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The map label for this gene is rbn [C]

Identifier: 119945515

GI number: 119945515

Start: 2206882

End: 2208210

Strand: Direct

Name: rbn [C]

Synonym: Ping_1819

Alternate gene names: 119945515

Gene position: 2206882-2208210 (Clockwise)

Preceding gene: 119945514

Following gene: 119945519

Centisome position: 48.4

GC content: 37.02

Gene sequence:

>1329_bases
ATGAAATCATTTATAACAAAGTTCATTAATTTTATTGAAACGGATATTTGGCGGATTCGGGCTAACCAGCTCTCAGGAAT
GAAATTGTTTGGCCTTCGTCAACTTCGTATTATCCTTTTGGCTATTCGTGGTTTTGCTGAAGATAAATGCATGCTGCGCG
CCTCTGCCCTAACTTTTTTCTCTTTATTATCTATGGTCCCGGTTGCAGCGATGGCTTTTGGCATTGCCAAAGGGTTTGGC
TTTGATAAAAAATTAGAAACATTATTATTTGATAACCTGCAGGGTCAGGAAGAGGTCGTTGAGAAACTGATCGGATTTTC
TCAGGCGATGCTTGAAAATACCCAAGGCGGTATTATTGCCGGGATTGGTACTGTCGTATTATTTTGGGCCGTCATTAAAG
TATTAGGTCAGATAGAAGAATCGTTTAATGAGATATGGGGGATTAAAAAAAGTCGAAGTTTTGCAAGAAAGTTTAGCGAT
TATGTCTCTATTATGTTGATTTGCCCTGTTTTATTAATTATATCTAGCAGTACCACCGTTATTATTAGTAGTCAGGTTAC
ACTTCTGGTGGAAAAAATATCCTTTCTCGGGCCGATTGTTCCGCTTATTATTACTAGTCTTAAAATTCTGCCTTATGCTG
TTATTTGGACGGTATTTACTTTTATTTATATTTTTATTCCTAATACCAAAGTAAATTTTAAGGCCGGCCTTTTAGGGGGA
ATTATTGCAGGGACTACCTATCAGATTGTTCAATGGATTTATATAACGTTTCAGGTGGGCGTCTTAAAATATGGTGCCAT
TTATGGGAGCTTTGCGGCCTTACCGCTGTTTTTAGTGTGGCTGCAGATGAGTTGGCTGATTGTCCTTCTAGGCGCAGAGG
TTTCCTTTGCTGAACAAAATGTGGAAACCTATGAATTTGAACCGGATTGTCTAAAAGCCAGCCATTCATTTAAGCGATTA
ATTTCCTTATACATTGTTCTATTAAGTGTTAAAAATTTTTGTAAGGGAGAAAAACCCTGGCACGCCGATCAAATATCACA
TTTTGTGGAATTACCGATTCGGCTTGTACGTCAAATCCTTTTTGAATTAACTGAAGCAGGTCTGTTGGTTGAGGTCAAAT
TAAATGATGCTAATACCTTGTTTTACCAACCGGCACGCGATCCGGAATTCCTTACGATTTTTCATGTTCTGGAAGTATTA
GATCAACATGGTATTGATGCTGTTCCAATTATAAATTCCAAGGAATTAAATAAACTAAAAGAAACTTTTGATAAATTTAA
GACCGCTATTGAAAATTCCCCATCTAATATTGCCTTAAAGGATATTTAA

Upstream 100 bases:

>100_bases
GTTCAATCCCAATAGCTAAAATAAAAGGTATTTATTCTCCTATACTGAGCAAATGCCTTAAGCTTCCTATTTTCTAAACT
TTTATGATAAGGATCTATTA

Downstream 100 bases:

>100_bases
GATAGGGGGCAAAAGCAGGCAGCCATAAATTTTTCCGTCTGGTAAAAAATGCAGTAAAAAGCGACCCAAGGCTGTTGGTA
TTACAGCAAACTGCTTCGCA

Product: putative ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MKSFITKFINFIETDIWRIRANQLSGMKLFGLRQLRIILLAIRGFAEDKCMLRASALTFFSLLSMVPVAAMAFGIAKGFG
FDKKLETLLFDNLQGQEEVVEKLIGFSQAMLENTQGGIIAGIGTVVLFWAVIKVLGQIEESFNEIWGIKKSRSFARKFSD
YVSIMLICPVLLIISSSTTVIISSQVTLLVEKISFLGPIVPLIITSLKILPYAVIWTVFTFIYIFIPNTKVNFKAGLLGG
IIAGTTYQIVQWIYITFQVGVLKYGAIYGSFAALPLFLVWLQMSWLIVLLGAEVSFAEQNVETYEFEPDCLKASHSFKRL
ISLYIVLLSVKNFCKGEKPWHADQISHFVELPIRLVRQILFELTEAGLLVEVKLNDANTLFYQPARDPEFLTIFHVLEVL
DQHGIDAVPIINSKELNKLKETFDKFKTAIENSPSNIALKDI

Sequences:

>Translated_442_residues
MKSFITKFINFIETDIWRIRANQLSGMKLFGLRQLRIILLAIRGFAEDKCMLRASALTFFSLLSMVPVAAMAFGIAKGFG
FDKKLETLLFDNLQGQEEVVEKLIGFSQAMLENTQGGIIAGIGTVVLFWAVIKVLGQIEESFNEIWGIKKSRSFARKFSD
YVSIMLICPVLLIISSSTTVIISSQVTLLVEKISFLGPIVPLIITSLKILPYAVIWTVFTFIYIFIPNTKVNFKAGLLGG
IIAGTTYQIVQWIYITFQVGVLKYGAIYGSFAALPLFLVWLQMSWLIVLLGAEVSFAEQNVETYEFEPDCLKASHSFKRL
ISLYIVLLSVKNFCKGEKPWHADQISHFVELPIRLVRQILFELTEAGLLVEVKLNDANTLFYQPARDPEFLTIFHVLEVL
DQHGIDAVPIINSKELNKLKETFDKFKTAIENSPSNIALKDI
>Mature_442_residues
MKSFITKFINFIETDIWRIRANQLSGMKLFGLRQLRIILLAIRGFAEDKCMLRASALTFFSLLSMVPVAAMAFGIAKGFG
FDKKLETLLFDNLQGQEEVVEKLIGFSQAMLENTQGGIIAGIGTVVLFWAVIKVLGQIEESFNEIWGIKKSRSFARKFSD
YVSIMLICPVLLIISSSTTVIISSQVTLLVEKISFLGPIVPLIITSLKILPYAVIWTVFTFIYIFIPNTKVNFKAGLLGG
IIAGTTYQIVQWIYITFQVGVLKYGAIYGSFAALPLFLVWLQMSWLIVLLGAEVSFAEQNVETYEFEPDCLKASHSFKRL
ISLYIVLLSVKNFCKGEKPWHADQISHFVELPIRLVRQILFELTEAGLLVEVKLNDANTLFYQPARDPEFLTIFHVLEVL
DQHGIDAVPIINSKELNKLKETFDKFKTAIENSPSNIALKDI

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=254, Percent_Identity=24.8031496062992, Blast_Score=82, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 49807; Mature: 49807

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSFITKFINFIETDIWRIRANQLSGMKLFGLRQLRIILLAIRGFAEDKCMLRASALTFF
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
SLLSMVPVAAMAFGIAKGFGFDKKLETLLFDNLQGQEEVVEKLIGFSQAMLENTQGGIIA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEH
GIGTVVLFWAVIKVLGQIEESFNEIWGIKKSRSFARKFSDYVSIMLICPVLLIISSSTTV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
IISSQVTLLVEKISFLGPIVPLIITSLKILPYAVIWTVFTFIYIFIPNTKVNFKAGLLGG
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
IIAGTTYQIVQWIYITFQVGVLKYGAIYGSFAALPLFLVWLQMSWLIVLLGAEVSFAEQN
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
VETYEFEPDCLKASHSFKRLISLYIVLLSVKNFCKGEKPWHADQISHFVELPIRLVRQIL
CCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
FELTEAGLLVEVKLNDANTLFYQPARDPEFLTIFHVLEVLDQHGIDAVPIINSKELNKLK
HHHHCCCEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHH
ETFDKFKTAIENSPSNIALKDI
HHHHHHHHHHCCCCCCEEECCC
>Mature Secondary Structure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HHHHHHHHHHCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA