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The map label for this gene is nifU [H]

Identifier: 119945069

GI number: 119945069

Start: 1644428

End: 1644814

Strand: Direct

Name: nifU [H]

Synonym: Ping_1325

Alternate gene names: 119945069

Gene position: 1644428-1644814 (Clockwise)

Preceding gene: 119945068

Following gene: 119945070

Centisome position: 36.07

GC content: 39.79

Gene sequence:

>387_bases
ATGGCTTACAGCGAAAAAGTAATAGATCATTATGAAAACCCACGTAACGTTGGTTCATTTGACAAAGATGATCTAAGTGT
TGCAACTGGTATGGTGGGTGCACCTGCTTGTGGTGATGTAATGAAACTGCAACTTAAAATTGGTGAGAACGGTCTGATTG
AAGATGCAAAATTCAAAACATACGGTTGCGGTAGCGCAATAGCATCAAGCTCTTTAGTGACTGAATGGGTAAAAGGTAAA
ACGCTAGAACAAGCGGGTACTATTTCTAACACTCAAATCTCAGCAGAGCTTGCTTTACCGCCAGTAAAAATTCACTGTTC
TATTCTTGCGGAAGATGCGATTAAAGCGGCAATTACTGATTATAAAAGTAAACACCCGAACGCATAA

Upstream 100 bases:

>100_bases
ACAAGGCTGATAAAAGCAGCATTGTATTTTTATCAAAGAGAACGAACACTAAATTACATTCACAAACGATTTTAGATAAA
AGACTAAAAGGATATATATC

Downstream 100 bases:

>100_bases
AAGCGGTTTGGCAGGTATCATCTTGATGATATTTGCCAATATTGAATATTTGAATTAATAACTGGAGTCAATTTTGGCTA
TCACAATGACAGAACCAGCT

Product: scaffold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MAYSEKVIDHYENPRNVGSFDKDDLSVATGMVGAPACGDVMKLQLKIGENGLIEDAKFKTYGCGSAIASSSLVTEWVKGK
TLEQAGTISNTQISAELALPPVKIHCSILAEDAIKAAITDYKSKHPNA

Sequences:

>Translated_128_residues
MAYSEKVIDHYENPRNVGSFDKDDLSVATGMVGAPACGDVMKLQLKIGENGLIEDAKFKTYGCGSAIASSSLVTEWVKGK
TLEQAGTISNTQISAELALPPVKIHCSILAEDAIKAAITDYKSKHPNA
>Mature_127_residues
AYSEKVIDHYENPRNVGSFDKDDLSVATGMVGAPACGDVMKLQLKIGENGLIEDAKFKTYGCGSAIASSSLVTEWVKGKT
LEQAGTISNTQISAELALPPVKIHCSILAEDAIKAAITDYKSKHPNA

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=123, Percent_Identity=72.3577235772358, Blast_Score=193, Evalue=3e-50,
Organism=Homo sapiens, GI24307953, Length=122, Percent_Identity=72.1311475409836, Blast_Score=189, Evalue=6e-49,
Organism=Escherichia coli, GI1788878, Length=125, Percent_Identity=80, Blast_Score=214, Evalue=1e-57,
Organism=Caenorhabditis elegans, GI17543474, Length=123, Percent_Identity=69.1056910569106, Blast_Score=188, Evalue=6e-49,
Organism=Saccharomyces cerevisiae, GI6325122, Length=124, Percent_Identity=67.741935483871, Blast_Score=177, Evalue=3e-46,
Organism=Saccharomyces cerevisiae, GI6324800, Length=123, Percent_Identity=66.6666666666667, Blast_Score=174, Evalue=3e-45,
Organism=Drosophila melanogaster, GI21355597, Length=123, Percent_Identity=72.3577235772358, Blast_Score=198, Evalue=7e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 13600; Mature: 13468

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSEKVIDHYENPRNVGSFDKDDLSVATGMVGAPACGDVMKLQLKIGENGLIEDAKFKT
CCCCHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
YGCGSAIASSSLVTEWVKGKTLEQAGTISNTQISAELALPPVKIHCSILAEDAIKAAITD
CCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCEEEEEECCCCEEEEEEHHHHHHHHHHHHH
YKSKHPNA
HCCCCCCC
>Mature Secondary Structure 
AYSEKVIDHYENPRNVGSFDKDDLSVATGMVGAPACGDVMKLQLKIGENGLIEDAKFKT
CCCHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
YGCGSAIASSSLVTEWVKGKTLEQAGTISNTQISAELALPPVKIHCSILAEDAIKAAITD
CCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCEEEEEECCCCEEEEEEHHHHHHHHHHHHH
YKSKHPNA
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]