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The map label for this gene is yhcM [H]

Identifier: 119945293

GI number: 119945293

Start: 1925177

End: 1926367

Strand: Direct

Name: yhcM [H]

Synonym: Ping_1575

Alternate gene names: 119945293

Gene position: 1925177-1926367 (Clockwise)

Preceding gene: 119945291

Following gene: 119945295

Centisome position: 42.22

GC content: 45.51

Gene sequence:

>1191_bases
ATGCCTGATGGGTCAAGCAGTACACTGACAGTTAACTCCCCACTTGGCGTATATCAAGCGCAATTGGGTAGCAAGCTTGT
TGACGATCCCTCACAACTACAAGCAATAATTGCTCTGGATGCACTGTTTAGCCAATTAAATCAGCAAAGTACAACGTCAC
CCGGGCCCATTAAAGGGCTTTACCTGTGGGGCGACGTGGGACGGGGTAAAACATTTTTAATGGACTTGTTTTATGATTGC
TTGCCACAGGAAGGCAAACTGAGACTGCACTTTCATCATTTTATGGCACGCATTCATCACGCCCTCAAAGAGCATGCAGG
TCAACAAGATCCTTTGGTGCTCATTGCCAAAGACCTGGCTAAAGAATGCCATATATTGTGTTTTGATGAGTTTTTTGTTT
CCGACATTGGCGATGCCATGATACTGGCAGGTTTGTTTGCATCTTTGTTTAAACAAGGGGTGGTGTTAGTCGCTACGTCG
AATATACCCATCGAGCGTTTATATGAAAATGGCTTAGCCCGGCATAAATTTTTGCCCTGCATTGCCCTGCTACAACAACA
TACGCAAATGTTGCATCTGGACGGTGAGCAAGATCACCGCTTACATCAACTAGATGTACAACAAAATGAAACTGGGTTTA
TCACCCCATCCAGGCATGTGGGAATGACTGGGGAAATGGATTTTTCAGCTGTTTTTTCTGAACTAACGCAAGCCACTCCC
TCAGCAAAAACCAACCATAGCAGCATCAACATCTGCCACCGTGAGATCACTGTGGTTTGCGCCACTGACAGCAATATTCC
AAACTCAATTGTGTGGTTCGACTTTTACGCTTTGTGTGATGGCCCCCGTTCGCAACTTGACTATATGGAAATTGCCACTC
GCTTTAATACTGTGATGATAAGTGGTGTACCGCAATTAGGTGGCCAGGTACGGGGATGGATTAAGGCCCGTGGCACCGAA
GATGGCATAGGTGATAACCAGGCTACCAGCACTGGTGAGCGTATATTATCTTATGCGGCTAATGACGATATGGCCCGGCG
TTTTATCAGCCTAATTGATGAGTTATATGAGCAAAAAGTAAGGCCCTATTTAAGCTGTGATGTGCCATTTGCCGAGCTTT
ATTTAGAAGGCGCACTGATATTTGAATTTCGCCGCACGTATAGTCGCCTGATTGAAATGAGTCAGGGCTAA

Upstream 100 bases:

>100_bases
ATGCATGCAGCGTGCGACAACAGTAAATCACATTTGGCTGCGGCGCTAAAAACAGTTATAGTTCGCGTCTAAATTTAGTC
ATTGTTTGGAGATGTTCACT

Downstream 100 bases:

>100_bases
GTAAGTTTTCTCAGAAGCAAAAAGTTGTTGTTAGGGGGACGCCATCCTTTACGTGTGTGACATGCCATTACTCATAAGCC
TGTCACTTGTTTGGTTTAAC

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MPDGSSSTLTVNSPLGVYQAQLGSKLVDDPSQLQAIIALDALFSQLNQQSTTSPGPIKGLYLWGDVGRGKTFLMDLFYDC
LPQEGKLRLHFHHFMARIHHALKEHAGQQDPLVLIAKDLAKECHILCFDEFFVSDIGDAMILAGLFASLFKQGVVLVATS
NIPIERLYENGLARHKFLPCIALLQQHTQMLHLDGEQDHRLHQLDVQQNETGFITPSRHVGMTGEMDFSAVFSELTQATP
SAKTNHSSINICHREITVVCATDSNIPNSIVWFDFYALCDGPRSQLDYMEIATRFNTVMISGVPQLGGQVRGWIKARGTE
DGIGDNQATSTGERILSYAANDDMARRFISLIDELYEQKVRPYLSCDVPFAELYLEGALIFEFRRTYSRLIEMSQG

Sequences:

>Translated_396_residues
MPDGSSSTLTVNSPLGVYQAQLGSKLVDDPSQLQAIIALDALFSQLNQQSTTSPGPIKGLYLWGDVGRGKTFLMDLFYDC
LPQEGKLRLHFHHFMARIHHALKEHAGQQDPLVLIAKDLAKECHILCFDEFFVSDIGDAMILAGLFASLFKQGVVLVATS
NIPIERLYENGLARHKFLPCIALLQQHTQMLHLDGEQDHRLHQLDVQQNETGFITPSRHVGMTGEMDFSAVFSELTQATP
SAKTNHSSINICHREITVVCATDSNIPNSIVWFDFYALCDGPRSQLDYMEIATRFNTVMISGVPQLGGQVRGWIKARGTE
DGIGDNQATSTGERILSYAANDDMARRFISLIDELYEQKVRPYLSCDVPFAELYLEGALIFEFRRTYSRLIEMSQG
>Mature_395_residues
PDGSSSTLTVNSPLGVYQAQLGSKLVDDPSQLQAIIALDALFSQLNQQSTTSPGPIKGLYLWGDVGRGKTFLMDLFYDCL
PQEGKLRLHFHHFMARIHHALKEHAGQQDPLVLIAKDLAKECHILCFDEFFVSDIGDAMILAGLFASLFKQGVVLVATSN
IPIERLYENGLARHKFLPCIALLQQHTQMLHLDGEQDHRLHQLDVQQNETGFITPSRHVGMTGEMDFSAVFSELTQATPS
AKTNHSSINICHREITVVCATDSNIPNSIVWFDFYALCDGPRSQLDYMEIATRFNTVMISGVPQLGGQVRGWIKARGTED
GIGDNQATSTGERILSYAANDDMARRFISLIDELYEQKVRPYLSCDVPFAELYLEGALIFEFRRTYSRLIEMSQG

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=407, Percent_Identity=33.6609336609337, Blast_Score=188, Evalue=8e-48,
Organism=Escherichia coli, GI1789627, Length=347, Percent_Identity=39.7694524495677, Blast_Score=236, Evalue=2e-63,
Organism=Caenorhabditis elegans, GI17505769, Length=347, Percent_Identity=31.9884726224784, Blast_Score=162, Evalue=3e-40,
Organism=Saccharomyces cerevisiae, GI6320783, Length=363, Percent_Identity=30.0275482093664, Blast_Score=152, Evalue=1e-37,
Organism=Drosophila melanogaster, GI20129913, Length=429, Percent_Identity=31.2354312354312, Blast_Score=167, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 44218; Mature: 44087

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDGSSSTLTVNSPLGVYQAQLGSKLVDDPSQLQAIIALDALFSQLNQQSTTSPGPIKGL
CCCCCCCEEEECCCCHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
YLWGDVGRGKTFLMDLFYDCLPQEGKLRLHFHHFMARIHHALKEHAGQQDPLVLIAKDLA
EEEECCCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHH
KECHILCFDEFFVSDIGDAMILAGLFASLFKQGVVLVATSNIPIERLYENGLARHKFLPC
HHCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCHHHHHHHHH
IALLQQHTQMLHLDGEQDHRLHQLDVQQNETGFITPSRHVGMTGEMDFSAVFSELTQATP
HHHHHHHHHEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
SAKTNHSSINICHREITVVCATDSNIPNSIVWFDFYALCDGPRSQLDYMEIATRFNTVMI
CCCCCCCCEEEEEEEEEEEEEECCCCCCCCCEEEHHHHCCCCHHHHHHHHHHHHHCEEEE
SGVPQLGGQVRGWIKARGTEDGIGDNQATSTGERILSYAANDDMARRFISLIDELYEQKV
ECCHHHCCHHEEHEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
RPYLSCDVPFAELYLEGALIFEFRRTYSRLIEMSQG
CCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PDGSSSTLTVNSPLGVYQAQLGSKLVDDPSQLQAIIALDALFSQLNQQSTTSPGPIKGL
CCCCCCEEEECCCCHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
YLWGDVGRGKTFLMDLFYDCLPQEGKLRLHFHHFMARIHHALKEHAGQQDPLVLIAKDLA
EEEECCCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHH
KECHILCFDEFFVSDIGDAMILAGLFASLFKQGVVLVATSNIPIERLYENGLARHKFLPC
HHCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCHHHHHHHHH
IALLQQHTQMLHLDGEQDHRLHQLDVQQNETGFITPSRHVGMTGEMDFSAVFSELTQATP
HHHHHHHHHEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
SAKTNHSSINICHREITVVCATDSNIPNSIVWFDFYALCDGPRSQLDYMEIATRFNTVMI
CCCCCCCCEEEEEEEEEEEEEECCCCCCCCCEEEHHHHCCCCHHHHHHHHHHHHHCEEEE
SGVPQLGGQVRGWIKARGTEDGIGDNQATSTGERILSYAANDDMARRFISLIDELYEQKV
ECCHHHCCHHEEHEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
RPYLSCDVPFAELYLEGALIFEFRRTYSRLIEMSQG
CCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]