| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
Click here to switch to the map view.
The map label for this gene is yhcX [H]
Identifier: 119945153
GI number: 119945153
Start: 1738636
End: 1740162
Strand: Direct
Name: yhcX [H]
Synonym: Ping_1417
Alternate gene names: 119945153
Gene position: 1738636-1740162 (Clockwise)
Preceding gene: 119945152
Following gene: 119945159
Centisome position: 38.13
GC content: 39.16
Gene sequence:
>1527_bases ATGGAAGCCAATCATGTTGAAGTCAGGCATTTAACCAAGCAGGATATGCAGGAACTGCAAAATGCCTGTGCAGATGTATA CCACATAGACAAACTTAATACTTGGGATGAATATGCTATAGATACCCTGTTAAGCCGTTTTCCCGATGGGCAAATATGTG TTTGTGTGGACGGTAAAGTGGTCGGTTGTGCTTTGTCATTAATCATTGATTACGCAAAATTTGGCGATGATCATACTTAT AATGAAATCACCTCAAATATGACTTTTACTAAGCATGATCCGGATGGGGATGTTCTATATGGTATTGAAGTGTTTATTCA TCCTGACTATCGGGGATTAAGACTGGCACGTCGTTTATATGTGGCAAGAAAAGAGTTATGTGAAAATCTTAATTTGCGTT CCATTATGGCGGGTGGTCGTATGCCCAATTATTCAAAATTTGCGGATCAATTCACTGCCAAACAATATATAACCAAAGTA AAAGAAAAAGAAATTTATGATCCGGTATTAAGTTTTCAATTAGCCAATGATTTTTTTGTGCGTAAGCTGCTCAAAAATTA CCTTGCCGGTGATGTTGAGTCAATGGAATATGCCACCTTATTAGAATGGCCAAATATTTATTATACCCGTTCAGTTAAAC TGATTAATGCACCTAAAACAGAAGTGCGTATTGGTTTAGTACAATGGCAAATGCGCAGCATGGCCGATTTGAATGATCTC TATGAACAAATTGAATTTTTTGTGGATGCGGTATCGGATTATGAAAGTGACTTTATTCTTTTTCCGGAACTGTTTAACGC ACCTCTGATGGCCCAATTCCATCATTTAAATATTCCGGAAACTATCCGTAAGTTAGCGGATTATACTATTCCGATTCGTG ATAAATTTATTGAGTTTGCTATTACCTACAATATCAATATTATCACCGGCAGCATGCCCTATGTGGTTGACGACAAGCTC TATAATTCCGGGTTTTTATGCCGCCGGGACGGGACTTGGGAGCGTTATGATAAATTACACGTCACCCCTTCAGAAAAAAG AAATTGGATAATGACCGGAGGGGATAAGATTGAAGTCTTTGATACCGACTGTGGCAAAGTGGGGATTATGATCTGCTACG ATGTTGAATTTCCAGAATATGTGCGTTTATTGGCTGATCAAGGTATGAATATCTTATTTGTGCCCTTTTTAACTGATACT CAAAATGGTTACACTCGTGTGCGTCATTGTGCCATGGCACGTGCGATTGAAAATGAGTGTTATGTGGCTATTGCAGGGGC GGTCGGTAACCTTGCCCGGGTCAATAATATGGATATTCAGTATGCGCAATCTGCATTGTTTACGCCTTCTGATTTTGCAT TTCCAACCACAGGTATTAAAGCGGAAGCAACCCCTAACTCTGAAATGAGCTTAATTGTGGATGTTAATTTAGATCTCTTA AAAGCATTACATAACCACGGCAGTGTGCATGCGATGAAAGATCGCCGCCATGATCTGTATTCGCTTAAACGTATAGATAA ACAATGA
Upstream 100 bases:
>100_bases AGCACTGAGCAGCAACTTCTCCCATGGAATTTGCACAATACAGAACAGCGGAATAAATACACCGATTCTAATCCGCTGTT GATTATTTAAAGGAAAAATT
Downstream 100 bases:
>100_bases ACACGATATGGTGAAAGGCTGAAGGCTATAAAGAGCTGAAAAGCTCGAAGCTCGAAGCTCGAAAGCTCGAAGCTCTAAAG CTCGAAGCTCGAAGCCCGAA
Product: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 508; Mature: 508
Protein sequence:
>508_residues MEANHVEVRHLTKQDMQELQNACADVYHIDKLNTWDEYAIDTLLSRFPDGQICVCVDGKVVGCALSLIIDYAKFGDDHTY NEITSNMTFTKHDPDGDVLYGIEVFIHPDYRGLRLARRLYVARKELCENLNLRSIMAGGRMPNYSKFADQFTAKQYITKV KEKEIYDPVLSFQLANDFFVRKLLKNYLAGDVESMEYATLLEWPNIYYTRSVKLINAPKTEVRIGLVQWQMRSMADLNDL YEQIEFFVDAVSDYESDFILFPELFNAPLMAQFHHLNIPETIRKLADYTIPIRDKFIEFAITYNINIITGSMPYVVDDKL YNSGFLCRRDGTWERYDKLHVTPSEKRNWIMTGGDKIEVFDTDCGKVGIMICYDVEFPEYVRLLADQGMNILFVPFLTDT QNGYTRVRHCAMARAIENECYVAIAGAVGNLARVNNMDIQYAQSALFTPSDFAFPTTGIKAEATPNSEMSLIVDVNLDLL KALHNHGSVHAMKDRRHDLYSLKRIDKQ
Sequences:
>Translated_508_residues MEANHVEVRHLTKQDMQELQNACADVYHIDKLNTWDEYAIDTLLSRFPDGQICVCVDGKVVGCALSLIIDYAKFGDDHTY NEITSNMTFTKHDPDGDVLYGIEVFIHPDYRGLRLARRLYVARKELCENLNLRSIMAGGRMPNYSKFADQFTAKQYITKV KEKEIYDPVLSFQLANDFFVRKLLKNYLAGDVESMEYATLLEWPNIYYTRSVKLINAPKTEVRIGLVQWQMRSMADLNDL YEQIEFFVDAVSDYESDFILFPELFNAPLMAQFHHLNIPETIRKLADYTIPIRDKFIEFAITYNINIITGSMPYVVDDKL YNSGFLCRRDGTWERYDKLHVTPSEKRNWIMTGGDKIEVFDTDCGKVGIMICYDVEFPEYVRLLADQGMNILFVPFLTDT QNGYTRVRHCAMARAIENECYVAIAGAVGNLARVNNMDIQYAQSALFTPSDFAFPTTGIKAEATPNSEMSLIVDVNLDLL KALHNHGSVHAMKDRRHDLYSLKRIDKQ >Mature_508_residues MEANHVEVRHLTKQDMQELQNACADVYHIDKLNTWDEYAIDTLLSRFPDGQICVCVDGKVVGCALSLIIDYAKFGDDHTY NEITSNMTFTKHDPDGDVLYGIEVFIHPDYRGLRLARRLYVARKELCENLNLRSIMAGGRMPNYSKFADQFTAKQYITKV KEKEIYDPVLSFQLANDFFVRKLLKNYLAGDVESMEYATLLEWPNIYYTRSVKLINAPKTEVRIGLVQWQMRSMADLNDL YEQIEFFVDAVSDYESDFILFPELFNAPLMAQFHHLNIPETIRKLADYTIPIRDKFIEFAITYNINIITGSMPYVVDDKL YNSGFLCRRDGTWERYDKLHVTPSEKRNWIMTGGDKIEVFDTDCGKVGIMICYDVEFPEYVRLLADQGMNILFVPFLTDT QNGYTRVRHCAMARAIENECYVAIAGAVGNLARVNNMDIQYAQSALFTPSDFAFPTTGIKAEATPNSEMSLIVDVNLDLL KALHNHGSVHAMKDRRHDLYSLKRIDKQ
Specific function: Unknown
COG id: COG0388
COG function: function code R; Predicted amidohydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 N-acetyltransferase domain [H]
Homologues:
Organism=Homo sapiens, GI9910460, Length=293, Percent_Identity=25.5972696245734, Blast_Score=90, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17556280, Length=285, Percent_Identity=25.6140350877193, Blast_Score=73, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6323383, Length=297, Percent_Identity=24.5791245791246, Blast_Score=81, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6322335, Length=215, Percent_Identity=25.1162790697674, Blast_Score=70, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000182 - InterPro: IPR016181 - InterPro: IPR003010 - InterPro: IPR001110 [H]
Pfam domain/function: PF00583 Acetyltransf_1; PF00795 CN_hydrolase [H]
EC number: NA
Molecular weight: Translated: 58515; Mature: 58515
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: PS50263 CN_HYDROLASE ; PS01227 UPF0012
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEANHVEVRHLTKQDMQELQNACADVYHIDKLNTWDEYAIDTLLSRFPDGQICVCVDGKV CCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCH VGCALSLIIDYAKFGDDHTYNEITSNMTFTKHDPDGDVLYGIEVFIHPDYRGLRLARRLY HHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHH VARKELCENLNLRSIMAGGRMPNYSKFADQFTAKQYITKVKEKEIYDPVLSFQLANDFFV HHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKLLKNYLAGDVESMEYATLLEWPNIYYTRSVKLINAPKTEVRIGLVQWQMRSMADLNDL HHHHHHHHCCCCCCCHHHHHCCCCCEEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHH YEQIEFFVDAVSDYESDFILFPELFNAPLMAQFHHLNIPETIRKLADYTIPIRDKFIEFA HHHHHHHHHHHHCCCCCEEECHHHHCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEE ITYNINIITGSMPYVVDDKLYNSGFLCRRDGTWERYDKLHVTPSEKRNWIMTGGDKIEVF EEEEEEEEECCCCEEECCCCCCCCEEEECCCCHHHHCEEECCCCCCCCEEEECCCEEEEE DTDCGKVGIMICYDVEFPEYVRLLADQGMNILFVPFLTDTQNGYTRVRHCAMARAIENEC ECCCCCEEEEEEEECCCHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCC YVAIAGAVGNLARVNNMDIQYAQSALFTPSDFAFPTTGIKAEATPNSEMSLIVDVNLDLL EEEEECCCCCHHHCCCCCHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEEEEEECCHHHH KALHNHGSVHAMKDRRHDLYSLKRIDKQ HHHHCCCCEEEHHHHHHHHHHHHHHCCC >Mature Secondary Structure MEANHVEVRHLTKQDMQELQNACADVYHIDKLNTWDEYAIDTLLSRFPDGQICVCVDGKV CCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCH VGCALSLIIDYAKFGDDHTYNEITSNMTFTKHDPDGDVLYGIEVFIHPDYRGLRLARRLY HHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHH VARKELCENLNLRSIMAGGRMPNYSKFADQFTAKQYITKVKEKEIYDPVLSFQLANDFFV HHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RKLLKNYLAGDVESMEYATLLEWPNIYYTRSVKLINAPKTEVRIGLVQWQMRSMADLNDL HHHHHHHHCCCCCCCHHHHHCCCCCEEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHH YEQIEFFVDAVSDYESDFILFPELFNAPLMAQFHHLNIPETIRKLADYTIPIRDKFIEFA HHHHHHHHHHHHCCCCCEEECHHHHCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEE ITYNINIITGSMPYVVDDKLYNSGFLCRRDGTWERYDKLHVTPSEKRNWIMTGGDKIEVF EEEEEEEEECCCCEEECCCCCCCCEEEECCCCHHHHCEEECCCCCCCCEEEECCCEEEEE DTDCGKVGIMICYDVEFPEYVRLLADQGMNILFVPFLTDTQNGYTRVRHCAMARAIENEC ECCCCCEEEEEEEECCCHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCC YVAIAGAVGNLARVNNMDIQYAQSALFTPSDFAFPTTGIKAEATPNSEMSLIVDVNLDLL EEEEECCCCCHHHCCCCCHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEEEEEECCHHHH KALHNHGSVHAMKDRRHDLYSLKRIDKQ HHHHCCCCEEEHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969498; 9384377 [H]