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The map label for this gene is cspV [H]

Identifier: 119945576

GI number: 119945576

Start: 2286214

End: 2286423

Strand: Direct

Name: cspV [H]

Synonym: Ping_1881

Alternate gene names: 119945576

Gene position: 2286214-2286423 (Clockwise)

Preceding gene: 119945575

Following gene: 119945578

Centisome position: 50.14

GC content: 40.0

Gene sequence:

>210_bases
ATGTCTAATACAGTACAAGGAACCGTTAAGTGGTTCAACGAATCTAAAGGTTTTGGTTTTATTGAGCAAGCATCTGGTCC
AGATGTATTCGCTCACTTTAGTGCTATTGCAAGCGAAGGTTTCAAAACTTTAGCTGAAGGCCAAAAAGTAGAATTCACTG
TAACGCAAGGTCAAAAAGGCCCGCAAGCAGAAAATATCGTAGCGCTTTAA

Upstream 100 bases:

>100_bases
TTATTCATAATACACGCTCTGTAGTTTTTAAGTGCCAGTCTGTTTTACGCTATTCAAGCCTCTTGAAGGCAATTTTACAT
TCAAATTACAGGATATTATT

Downstream 100 bases:

>100_bases
TTTAGCTAAGATATTTTAGCTCTCATATAGAGCTAATTTAATATTAAAGAAATGGTAAACCTTTACGGGTTTGCCATTTT
TTTTGTCCATTTTAAAGTGG

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSNTVQGTVKWFNESKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVTQGQKGPQAENIVAL

Sequences:

>Translated_69_residues
MSNTVQGTVKWFNESKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVTQGQKGPQAENIVAL
>Mature_68_residues
SNTVQGTVKWFNESKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVTQGQKGPQAENIVAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=66.6666666666667, Blast_Score=92, Evalue=7e-21,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=66.6666666666667, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=60, Blast_Score=86, Evalue=4e-19,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=57.1428571428571, Blast_Score=82, Evalue=6e-18,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=55.8823529411765, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=60, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=53.8461538461538, Blast_Score=72, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7394; Mature: 7263

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTVQGTVKWFNESKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVTQGQKG
CCCCCCEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
PQAENIVAL
CCCCCEECC
>Mature Secondary Structure 
SNTVQGTVKWFNESKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVTQGQKG
CCCCCEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
PQAENIVAL
CCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]