| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is dedA [H]
Identifier: 119945578
GI number: 119945578
Start: 2288325
End: 2290433
Strand: Direct
Name: dedA [H]
Synonym: Ping_1883
Alternate gene names: 119945578
Gene position: 2288325-2290433 (Clockwise)
Preceding gene: 119945576
Following gene: 119945579
Centisome position: 50.19
GC content: 40.97
Gene sequence:
>2109_bases ATGAATGACCTAATTAATAATATACTGCCATCCATTGAGCACTTCAAAGTTACAGGATATTGGATTGCTTTCTTTGCTGC TCTGCTTGAGACCACCCTCGCTGTTGGCCTGCTTTTCCCCGGATCATTAATTATTCTTTTCCTTGGTGCGCTTTCTGCCC GTGGTTATCTTGATTTGGGTGATCTAATCTGGTTTTCTGTTTTTGGCGCCATTATTGGCGACAATCTCAATTATTATCTT GGCAAAAAATATGGCACAAAATGGCTGAAAGAGGGTTTCTGGCTGCTCAAGGAAAACCATATTATAAAAGCACAACATTT TATGAACGCACAAGGTGCAAAAAGTGTTTTTTTGAGCCGCTTTATTCCAGGTGCCAAAGAGCTTGTTCCTTTTATTGCGG GGACTATAAGAATGAACAAAAGAACATTTATGTTTTGGAATGTTCTTGGTGGAATAGGCTGGGGATGCCAATGGGTTTTG GCTGGTTACCTTTTTGCACAATCCCTTAATCTCGCTGAATTGTGGCTCTCTCGGGCGGGACTGTTTTTTGCTTTTATGCT GATCTTTGCGGGCAGCCTCTACCTTTTTAAATACTTTATAATTAAGAAAGGCAAAAAATTTTGGCTAATTATCAACTCCC TTTTGCAATCGTTCAAAGAAGCCCTGTCAAACAATGAGCAGGTGATTTTATGGCGACAGAAACATCCGCGCAGCCTCGTT TTTATTCAAGCTAGGCTGGATAGAACCGCATTTTCTGGGTTAATGCTATCCCTATTAACCCTGGTATTTTTGTATGTTAT TGCGCTGCTTGGTGGGATTGTGGAAGACCTCATAACATCTGATCCTATTGTTGCCGCAGACATTCGTATTGCAAATCTTT TCTTTGTGTTTCGCGATGAGACACTAACGGCGGTTTTTAGCTGGATAACCTTGCTGGGTAAAAGTCAGATAATCCTGGTC TTTATTACTGTCTTGGTTGTACTGCTTTGGTTATGGCGGAAAAAAGATTATATTTTTCCTCTTTTTATCGCCGTTATCGG CAGTGAGACATTTACTTTTTTGGGGAAACTGGCTTTCCATCGACCTCGACCGGAAATGGCGGTTTATGTGGAAAATTCTT TTTCTTTCCCCAGTGGACATGCAACGATAGCCGTCGCATTCTACGGGTTTTTGGGCTATCTTCTGATCCGTTTTACCCAA AGTTGGAATAAAAAGGTAAATATATTCTTTACCACAATAATCTTGATTATAGCGATTGGCTTTAGCCGGATATACCTTGG GGTTCATTATATAAGTGATGTCTGGAGCGGTTATCTGGTTGGCGCAATGTGGCTGATTATTGCCATCTCTTTTTCCGAAT GGTTTAAACATAAAAACAGAAAGCAGGCCTCAGTTCCTCCCAATAAGCTCGTCCGCACGATTTCATTCGGGCTTATTTTA ACCGCCATCTTATTCTATCTCGGATTTGCAGTAAGCTATCACCCTCCACTGGGAGAGATGCCACTAAATAACACCGCTAT TGTATCAAAAAGTACAGACATCTTCGTCAATGAACAGCTGAAATACACTGAGACACTGATCGGTGAAAAACAGGAGCCTA TAAACTTTATTTTCCTTGCCGAAAGTGATGATCAGCTGCTTAAGGCACTGCAGCAGGGGGGATGGATTTTAACCGATAAG GCCAATATCCGCTCATTTGGCAAAGTAGTTAATGCCTTGATATCGAAAACCACCTATCTATCCGCACCCCTTTCACCTTC TTTTTGGCATGCTAAAACACAGGATTTTAGTCTCTCTAAAATGGCCAGTGAACAATCCTTCGGTCATTCACAGCATATAA AGATATGGCGTACAAACTCATTATTGAAAACCGGAAATCATATTTACGTTGGCATGAGCAATACCCTTGATGGCCTTAGA TGGGGTCTTATTCCTAAAATTTCGCCGGATTTAGACACTGCACGAGAGCGCTTATATCTGGACCTTAACAGGAAAGACAT AATAAAGAATCAGCTGAAAATACAACTTGTAGCGCCACTAATAGGGAAAAATTTTATGGGCGATCAATTTTTTACCGACG GCAAGGCTTATATCATCGACTTTCAATAA
Upstream 100 bases:
>100_bases CTTATTGAAAATAAGTGGACTATTTTTAGTTTGAGCTTGAAGCTGATCTATTTAATAACTTCAAATATCTTACAGATCTT GAACGACGAGATTAAACATA
Downstream 100 bases:
>100_bases AAATTTTAACAGTGTGGTTAGCAATAATTGCAATACTTTTTTAGGTGGAAATATCAGCAGGATTTAGCAATGCTATTGCA GGAGATAACGGTCCGTAGGA
Product: phosphoesterase, PA-phosphatase related
Products: NA
Alternate protein names: Protein DSG-1 [H]
Number of amino acids: Translated: 702; Mature: 702
Protein sequence:
>702_residues MNDLINNILPSIEHFKVTGYWIAFFAALLETTLAVGLLFPGSLIILFLGALSARGYLDLGDLIWFSVFGAIIGDNLNYYL GKKYGTKWLKEGFWLLKENHIIKAQHFMNAQGAKSVFLSRFIPGAKELVPFIAGTIRMNKRTFMFWNVLGGIGWGCQWVL AGYLFAQSLNLAELWLSRAGLFFAFMLIFAGSLYLFKYFIIKKGKKFWLIINSLLQSFKEALSNNEQVILWRQKHPRSLV FIQARLDRTAFSGLMLSLLTLVFLYVIALLGGIVEDLITSDPIVAADIRIANLFFVFRDETLTAVFSWITLLGKSQIILV FITVLVVLLWLWRKKDYIFPLFIAVIGSETFTFLGKLAFHRPRPEMAVYVENSFSFPSGHATIAVAFYGFLGYLLIRFTQ SWNKKVNIFFTTIILIIAIGFSRIYLGVHYISDVWSGYLVGAMWLIIAISFSEWFKHKNRKQASVPPNKLVRTISFGLIL TAILFYLGFAVSYHPPLGEMPLNNTAIVSKSTDIFVNEQLKYTETLIGEKQEPINFIFLAESDDQLLKALQQGGWILTDK ANIRSFGKVVNALISKTTYLSAPLSPSFWHAKTQDFSLSKMASEQSFGHSQHIKIWRTNSLLKTGNHIYVGMSNTLDGLR WGLIPKISPDLDTARERLYLDLNRKDIIKNQLKIQLVAPLIGKNFMGDQFFTDGKAYIIDFQ
Sequences:
>Translated_702_residues MNDLINNILPSIEHFKVTGYWIAFFAALLETTLAVGLLFPGSLIILFLGALSARGYLDLGDLIWFSVFGAIIGDNLNYYL GKKYGTKWLKEGFWLLKENHIIKAQHFMNAQGAKSVFLSRFIPGAKELVPFIAGTIRMNKRTFMFWNVLGGIGWGCQWVL AGYLFAQSLNLAELWLSRAGLFFAFMLIFAGSLYLFKYFIIKKGKKFWLIINSLLQSFKEALSNNEQVILWRQKHPRSLV FIQARLDRTAFSGLMLSLLTLVFLYVIALLGGIVEDLITSDPIVAADIRIANLFFVFRDETLTAVFSWITLLGKSQIILV FITVLVVLLWLWRKKDYIFPLFIAVIGSETFTFLGKLAFHRPRPEMAVYVENSFSFPSGHATIAVAFYGFLGYLLIRFTQ SWNKKVNIFFTTIILIIAIGFSRIYLGVHYISDVWSGYLVGAMWLIIAISFSEWFKHKNRKQASVPPNKLVRTISFGLIL TAILFYLGFAVSYHPPLGEMPLNNTAIVSKSTDIFVNEQLKYTETLIGEKQEPINFIFLAESDDQLLKALQQGGWILTDK ANIRSFGKVVNALISKTTYLSAPLSPSFWHAKTQDFSLSKMASEQSFGHSQHIKIWRTNSLLKTGNHIYVGMSNTLDGLR WGLIPKISPDLDTARERLYLDLNRKDIIKNQLKIQLVAPLIGKNFMGDQFFTDGKAYIIDFQ >Mature_702_residues MNDLINNILPSIEHFKVTGYWIAFFAALLETTLAVGLLFPGSLIILFLGALSARGYLDLGDLIWFSVFGAIIGDNLNYYL GKKYGTKWLKEGFWLLKENHIIKAQHFMNAQGAKSVFLSRFIPGAKELVPFIAGTIRMNKRTFMFWNVLGGIGWGCQWVL AGYLFAQSLNLAELWLSRAGLFFAFMLIFAGSLYLFKYFIIKKGKKFWLIINSLLQSFKEALSNNEQVILWRQKHPRSLV FIQARLDRTAFSGLMLSLLTLVFLYVIALLGGIVEDLITSDPIVAADIRIANLFFVFRDETLTAVFSWITLLGKSQIILV FITVLVVLLWLWRKKDYIFPLFIAVIGSETFTFLGKLAFHRPRPEMAVYVENSFSFPSGHATIAVAFYGFLGYLLIRFTQ SWNKKVNIFFTTIILIIAIGFSRIYLGVHYISDVWSGYLVGAMWLIIAISFSEWFKHKNRKQASVPPNKLVRTISFGLIL TAILFYLGFAVSYHPPLGEMPLNNTAIVSKSTDIFVNEQLKYTETLIGEKQEPINFIFLAESDDQLLKALQQGGWILTDK ANIRSFGKVVNALISKTTYLSAPLSPSFWHAKTQDFSLSKMASEQSFGHSQHIKIWRTNSLLKTGNHIYVGMSNTLDGLR WGLIPKISPDLDTARERLYLDLNRKDIIKNQLKIQLVAPLIGKNFMGDQFFTDGKAYIIDFQ
Specific function: Unknown
COG id: COG0671
COG function: function code I; Membrane-associated phospholipid phosphatase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dedA family [H]
Homologues:
Organism=Escherichia coli, GI1788656, Length=150, Percent_Identity=30.6666666666667, Blast_Score=81, Evalue=3e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015414 [H]
Pfam domain/function: PF09335 SNARE_assoc [H]
EC number: NA
Molecular weight: Translated: 79820; Mature: 79820
Theoretical pI: Translated: 10.14; Mature: 10.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDLINNILPSIEHFKVTGYWIAFFAALLETTLAVGLLFPGSLIILFLGALSARGYLDLG CHHHHHHHCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHH DLIWFSVFGAIIGDNLNYYLGKKYGTKWLKEGFWLLKENHIIKAQHFMNAQGAKSVFLSR HHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCCEEEECCCEEEHHHHCCCCCHHHHHHHH FIPGAKELVPFIAGTIRMNKRTFMFWNVLGGIGWGCQWVLAGYLFAQSLNLAELWLSRAG HCCCHHHHHHHHHHHEEECCEEEEEHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH LFFAFMLIFAGSLYLFKYFIIKKGKKFWLIINSLLQSFKEALSNNEQVILWRQKHPRSLV HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEE FIQARLDRTAFSGLMLSLLTLVFLYVIALLGGIVEDLITSDPIVAADIRIANLFFVFRDE EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEECH TLTAVFSWITLLGKSQIILVFITVLVVLLWLWRKKDYIFPLFIAVIGSETFTFLGKLAFH HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHC RPRPEMAVYVENSFSFPSGHATIAVAFYGFLGYLLIRFTQSWNKKVNIFFTTIILIIAIG CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH FSRIYLGVHYISDVWSGYLVGAMWLIIAISFSEWFKHKNRKQASVPPNKLVRTISFGLIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH TAILFYLGFAVSYHPPLGEMPLNNTAIVSKSTDIFVNEQLKYTETLIGEKQEPINFIFLA HHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEECCCHHHHHHHHCCCCCCCEEEEEE ESDDQLLKALQQGGWILTDKANIRSFGKVVNALISKTTYLSAPLSPSFWHAKTQDFSLSK CCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCHHH MASEQSFGHSQHIKIWRTNSLLKTGNHIYVGMSNTLDGLRWGLIPKISPDLDTARERLYL HHHHHCCCCCCCEEEEECCCHHHCCCEEEEEECCCCCCHHHCCCCCCCCCHHHHHHHEEE DLNRKDIIKNQLKIQLVAPLIGKNFMGDQFFTDGKAYIIDFQ ECCHHHHHHHHHHEEEEHHHHCCCCCCCCEEECCCEEEEEEC >Mature Secondary Structure MNDLINNILPSIEHFKVTGYWIAFFAALLETTLAVGLLFPGSLIILFLGALSARGYLDLG CHHHHHHHCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHH DLIWFSVFGAIIGDNLNYYLGKKYGTKWLKEGFWLLKENHIIKAQHFMNAQGAKSVFLSR HHHHHHHHHHHHCCCCCEEECCHHHHHHHHCCCEEEECCCEEEHHHHCCCCCHHHHHHHH FIPGAKELVPFIAGTIRMNKRTFMFWNVLGGIGWGCQWVLAGYLFAQSLNLAELWLSRAG HCCCHHHHHHHHHHHEEECCEEEEEHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH LFFAFMLIFAGSLYLFKYFIIKKGKKFWLIINSLLQSFKEALSNNEQVILWRQKHPRSLV HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEE FIQARLDRTAFSGLMLSLLTLVFLYVIALLGGIVEDLITSDPIVAADIRIANLFFVFRDE EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEECH TLTAVFSWITLLGKSQIILVFITVLVVLLWLWRKKDYIFPLFIAVIGSETFTFLGKLAFH HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHC RPRPEMAVYVENSFSFPSGHATIAVAFYGFLGYLLIRFTQSWNKKVNIFFTTIILIIAIG CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH FSRIYLGVHYISDVWSGYLVGAMWLIIAISFSEWFKHKNRKQASVPPNKLVRTISFGLIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH TAILFYLGFAVSYHPPLGEMPLNNTAIVSKSTDIFVNEQLKYTETLIGEKQEPINFIFLA HHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEECCCHHHHHHHHCCCCCCCEEEEEE ESDDQLLKALQQGGWILTDKANIRSFGKVVNALISKTTYLSAPLSPSFWHAKTQDFSLSK CCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCHHH MASEQSFGHSQHIKIWRTNSLLKTGNHIYVGMSNTLDGLRWGLIPKISPDLDTARERLYL HHHHHCCCCCCCEEEEECCCHHHCCCEEEEEECCCCCCHHHCCCCCCCCCHHHHHHHEEE DLNRKDIIKNQLKIQLVAPLIGKNFMGDQFFTDGKAYIIDFQ ECCHHHHHHHHHHEEEEHHHHCCCCCCCCEEECCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]