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The map label for this gene is ykgF [H]

Identifier: 119945401

GI number: 119945401

Start: 2064654

End: 2066093

Strand: Direct

Name: ykgF [H]

Synonym: Ping_1691

Alternate gene names: 119945401

Gene position: 2064654-2066093 (Clockwise)

Preceding gene: 119945400

Following gene: 119945402

Centisome position: 45.28

GC content: 44.1

Gene sequence:

>1440_bases
ATGCGAGTTAATAAACCTGAAGATTTTTACAAGAACGTTAGCGAGGCGTTAGCACAGCCAGATTTGAAAATGATTATTCG
GCGCACTACAGATAAAGCTGAAACAAAGCGCGCTGAAGCGGTTGCTAACTTTCCAGAGTTTGAGAATGCACGAACACAGG
GACAAAAAGTCAAAGATCATACGATTAAGTATATGGATCATTATTTGGCTGAGTTTGAGAAAAACGCTTTGGCCCAAGGC
ACTATTGTTCACTGGGCGAGTACTGGTGAAGAAGCGTCGAAGATTGTGTTAGATATTTGTCGTCAGCACAAGGCTAAAAA
AGTCACCCGCAGTAAGTCTATGCTAGGTGAAGAAATTGGCTTAACCCATGCTTTTGATAATTCAGAAATGGAGCGGATTG
AAACGGATCTGGCCGAGCATATTATTCAGCTTGCCGGTGATCCCCCTTCTCACATTGTTTGGCCCGCGATGCACCGCAGC
AGAGAAGATGTGGTGAAACTCTTTCGGGAATTTCACGCAGATCCAACCTATTCAGAAGAGATTACTGATCTGGTGAGAAG
TGCCCGTCGCGACCTTCGTAATAAATTTTTAACGTCGGATATTGGCATTAGTGGCTCTAACTTCTTGCTGGCTGATAGTG
GATCTTCTTGTACTGTAACCAATGAAGGTAACGCTGAGCTGACGATAACACCGCCTAAAGTCCATATAGTTACTGCAGGA
ATTGAAAAGTTAGTGCCTTCAATGGCTCATGCTGTGCCGTTGCTGCGCTTGTTAACCCGATCTGCTACCGGAGCAGAAAT
AACACAATACAACACCTTCCATAATGGGCCTAAAAGACCTAATGACGCAGATGGGCCAGAAGAGTGCCATATTGTTTTGG
TGGATAATGGCCGTACTAAAATGCTCGCCGAGGGCATGGAGGCAATGTTGCGTTGTATCCGCTGCGGCGCTTGTATGAAC
CATTGTGTGGTTTATAAGCATATTGGTGGTCATGCTTATGGCTCAGTATACCCTGGACCAATGGGCTCTGTTTTGACTCC
CCATTTAGACAGCCTTGAAGTGGCAAACAAGCAAACCCATGCCTGTACGATGAATGGTCGCTGTGAAGAAGTGTGTCCGG
TTAATATACCACTGCCGACCTTATTGCGCTCGCTACGTGCACAGTCTTGGGATAAAAAATATGAGCCGTTAACAAACCGT
TTTGTGGTGCAATCTTTCGCCATAATGGCTAAAAGGCCGAAGTTATTCCAATTACTTTCTTCTTCTGGGGTTATCTTCAT
GAAAGTGTTTAGCCGTAAAGGATGGATTAAATACATGCCATTTACATCGGGCTGGACGCGTAACCGTGATTTAATTGAGC
CAGAGTCAACGACATTTATGCATCAGTATAAAAAAATAAAGAATGAAAAAATGAAAAAAGCCAAAAAGGGTGGAGCGTAA

Upstream 100 bases:

>100_bases
ATAGCGGGTAAGCTCAACCGAGAAGGCCACAAAGAAATAACCGCATTGCATACCGCTGAGGTGTTGGCGGGTTTAGCGCC
ACAAATTTTAGGAGGCAAAG

Downstream 100 bases:

>100_bases
CGAATGAATAAACACATAAGTGAACTCAGTAGAGCCAAAATATTTAGTGCGATTAAAGCGGCTAAACCAAACGTCACCAT
GGATGTAAATACCATTAGGC

Product: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 479

Protein sequence:

>479_residues
MRVNKPEDFYKNVSEALAQPDLKMIIRRTTDKAETKRAEAVANFPEFENARTQGQKVKDHTIKYMDHYLAEFEKNALAQG
TIVHWASTGEEASKIVLDICRQHKAKKVTRSKSMLGEEIGLTHAFDNSEMERIETDLAEHIIQLAGDPPSHIVWPAMHRS
REDVVKLFREFHADPTYSEEITDLVRSARRDLRNKFLTSDIGISGSNFLLADSGSSCTVTNEGNAELTITPPKVHIVTAG
IEKLVPSMAHAVPLLRLLTRSATGAEITQYNTFHNGPKRPNDADGPEECHIVLVDNGRTKMLAEGMEAMLRCIRCGACMN
HCVVYKHIGGHAYGSVYPGPMGSVLTPHLDSLEVANKQTHACTMNGRCEEVCPVNIPLPTLLRSLRAQSWDKKYEPLTNR
FVVQSFAIMAKRPKLFQLLSSSGVIFMKVFSRKGWIKYMPFTSGWTRNRDLIEPESTTFMHQYKKIKNEKMKKAKKGGA

Sequences:

>Translated_479_residues
MRVNKPEDFYKNVSEALAQPDLKMIIRRTTDKAETKRAEAVANFPEFENARTQGQKVKDHTIKYMDHYLAEFEKNALAQG
TIVHWASTGEEASKIVLDICRQHKAKKVTRSKSMLGEEIGLTHAFDNSEMERIETDLAEHIIQLAGDPPSHIVWPAMHRS
REDVVKLFREFHADPTYSEEITDLVRSARRDLRNKFLTSDIGISGSNFLLADSGSSCTVTNEGNAELTITPPKVHIVTAG
IEKLVPSMAHAVPLLRLLTRSATGAEITQYNTFHNGPKRPNDADGPEECHIVLVDNGRTKMLAEGMEAMLRCIRCGACMN
HCVVYKHIGGHAYGSVYPGPMGSVLTPHLDSLEVANKQTHACTMNGRCEEVCPVNIPLPTLLRSLRAQSWDKKYEPLTNR
FVVQSFAIMAKRPKLFQLLSSSGVIFMKVFSRKGWIKYMPFTSGWTRNRDLIEPESTTFMHQYKKIKNEKMKKAKKGGA
>Mature_479_residues
MRVNKPEDFYKNVSEALAQPDLKMIIRRTTDKAETKRAEAVANFPEFENARTQGQKVKDHTIKYMDHYLAEFEKNALAQG
TIVHWASTGEEASKIVLDICRQHKAKKVTRSKSMLGEEIGLTHAFDNSEMERIETDLAEHIIQLAGDPPSHIVWPAMHRS
REDVVKLFREFHADPTYSEEITDLVRSARRDLRNKFLTSDIGISGSNFLLADSGSSCTVTNEGNAELTITPPKVHIVTAG
IEKLVPSMAHAVPLLRLLTRSATGAEITQYNTFHNGPKRPNDADGPEECHIVLVDNGRTKMLAEGMEAMLRCIRCGACMN
HCVVYKHIGGHAYGSVYPGPMGSVLTPHLDSLEVANKQTHACTMNGRCEEVCPVNIPLPTLLRSLRAQSWDKKYEPLTNR
FVVQSFAIMAKRPKLFQLLSSSGVIFMKVFSRKGWIKYMPFTSGWTRNRDLIEPESTTFMHQYKKIKNEKMKKAKKGGA

Specific function: Unknown

COG id: COG1139

COG function: function code C; Uncharacterized conserved protein containing a ferredoxin-like domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1786498, Length=471, Percent_Identity=36.3057324840764, Blast_Score=341, Evalue=7e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR003741
- InterPro:   IPR004452
- InterPro:   IPR002698
- InterPro:   IPR012285
- InterPro:   IPR009051 [H]

Pfam domain/function: PF02589 DUF162 [H]

EC number: NA

Molecular weight: Translated: 53868; Mature: 53868

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVNKPEDFYKNVSEALAQPDLKMIIRRTTDKAETKRAEAVANFPEFENARTQGQKVKDH
CCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHH
TIKYMDHYLAEFEKNALAQGTIVHWASTGEEASKIVLDICRQHKAKKVTRSKSMLGEEIG
HHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LTHAFDNSEMERIETDLAEHIIQLAGDPPSHIVWPAMHRSREDVVKLFREFHADPTYSEE
CEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHCCHHHHHHHHHHHCCCCCCHHH
ITDLVRSARRDLRNKFLTSDIGISGSNFLLADSGSSCTVTNEGNAELTITPPKVHIVTAG
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCEEEEEECCEEEEEECC
IEKLVPSMAHAVPLLRLLTRSATGAEITQYNTFHNGPKRPNDADGPEECHIVLVDNGRTK
HHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHH
MLAEGMEAMLRCIRCGACMNHCVVYKHIGGHAYGSVYPGPMGSVLTPHLDSLEVANKQTH
HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC
ACTMNGRCEEVCPVNIPLPTLLRSLRAQSWDKKYEPLTNRFVVQSFAIMAKRPKLFQLLS
EEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SSGVIFMKVFSRKGWIKYMPFTSGWTRNRDLIEPESTTFMHQYKKIKNEKMKKAKKGGA
CCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRVNKPEDFYKNVSEALAQPDLKMIIRRTTDKAETKRAEAVANFPEFENARTQGQKVKDH
CCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHH
TIKYMDHYLAEFEKNALAQGTIVHWASTGEEASKIVLDICRQHKAKKVTRSKSMLGEEIG
HHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LTHAFDNSEMERIETDLAEHIIQLAGDPPSHIVWPAMHRSREDVVKLFREFHADPTYSEE
CEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHCCHHHHHHHHHHHCCCCCCHHH
ITDLVRSARRDLRNKFLTSDIGISGSNFLLADSGSSCTVTNEGNAELTITPPKVHIVTAG
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCEEEEEECCEEEEEECC
IEKLVPSMAHAVPLLRLLTRSATGAEITQYNTFHNGPKRPNDADGPEECHIVLVDNGRTK
HHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCCHH
MLAEGMEAMLRCIRCGACMNHCVVYKHIGGHAYGSVYPGPMGSVLTPHLDSLEVANKQTH
HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC
ACTMNGRCEEVCPVNIPLPTLLRSLRAQSWDKKYEPLTNRFVVQSFAIMAKRPKLFQLLS
EEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SSGVIFMKVFSRKGWIKYMPFTSGWTRNRDLIEPESTTFMHQYKKIKNEKMKKAKKGGA
CCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]