Click here to switch to the map view.

The map label for this gene is yebA [C]

Identifier: 119945271

GI number: 119945271

Start: 1893078

End: 1894088

Strand: Direct

Name: yebA [C]

Synonym: Ping_1544

Alternate gene names: 119945271

Gene position: 1893078-1894088 (Clockwise)

Preceding gene: 119945269

Following gene: 119945272

Centisome position: 41.52

GC content: 35.11

Gene sequence:

>1011_bases
ATGAAAGATAAATCAATTATTACCATCTCTACCATTAATGGTACAAGAGGGTTTCATCTAGCCCCATGGCACTTTAAAAC
ATTTAAAATAGTCTCTGCATTAATTGTATTTTTTTTCCTAGCTCTCACCATAAATTTATTTGAGCTCTCTGATAAAATGG
ACCAAGTGACTCTTTCTGAGAACCAATTAATAAGCCAAGCAAATAAATTACAACACCAATTAATAAGCCAAGAAAATACA
TTGCAAGGTACCATTACTGATTTAAGTGATGAAAAGCTAGAACTTAAACAAGACATAAATCAACGTGATTCTATGTTAGA
TAAGTTTTACACACGATTAAATAATCTAGAAAATTACTTAGAAGGTGATTCTTCGCTTAATGATACAAAACAAAACTTAG
GTGCCAGCGAAAGTATTGATAGTCGTTTAAATGCAGCAACCATAAACTCAGCACTCAGAATCAACTTTCTACGCAATGTA
CCTAATGGATCACCAGTAAAAAAAGCTCGATTATCATCACAATTTGGATACCGCACTCACCCTGTGACCAAGAAACGGAA
AAAGCACAGAGGTTTGGATTTTGCAGTTAATACTGGAACGCCTATCTATGCCACTGCAGATGGTGTTGTTGAAATGGCAA
GGAAAAGTAATTTAGGCTCTGGAAATTTTTTACGTATTCAGCATAGCCATGGTTTCAGTAGTTCTTTTTCTCACATGAAA
TCTTTCAAAGCACACAGTGGTCAGTTTGTTGAAAAAGGGCAATTAATTGGATATTCTGGCAATACTGGTATGTCTTCAGG
TCCGCACTTGCATTATGAAATTCGTTTTGTAGGACGAGCCTTAGATCCACTCAATTTCGTGAGATGGAATAATGATAACT
TCGATACAATATATGAAAAAGAAAAGGGAATAAAATGGGATTATTTAGTTCAAAAACAGGAACAACAGATCAACATTCAA
CTGCAACTGTTATCGCAACTGGATGCAGCATTACTGGTACAGTCCAATTAG

Upstream 100 bases:

>100_bases
TATTACTTTAAAAGCAGTTATTATTGTCAGCATCTGATCAAAATATAAGAGATTTTAGCACAATGATGGAAATATTCTCA
AACGGCAATTATCTACTCTC

Downstream 100 bases:

>100_bases
CATGCGACATTCAAATTGACGGTGAAGTTGAAGGGAAAATAATCTCTGAAAAATCAATTGTCATTAGCCATTCAGGTAAG
GTCAAAGGCGAAGTTTATGC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MKDKSIITISTINGTRGFHLAPWHFKTFKIVSALIVFFFLALTINLFELSDKMDQVTLSENQLISQANKLQHQLISQENT
LQGTITDLSDEKLELKQDINQRDSMLDKFYTRLNNLENYLEGDSSLNDTKQNLGASESIDSRLNAATINSALRINFLRNV
PNGSPVKKARLSSQFGYRTHPVTKKRKKHRGLDFAVNTGTPIYATADGVVEMARKSNLGSGNFLRIQHSHGFSSSFSHMK
SFKAHSGQFVEKGQLIGYSGNTGMSSGPHLHYEIRFVGRALDPLNFVRWNNDNFDTIYEKEKGIKWDYLVQKQEQQINIQ
LQLLSQLDAALLVQSN

Sequences:

>Translated_336_residues
MKDKSIITISTINGTRGFHLAPWHFKTFKIVSALIVFFFLALTINLFELSDKMDQVTLSENQLISQANKLQHQLISQENT
LQGTITDLSDEKLELKQDINQRDSMLDKFYTRLNNLENYLEGDSSLNDTKQNLGASESIDSRLNAATINSALRINFLRNV
PNGSPVKKARLSSQFGYRTHPVTKKRKKHRGLDFAVNTGTPIYATADGVVEMARKSNLGSGNFLRIQHSHGFSSSFSHMK
SFKAHSGQFVEKGQLIGYSGNTGMSSGPHLHYEIRFVGRALDPLNFVRWNNDNFDTIYEKEKGIKWDYLVQKQEQQINIQ
LQLLSQLDAALLVQSN
>Mature_336_residues
MKDKSIITISTINGTRGFHLAPWHFKTFKIVSALIVFFFLALTINLFELSDKMDQVTLSENQLISQANKLQHQLISQENT
LQGTITDLSDEKLELKQDINQRDSMLDKFYTRLNNLENYLEGDSSLNDTKQNLGASESIDSRLNAATINSALRINFLRNV
PNGSPVKKARLSSQFGYRTHPVTKKRKKHRGLDFAVNTGTPIYATADGVVEMARKSNLGSGNFLRIQHSHGFSSSFSHMK
SFKAHSGQFVEKGQLIGYSGNTGMSSGPHLHYEIRFVGRALDPLNFVRWNNDNFDTIYEKEKGIKWDYLVQKQEQQINIQ
LQLLSQLDAALLVQSN

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=121, Percent_Identity=40.495867768595, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87082174, Length=155, Percent_Identity=29.6774193548387, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=37.3737373737374, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 38030; Mature: 38030

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDKSIITISTINGTRGFHLAPWHFKTFKIVSALIVFFFLALTINLFELSDKMDQVTLSE
CCCCEEEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEECCH
NQLISQANKLQHQLISQENTLQGTITDLSDEKLELKQDINQRDSMLDKFYTRLNNLENYL
HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
EGDSSLNDTKQNLGASESIDSRLNAATINSALRINFLRNVPNGSPVKKARLSSQFGYRTH
CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHEEEEHHCCCCCCCHHHHHHHHHCCCCCC
PVTKKRKKHRGLDFAVNTGTPIYATADGVVEMARKSNLGSGNFLRIQHSHGFSSSFSHMK
CCCHHHHHHCCCEEEEECCCCEEEEHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHH
SFKAHSGQFVEKGQLIGYSGNTGMSSGPHLHYEIRFVGRALDPLNFVRWNNDNFDTIYEK
HHHHCCCCEEECCEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCEEEECCCCCHHHHHH
EKGIKWDYLVQKQEQQINIQLQLLSQLDAALLVQSN
CCCCCHHHHHHCCHHHHHHHHHHHHHCCCEEEEECC
>Mature Secondary Structure
MKDKSIITISTINGTRGFHLAPWHFKTFKIVSALIVFFFLALTINLFELSDKMDQVTLSE
CCCCEEEEEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEECCH
NQLISQANKLQHQLISQENTLQGTITDLSDEKLELKQDINQRDSMLDKFYTRLNNLENYL
HHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
EGDSSLNDTKQNLGASESIDSRLNAATINSALRINFLRNVPNGSPVKKARLSSQFGYRTH
CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHEEEEHHCCCCCCCHHHHHHHHHCCCCCC
PVTKKRKKHRGLDFAVNTGTPIYATADGVVEMARKSNLGSGNFLRIQHSHGFSSSFSHMK
CCCHHHHHHCCCEEEEECCCCEEEEHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHH
SFKAHSGQFVEKGQLIGYSGNTGMSSGPHLHYEIRFVGRALDPLNFVRWNNDNFDTIYEK
HHHHCCCCEEECCEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCEEEECCCCCHHHHHH
EKGIKWDYLVQKQEQQINIQLQLLSQLDAALLVQSN
CCCCCHHHHHHCCHHHHHHHHHHHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]