| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is 119945107
Identifier: 119945107
GI number: 119945107
Start: 1683549
End: 1684088
Strand: Direct
Name: 119945107
Synonym: Ping_1367
Alternate gene names: NA
Gene position: 1683549-1684088 (Clockwise)
Preceding gene: 119945106
Following gene: 119945108
Centisome position: 36.92
GC content: 40.19
Gene sequence:
>540_bases GTGCCGTTAGTCTTTTTTGCCAGAGTAGCTGACGTTTCTCTTGGGACATTTAGAACAATTGTTATTTTTCGTGGCCACAA ATTTCTGGCCTCCTTTATTGGTTTTTTTGAAATTATTATTTGGTTAGTTGCATCAGCCCAGGTTTTGACAAACCTTGATC AGTGGTATCTTGCATTAGCTTATGCCAGTGGTTTTTCCGTCGGTAACTATGCTGGCATTTCGATTGAAAATCGTTTTGCA ATTGGTAATGAACTGATACGTTGTATATCATTCAATCGCGATGTCCTAGCAGGAAAATTACGTGAGGAGGGATTTAAGGT GGTTTCATTCGATGGTGATATGGGGGAAGCTTATCCTGTTGAACTTCTGCTTGTTATTGAAAAAAGGCGTAATGTTCCTT CGCTCATCCAGTTAATTAAAGATCTTGATCCGACTGCCGTTTATTCCGTATCGGATGTGAAAAGCGTTTATGAGGGGCCA GATATTTTTCCTCGGCGTAGTCTATTGCATAGTACATTAATGCTTCTGGGAAAGCGTTGA
Upstream 100 bases:
>100_bases TGGCGGGTACTGTATCTATATCTGGCTAAGTTTTACGGTGTTCAGTGGTTAACAAGGAGTCGTCATTATCAACACATTAG TTGAATATCCGTATTTATTG
Downstream 100 bases:
>100_bases TAACAGAAAGGCTTTAAAATGAATACTAGTGATACAGAAAGTGATGTTTACACTTGATTATGAATTTGCTTCATCCCGTC CTGTTGTTCATTATGTTTGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MPLVFFARVADVSLGTFRTIVIFRGHKFLASFIGFFEIIIWLVASAQVLTNLDQWYLALAYASGFSVGNYAGISIENRFA IGNELIRCISFNRDVLAGKLREEGFKVVSFDGDMGEAYPVELLLVIEKRRNVPSLIQLIKDLDPTAVYSVSDVKSVYEGP DIFPRRSLLHSTLMLLGKR
Sequences:
>Translated_179_residues MPLVFFARVADVSLGTFRTIVIFRGHKFLASFIGFFEIIIWLVASAQVLTNLDQWYLALAYASGFSVGNYAGISIENRFA IGNELIRCISFNRDVLAGKLREEGFKVVSFDGDMGEAYPVELLLVIEKRRNVPSLIQLIKDLDPTAVYSVSDVKSVYEGP DIFPRRSLLHSTLMLLGKR >Mature_178_residues PLVFFARVADVSLGTFRTIVIFRGHKFLASFIGFFEIIIWLVASAQVLTNLDQWYLALAYASGFSVGNYAGISIENRFAI GNELIRCISFNRDVLAGKLREEGFKVVSFDGDMGEAYPVELLLVIEKRRNVPSLIQLIKDLDPTAVYSVSDVKSVYEGPD IFPRRSLLHSTLMLLGKR
Specific function: Unknown
COG id: COG4843
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential)
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0316 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1367_PSYIN (A1SUM3)
Other databases:
- EMBL: CP000510 - RefSeq: YP_942787.1 - STRING: A1SUM3 - GeneID: 4624060 - GenomeReviews: CP000510_GR - KEGG: pin:Ping_1367 - eggNOG: COG4843 - HOGENOM: HBG542119 - OMA: RTIVIFR - ProtClustDB: PRK04164 - BioCyc: PING357804:PING_1367-MONOMER - HAMAP: MF_01515 - InterPro: IPR019264 - InterPro: IPR022930
Pfam domain/function: PF10035 DUF2179
EC number: NA
Molecular weight: Translated: 20085; Mature: 19954
Theoretical pI: Translated: 8.43; Mature: 8.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0x14ca2234)-; HASH(0x17cecad4)-;
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLVFFARVADVSLGTFRTIVIFRGHKFLASFIGFFEIIIWLVASAQVLTNLDQWYLALA CCEEEEEHHHHCCCCHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YASGFSVGNYAGISIENRFAIGNELIRCISFNRDVLAGKLREEGFKVVSFDGDMGEAYPV HHCCCCCCCEECCEECCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECCCCCCCCHH ELLLVIEKRRNVPSLIQLIKDLDPTAVYSVSDVKSVYEGPDIFPRRSLLHSTLMLLGKR HHEEEEHHCCCCHHHHHHHHCCCCHHEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHCCH >Mature Secondary Structure PLVFFARVADVSLGTFRTIVIFRGHKFLASFIGFFEIIIWLVASAQVLTNLDQWYLALA CEEEEEHHHHCCCCHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YASGFSVGNYAGISIENRFAIGNELIRCISFNRDVLAGKLREEGFKVVSFDGDMGEAYPV HHCCCCCCCEECCEECCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECCCCCCCCHH ELLLVIEKRRNVPSLIQLIKDLDPTAVYSVSDVKSVYEGPDIFPRRSLLHSTLMLLGKR HHEEEEHHCCCCHHHHHHHHCCCCHHEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHCCH
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA