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The map label for this gene is yciR [C]

Identifier: 119945051

GI number: 119945051

Start: 1620691

End: 1622289

Strand: Reverse

Name: yciR [C]

Synonym: Ping_1306

Alternate gene names: 119945051

Gene position: 1622289-1620691 (Counterclockwise)

Preceding gene: 119945052

Following gene: 119945042

Centisome position: 35.58

GC content: 48.41

Gene sequence:

>1599_bases
ATGGTTGAAGAAACGAAAATCAATAATGAAAATCCTGACTGGTCCGCCAATCAAGCTTTATTGAATAACACTGGGATTCC
AGCTTCTTCGACACGGATTCATTGGTTTAGTCACCTGGTCGAATCTCCCTTCCTGTTTCCGGCGATTGCCGTTCTCATGC
TGGCCGCAATCTGGAAGACAATCCTGAACCTTATCAACATCGAACAAACCGCGGCAGAGCAAACCGCGACGGCATTAAGC
CATGAACTGGCCGACACTTATGAATCGCAGGTCGTGCGCTCACTGCGCGAAATCGACCAGACTCTGAAGGTCGTCAAATA
TGCGAATAATATCCTGAGCATACAGGACGTACTGCCAACGTTGAAAGCCAGAAATCTATTACCGCCTACGCTGGTGTTCG
ACATCAGTATTGTGGACAGCAGGGGTGACATTGTGACCAGTACGAATCTCTCGGACAATGCCAATGTTGCCGACCTTTCT
TTCTTCCAGAGCCAGCTCCAGAGGGATGCTATCTCTGTTGGTAGTCCGGAACTTGACCCGAGCACCGGAAAGTGGAACCT
GACATTTAGCCGCAGACTTGATTTTGTCAATGGAAAGTTTGCCGGTATTGTAATGGTCTCGGTCGACGCGGCCTATTTTG
TTAGCAGCTATGAATACTCGAAACTGGGAGAGCATGGCATGCTTGGCATTATCTGCGAGGACGGCATATTCCTTGTCAGG
CGCAGTGGGGAAACAATTACTGCCAGCGATAAGTCTAATTTAAAAGCGCTGAAAACATATTCTGCGGTGGAAATGAAAAG
CGAAACCATGCTTCAGACCAACGTCTGGGATGGCGTGCAGCGCTACACCAGTGCACACAAGCTCTATGGTTTCCCCCTGA
CGGTGATTGTTGGATTATCCGCAGACGAAAAATTGGCCGCTGCTCAACAGAAGAAGCAAGTCTATCTGTGGCAGGCGGTA
GCCAGCAGCTTTGTCATCTTCCTGATTATCGCGGTGATGTGGCGCATGAGCTATCAGCTTACCTTAAGCCGCCAGCGCAT
CATAGAGGAACATATCACCCATGCCGCAAGAGTCGAATACCTTGCCTATCATGACAGTCTCACGACGCTACCGAACCGCA
GTCTGTTCAGTAAACTGCTGAGTCATAGTATCAAACAGGCAGATCGCCACAATGGACTGCTGGCATTGCTATTTCTCGAC
TTGGACCATTTTAAAAATATTAACGACACCCTTGGACACCAGGCTGGCGACCAATTGCTGCAGGAAATCGCAGCAAGGCT
CAAGAAATGTCTGCGCGAAAGTGACACTATTGCCCGGCTAGGGGGTGACGAATTTGTTATCATGCTGCCTGAACTGGATA
ACGAAAAATATACAGTAACAGTGGCCAAAAAAATTATTTCCGCTGTCGCCAGACCATTTACTCTGGCCGGTCAGGAGTGC
CGCATCACAGCAAGTATCGGGATCAGTACCTATCCAAAAAACGGTCTGAACGAACAGATTCTGACCAAAAACGCGGATGT
CGCGATGTACAAGGCGAAGGAGAAAGGCAAGAACAACTTCCAGTTCTATTCTAATAAACTGAACGACAATCCACTCTAA

Upstream 100 bases:

>100_bases
AAATATTATGTTAATAAAAGCGCACATTATCGCCAAATATGACAGGGTCTTTGTATGATTGCTCTTTTTAAACATTAAAT
ACACGGGAGAAACATACTCA

Downstream 100 bases:

>100_bases
CGGCTTAATCCGCTAAGCATGCGTTGAAGAGAAATCAATTTTGTCTTTATAGCAATAGTCAATTGGATACTCAAGATTGC
CTGCTTGGGAAAATCAGGGT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MVEETKINNENPDWSANQALLNNTGIPASSTRIHWFSHLVESPFLFPAIAVLMLAAIWKTILNLINIEQTAAEQTATALS
HELADTYESQVVRSLREIDQTLKVVKYANNILSIQDVLPTLKARNLLPPTLVFDISIVDSRGDIVTSTNLSDNANVADLS
FFQSQLQRDAISVGSPELDPSTGKWNLTFSRRLDFVNGKFAGIVMVSVDAAYFVSSYEYSKLGEHGMLGIICEDGIFLVR
RSGETITASDKSNLKALKTYSAVEMKSETMLQTNVWDGVQRYTSAHKLYGFPLTVIVGLSADEKLAAAQQKKQVYLWQAV
ASSFVIFLIIAVMWRMSYQLTLSRQRIIEEHITHAARVEYLAYHDSLTTLPNRSLFSKLLSHSIKQADRHNGLLALLFLD
LDHFKNINDTLGHQAGDQLLQEIAARLKKCLRESDTIARLGGDEFVIMLPELDNEKYTVTVAKKIISAVARPFTLAGQEC
RITASIGISTYPKNGLNEQILTKNADVAMYKAKEKGKNNFQFYSNKLNDNPL

Sequences:

>Translated_532_residues
MVEETKINNENPDWSANQALLNNTGIPASSTRIHWFSHLVESPFLFPAIAVLMLAAIWKTILNLINIEQTAAEQTATALS
HELADTYESQVVRSLREIDQTLKVVKYANNILSIQDVLPTLKARNLLPPTLVFDISIVDSRGDIVTSTNLSDNANVADLS
FFQSQLQRDAISVGSPELDPSTGKWNLTFSRRLDFVNGKFAGIVMVSVDAAYFVSSYEYSKLGEHGMLGIICEDGIFLVR
RSGETITASDKSNLKALKTYSAVEMKSETMLQTNVWDGVQRYTSAHKLYGFPLTVIVGLSADEKLAAAQQKKQVYLWQAV
ASSFVIFLIIAVMWRMSYQLTLSRQRIIEEHITHAARVEYLAYHDSLTTLPNRSLFSKLLSHSIKQADRHNGLLALLFLD
LDHFKNINDTLGHQAGDQLLQEIAARLKKCLRESDTIARLGGDEFVIMLPELDNEKYTVTVAKKIISAVARPFTLAGQEC
RITASIGISTYPKNGLNEQILTKNADVAMYKAKEKGKNNFQFYSNKLNDNPL
>Mature_532_residues
MVEETKINNENPDWSANQALLNNTGIPASSTRIHWFSHLVESPFLFPAIAVLMLAAIWKTILNLINIEQTAAEQTATALS
HELADTYESQVVRSLREIDQTLKVVKYANNILSIQDVLPTLKARNLLPPTLVFDISIVDSRGDIVTSTNLSDNANVADLS
FFQSQLQRDAISVGSPELDPSTGKWNLTFSRRLDFVNGKFAGIVMVSVDAAYFVSSYEYSKLGEHGMLGIICEDGIFLVR
RSGETITASDKSNLKALKTYSAVEMKSETMLQTNVWDGVQRYTSAHKLYGFPLTVIVGLSADEKLAAAQQKKQVYLWQAV
ASSFVIFLIIAVMWRMSYQLTLSRQRIIEEHITHAARVEYLAYHDSLTTLPNRSLFSKLLSHSIKQADRHNGLLALLFLD
LDHFKNINDTLGHQAGDQLLQEIAARLKKCLRESDTIARLGGDEFVIMLPELDNEKYTVTVAKKIISAVARPFTLAGQEC
RITASIGISTYPKNGLNEQILTKNADVAMYKAKEKGKNNFQFYSNKLNDNPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=181, Percent_Identity=34.8066298342541, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788381, Length=168, Percent_Identity=39.8809523809524, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1787262, Length=184, Percent_Identity=34.2391304347826, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=35.1515151515151, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87081881, Length=292, Percent_Identity=30.1369863013699, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=34.2857142857143, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87082007, Length=178, Percent_Identity=33.7078651685393, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=32.0754716981132, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788956, Length=155, Percent_Identity=37.4193548387097, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI1787802, Length=169, Percent_Identity=33.1360946745562, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI87081977, Length=187, Percent_Identity=32.0855614973262, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI87081974, Length=133, Percent_Identity=33.0827067669173, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081921, Length=173, Percent_Identity=28.3236994219653, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=26.9461077844311, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 59400; Mature: 59400

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEETKINNENPDWSANQALLNNTGIPASSTRIHWFSHLVESPFLFPAIAVLMLAAIWKT
CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ILNLINIEQTAAEQTATALSHELADTYESQVVRSLREIDQTLKVVKYANNILSIQDVLPT
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKARNLLPPTLVFDISIVDSRGDIVTSTNLSDNANVADLSFFQSQLQRDAISVGSPELDP
HHHCCCCCCEEEEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
STGKWNLTFSRRLDFVNGKFAGIVMVSVDAAYFVSSYEYSKLGEHGMLGIICEDGIFLVR
CCCEEEEEHHHCCCCCCCCEEEEEEEEECHHHHHHCCCHHHCCCCCCEEEEECCCEEEEE
RSGETITASDKSNLKALKTYSAVEMKSETMLQTNVWDGVQRYTSAHKLYGFPLTVIVGLS
ECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
ADEKLAAAQQKKQVYLWQAVASSFVIFLIIAVMWRMSYQLTLSRQRIIEEHITHAARVEY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAYHDSLTTLPNRSLFSKLLSHSIKQADRHNGLLALLFLDLDHFKNINDTLGHQAGDQLL
HHCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHCCCHHHHCHHHHHHHH
QEIAARLKKCLRESDTIARLGGDEFVIMLPELDNEKYTVTVAKKIISAVARPFTLAGQEC
HHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCEEEHHHHHHHHHHCCCCEECCCCE
RITASIGISTYPKNGLNEQILTKNADVAMYKAKEKGKNNFQFYSNKLNDNPL
EEEEECCCCCCCCCCCCHHHHCCCCCEEEEECHHCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure
MVEETKINNENPDWSANQALLNNTGIPASSTRIHWFSHLVESPFLFPAIAVLMLAAIWKT
CCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ILNLINIEQTAAEQTATALSHELADTYESQVVRSLREIDQTLKVVKYANNILSIQDVLPT
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKARNLLPPTLVFDISIVDSRGDIVTSTNLSDNANVADLSFFQSQLQRDAISVGSPELDP
HHHCCCCCCEEEEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
STGKWNLTFSRRLDFVNGKFAGIVMVSVDAAYFVSSYEYSKLGEHGMLGIICEDGIFLVR
CCCEEEEEHHHCCCCCCCCEEEEEEEEECHHHHHHCCCHHHCCCCCCEEEEECCCEEEEE
RSGETITASDKSNLKALKTYSAVEMKSETMLQTNVWDGVQRYTSAHKLYGFPLTVIVGLS
ECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
ADEKLAAAQQKKQVYLWQAVASSFVIFLIIAVMWRMSYQLTLSRQRIIEEHITHAARVEY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAYHDSLTTLPNRSLFSKLLSHSIKQADRHNGLLALLFLDLDHFKNINDTLGHQAGDQLL
HHCCCCHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHCCCHHHHCHHHHHHHH
QEIAARLKKCLRESDTIARLGGDEFVIMLPELDNEKYTVTVAKKIISAVARPFTLAGQEC
HHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCEEEHHHHHHHHHHCCCCEECCCCE
RITASIGISTYPKNGLNEQILTKNADVAMYKAKEKGKNNFQFYSNKLNDNPL
EEEEECCCCCCCCCCCCHHHHCCCCCEEEEECHHCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]