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The map label for this gene is ygcI [H]

Identifier: 119945307

GI number: 119945307

Start: 1945022

End: 1945675

Strand: Direct

Name: ygcI [H]

Synonym: Ping_1590

Alternate gene names: 119945307

Gene position: 1945022-1945675 (Clockwise)

Preceding gene: 119945306

Following gene: 119945308

Centisome position: 42.66

GC content: 43.58

Gene sequence:

>654_bases
ATGAAAACCTTGATATTAAAAACCGAAGGAATGTCGGCCTACGGTCTGCAAACTTTTGATGTGCACCGTAGAGCAAATCA
CTTTCCAACGCGCTCAGCCATTATGGGCATTCTGGGTGCCGCCATGGGGATAACTCGTGAAAATTTTAATGAACTATATG
CGCTCTCGGAGCAGCTTAAAATTGCAGTACAAGTGAACCTGAGTGGCGAAAAAATGGTGGATTACCATACAGTCCAACAC
TTTCGCAGTCCACAGGGGAAAATTCAAAAGGGAGTTAAACCGACCTACCGGGAATACTGGTGTGATAGCGAACATACCTT
TGCAATCAGTGCTGCTGAGCACGTAATTGAAAAATTGGTAAACAGTGTGAAATTTCCTGAATTTACTCTGTTTCAGGGGC
GTAAATCTTGTCCTTTAACCCGGCCATTATTTGAAGCTGTAACTGATGATGATAACCCCGCCAATGCGTTGAAAAACCAT
GGAGAACAAGGTCAAATTTTTAGTGATATTAGCGGCGATAATCAACTGGCGATTGTCCAGGTGCGCGACTTGATCACCGC
AATACCACGCAAATACGCCATGCGGACAGTCTATGTTTGCGGTCAAATAGCAAAAGTACAGAATGATAAGGAGGAAATGA
ATGAACCTGCTTAA

Upstream 100 bases:

>100_bases
CGATAGCACTCGATTTAACCGATAGTGCGCAAAGTAAACAAATCAATTTGGTTAACAAAATCAGTGATATTCGTTTTTAA
GTTTGCATAGGATACGTGTG

Downstream 100 bases:

>100_bases
AGACGATTTTATTTCAACCTCACAAGGCAAAATCTCCTTAAAAACAATTTTAACCGGTGAGCAGAACTATCAACTGCAAT
ACTATTTTGATGAAATTCAG

Product: CRISPR-associated Cas5 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MKTLILKTEGMSAYGLQTFDVHRRANHFPTRSAIMGILGAAMGITRENFNELYALSEQLKIAVQVNLSGEKMVDYHTVQH
FRSPQGKIQKGVKPTYREYWCDSEHTFAISAAEHVIEKLVNSVKFPEFTLFQGRKSCPLTRPLFEAVTDDDNPANALKNH
GEQGQIFSDISGDNQLAIVQVRDLITAIPRKYAMRTVYVCGQIAKVQNDKEEMNEPA

Sequences:

>Translated_217_residues
MKTLILKTEGMSAYGLQTFDVHRRANHFPTRSAIMGILGAAMGITRENFNELYALSEQLKIAVQVNLSGEKMVDYHTVQH
FRSPQGKIQKGVKPTYREYWCDSEHTFAISAAEHVIEKLVNSVKFPEFTLFQGRKSCPLTRPLFEAVTDDDNPANALKNH
GEQGQIFSDISGDNQLAIVQVRDLITAIPRKYAMRTVYVCGQIAKVQNDKEEMNEPA
>Mature_217_residues
MKTLILKTEGMSAYGLQTFDVHRRANHFPTRSAIMGILGAAMGITRENFNELYALSEQLKIAVQVNLSGEKMVDYHTVQH
FRSPQGKIQKGVKPTYREYWCDSEHTFAISAAEHVIEKLVNSVKFPEFTLFQGRKSCPLTRPLFEAVTDDDNPANALKNH
GEQGQIFSDISGDNQLAIVQVRDLITAIPRKYAMRTVYVCGQIAKVQNDKEEMNEPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082154, Length=212, Percent_Identity=37.7358490566038, Blast_Score=100, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021124
- InterPro:   IPR013422
- InterPro:   IPR010147 [H]

Pfam domain/function: PF09704 Cas_Cas5d [H]

EC number: NA

Molecular weight: Translated: 24463; Mature: 24463

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLILKTEGMSAYGLQTFDVHRRANHFPTRSAIMGILGAAMGITRENFNELYALSEQLK
CCEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEE
IAVQVNLSGEKMVDYHTVQHFRSPQGKIQKGVKPTYREYWCDSEHTFAISAAEHVIEKLV
EEEEEECCCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHHCCCCCCEEEHHHHHHHHHHHH
NSVKFPEFTLFQGRKSCPLTRPLFEAVTDDDNPANALKNHGEQGQIFSDISGDNQLAIVQ
HHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCEEECCCCCCCEEEEH
VRDLITAIPRKYAMRTVYVCGQIAKVQNDKEEMNEPA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC
>Mature Secondary Structure
MKTLILKTEGMSAYGLQTFDVHRRANHFPTRSAIMGILGAAMGITRENFNELYALSEQLK
CCEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEE
IAVQVNLSGEKMVDYHTVQHFRSPQGKIQKGVKPTYREYWCDSEHTFAISAAEHVIEKLV
EEEEEECCCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHHCCCCCCEEEHHHHHHHHHHHH
NSVKFPEFTLFQGRKSCPLTRPLFEAVTDDDNPANALKNHGEQGQIFSDISGDNQLAIVQ
HHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCEEECCCCCCCEEEEH
VRDLITAIPRKYAMRTVYVCGQIAKVQNDKEEMNEPA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]