Click here to switch to the map view.

The map label for this gene is ybaK [H]

Identifier: 119945197

GI number: 119945197

Start: 1806241

End: 1806708

Strand: Direct

Name: ybaK [H]

Synonym: Ping_1461

Alternate gene names: 119945197

Gene position: 1806241-1806708 (Clockwise)

Preceding gene: 119945196

Following gene: 119945198

Centisome position: 39.61

GC content: 39.53

Gene sequence:

>468_bases
ATGACACCAGCCGTTGATCTCCTTAATAAACACAAAATGAAATTTAAAATTCATCAATACCAGCACGATAAAAACTGTGA
TGCCTATGGATTGGAAGCCGCCCAGAAAATGGGGATTGATGGACAGCTGGTTTTTAAAACATTAGTGGTCAATGTTGATA
ATGAAAATCTGCTAGTGTGCATTTTACCCGTAACCAAAATGCTCAACTTGAAAAAAGTGGCTAAAGTCTGCACTGCTAAA
AAAGTGGTCTTGGCAGATAAACAAGCAGTGCTTCGTTCAACGGGTTATGTACTTGGTGGAGTGAGTCCCTTGGGGCAGAA
AAAACGTTTAAAAACTGTCTTAGATAATAGTGCATTAGCATTGCAGTGCCTTTATGTGAGTGCGGGGAAAAGAGGGCTGG
AGATAGCATTAAATCCAACGGATTTAATCAACCTCACAAATGCACTTAACGCTGATATTTGCCAATAA

Upstream 100 bases:

>100_bases
TGCATTGATTAATAAAATGAGAATTACTTAGTTATAGGTACTGCGCTAAAACGCGTCTAAACAGCAGCAAAAAAAATTGC
TTTATAAGGTAGAAAGAAAG

Downstream 100 bases:

>100_bases
ACCTTATAATACTTATCATTCGACCACTTTGGGAATATTCTTTAATGTTAAAATTAATCAATTTAGGTTTGTTATCTGGT
TTGTTTTTCAGTGCTACCTT

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MTPAVDLLNKHKMKFKIHQYQHDKNCDAYGLEAAQKMGIDGQLVFKTLVVNVDNENLLVCILPVTKMLNLKKVAKVCTAK
KVVLADKQAVLRSTGYVLGGVSPLGQKKRLKTVLDNSALALQCLYVSAGKRGLEIALNPTDLINLTNALNADICQ

Sequences:

>Translated_155_residues
MTPAVDLLNKHKMKFKIHQYQHDKNCDAYGLEAAQKMGIDGQLVFKTLVVNVDNENLLVCILPVTKMLNLKKVAKVCTAK
KVVLADKQAVLRSTGYVLGGVSPLGQKKRLKTVLDNSALALQCLYVSAGKRGLEIALNPTDLINLTNALNADICQ
>Mature_154_residues
TPAVDLLNKHKMKFKIHQYQHDKNCDAYGLEAAQKMGIDGQLVFKTLVVNVDNENLLVCILPVTKMLNLKKVAKVCTAKK
VVLADKQAVLRSTGYVLGGVSPLGQKKRLKTVLDNSALALQCLYVSAGKRGLEIALNPTDLINLTNALNADICQ

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=157, Percent_Identity=49.6815286624204, Blast_Score=149, Evalue=7e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16931; Mature: 16800

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAVDLLNKHKMKFKIHQYQHDKNCDAYGLEAAQKMGIDGQLVFKTLVVNVDNENLLVC
CCCHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCEEEEEEEEEECCCCEEEE
ILPVTKMLNLKKVAKVCTAKKVVLADKQAVLRSTGYVLGGVSPLGQKKRLKTVLDNSALA
EECHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCCCCEE
LQCLYVSAGKRGLEIALNPTDLINLTNALNADICQ
EEEEEEECCCCCEEEEECCHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TPAVDLLNKHKMKFKIHQYQHDKNCDAYGLEAAQKMGIDGQLVFKTLVVNVDNENLLVC
CCHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCEEEEEEEEEECCCCEEEE
ILPVTKMLNLKKVAKVCTAKKVVLADKQAVLRSTGYVLGGVSPLGQKKRLKTVLDNSALA
EECHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCCCCEE
LQCLYVSAGKRGLEIALNPTDLINLTNALNADICQ
EEEEEEECCCCCEEEEECCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]