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The map label for this gene is rlpA [C]

Identifier: 119945475

GI number: 119945475

Start: 2155557

End: 2155940

Strand: Direct

Name: rlpA [C]

Synonym: Ping_1773

Alternate gene names: 119945475

Gene position: 2155557-2155940 (Clockwise)

Preceding gene: 119945474

Following gene: 119945477

Centisome position: 47.28

GC content: 40.89

Gene sequence:

>384_bases
ATGATGACGTTGAGTATTAAACGATTAACTATTGCTGTTTTTGCCATCACTCTTTTCGCTTGTATGCCGGTACTCTCTCG
AAGCCGCGACGGGTATAAAGAAGTTGGGAAAGCTTCTTTTTATGCCAATAAGTTTCAAGGCAGACTGACCGCTAGCGGTG
CTGTTTTTGATCAAAATGCGAAAACAGCAGCGCACAAAAAATTATCTTTTGGGTCAAAAGTGAAAGTAACTAATTTAACA
AATGGCAAAAGTATTATGGTGATCATCAATGACAGAGGCCCTTTTGTAAAAGGGCGTATTATTGACCTGTTACGCTCCGC
ATTCAGTCTTATTGGTTCTCTCGACTCAGGCGTGATTAAAGTGCGAATTGAAGTGGTTCGCTAG

Upstream 100 bases:

>100_bases
AACGATGCTTTAACAATTTATAACACCTATTTATCGCTATACTCAAAGGGTGATCCATTAATTTATTGAGGTGGGGAATG
TTTTTAAAGAAGCCAACAAT

Downstream 100 bases:

>100_bases
TTCTTTCTGTTGGTGATTTGTGTTATCTAGATTGATTGCTTAATCCTTGTAAAAGATTTTCATTTAAGAATCCCTCTTTG
CTTAGATTAAAGGCAATAAA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MMTLSIKRLTIAVFAITLFACMPVLSRSRDGYKEVGKASFYANKFQGRLTASGAVFDQNAKTAAHKKLSFGSKVKVTNLT
NGKSIMVIINDRGPFVKGRIIDLLRSAFSLIGSLDSGVIKVRIEVVR

Sequences:

>Translated_127_residues
MMTLSIKRLTIAVFAITLFACMPVLSRSRDGYKEVGKASFYANKFQGRLTASGAVFDQNAKTAAHKKLSFGSKVKVTNLT
NGKSIMVIINDRGPFVKGRIIDLLRSAFSLIGSLDSGVIKVRIEVVR
>Mature_127_residues
MMTLSIKRLTIAVFAITLFACMPVLSRSRDGYKEVGKASFYANKFQGRLTASGAVFDQNAKTAAHKKLSFGSKVKVTNLT
NGKSIMVIINDRGPFVKGRIIDLLRSAFSLIGSLDSGVIKVRIEVVR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=95, Percent_Identity=41.0526315789474, Blast_Score=73, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 13870; Mature: 13870

Theoretical pI: Translated: 11.37; Mature: 11.37

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTLSIKRLTIAVFAITLFACMPVLSRSRDGYKEVGKASFYANKFQGRLTASGAVFDQNA
CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEECCEEECCCC
KTAAHKKLSFGSKVKVTNLTNGKSIMVIINDRGPFVKGRIIDLLRSAFSLIGSLDSGVIK
CHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHCCCCCCEEE
VRIEVVR
EEEEEEC
>Mature Secondary Structure
MMTLSIKRLTIAVFAITLFACMPVLSRSRDGYKEVGKASFYANKFQGRLTASGAVFDQNA
CCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEECCEEECCCC
KTAAHKKLSFGSKVKVTNLTNGKSIMVIINDRGPFVKGRIIDLLRSAFSLIGSLDSGVIK
CHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHCCCCCCEEE
VRIEVVR
EEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]