIAKNN
HCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
LIPLSADAMSLLFHHLASLCEHQKRLLFSPEAIEKMLRYAQLFSPNADLLEAAELQKVID
CEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LQSQAQSLAQNFSDQALLEKQLKIQLKGKETGQINGLSVVELMGYPTEFGEIFRISASDM
HHHHHHHHHHCCCHHHHHHHHHEEEECCCCCCCCCCEEEEEHHCCCCCCCCEEEEECCCC
IGDGEIIDVERKVEMAGNIHAKSTLIVQGYLNHLFTHVHNFPLSCNVVFEQSYQESDGDS
CCCCCEEEHHHHHHHHCCEECCCEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCH
AALAILLAVTSCYAQTPAHQNLFVTGALDQHGNVLAIGGINQKIQSVTRLFSIGLLNDPI
HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHCCCCCE
TILIPAANYINLTLDAQSMQLVRDNKINIFGINHCREAFPFALNASFIEIVSLINKRVEL
EEEEECCCEEEEEEEHHHHHHHHCCCEEEEECHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LQKEVHEESEHSLLSRVFSKFR
HHHHHHCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PIHNSNTPPEAQPDNGYANPLKPLAAEQCSPDFSVRLSNKNNNKDNWLSMYPVVSQIIA
CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
HFEKLPQPLLVFNSIYWQAATSVIFECSPPNYPLLALLNYNQETLFGRLTQNTEKTIDFE
HHHHCCCHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEECCHHHHHHHHHCCCCCCEECC
QGEIFNYNHGCLVLDISPLLINPPLWFLIKSFLITRTLPARSAVNGEKFKEKPPEQPLDR
CCCEEECCCCEEEEECCCCEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCHHH
IDTKIILVANRYQLDELSQIDPEYNQVGSLFTELSAQIDATDENINCLQNFCLQLIAKNN
HCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
LIPLSADAMSLLFHHLASLCEHQKRLLFSPEAIEKMLRYAQLFSPNADLLEAAELQKVID
CEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LQSQAQSLAQNFSDQALLEKQLKIQLKGKETGQINGLSVVELMGYPTEFGEIFRISASDM
HHHHHHHHHHCCCHHHHHHHHHEEEECCCCCCCCCCEEEEEHHCCCCCCCCEEEEECCCC
IGDGEIIDVERKVEMAGNIHAKSTLIVQGYLNHLFTHVHNFPLSCNVVFEQSYQESDGDS
CCCCCEEEHHHHHHHHCCEECCCEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCH
AALAILLAVTSCYAQTPAHQNLFVTGALDQHGNVLAIGGINQKIQSVTRLFSIGLLNDPI
HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHCCCCCE
TILIPAANYINLTLDAQSMQLVRDNKINIFGINHCREAFPFALNASFIEIVSLINKRVEL
EEEEECCCEEEEEEEHHHHHHHHCCCEEEEECHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LQKEVHEESEHSLLSRVFSKFR
HHHHHHCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]