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The map label for this gene is ydcP [H]

Identifier: 119945047

GI number: 119945047

Start: 1608830

End: 1611076

Strand: Direct

Name: ydcP [H]

Synonym: Ping_1301

Alternate gene names: 119945047

Gene position: 1608830-1611076 (Clockwise)

Preceding gene: 119945046

Following gene: 119945048

Centisome position: 35.28

GC content: 39.65

Gene sequence:

>2247_bases
GTGACCCAACAAAAAATTGAATTATTGGCCCCCGGTGGTGATGTAGACGCGATTAAAGCCGCTATTTTGGCCGGTGCAAA
TGCCGTCTATTGCGGCTTAGATACTTTTAATGCGCGCAACCGCGCAGCCAATCTTTCATTTGATGAATTAGTCGGTGTGA
TAGGGCTTGCCCATCAATACGAGTGTGAAGTTTTTTTAACCTTAAATATTGTTATTTTAGAGCATGAAATAGCCGGTATC
GTTAAATTACTTAACCAATTAGTGAATACCGATGTAGATGGCATTATTGTTCAGGATTTAGGGGTGTTTAATCTGGTCAA
GAAACATTTTCCCAGCCTTAAGATACATGCATCAACGCAGTTGACTACCCATAATGAGGGGCAAATATTATTCCTCTCCA
AAATAGGCGCAACAAGAGCGAATTTGTCACGCGAATTGAATCTTGGCGAGATAAAAAGTTTAACCACAGTCGCCCATGAG
AACGCCGTGCTGACTGAAGTCTTTGTACACGGCGCGTTATGTATTGCATTCTCCGGGCAATGTTATTCAAGCTCCGTTAG
TGTGGGTAATTCTGGTAATCGTGGTCGCTGCAGTCAGGCATGCCGGGATGAGTATGAAGTCACTGCTGCGGGTAATAAAT
TCCCACTTAATTTAAAAGATAATTCAGCTTATTTTGATCTCCCTGAATTGGTTGATGCAGGGGTTGATTCCTTAAAGATT
GAAGGGCGTATTAAAGGGGCTCAGTATGTGCATACCGTGGTTGATACCTGGCGCCAGCAGATTGACGCGTTTGTAAAAAG
CGGTAAACTATTAGACGATGATTCAAGTCTGTATAAAGTCTTTAACCGTGATTTTACCAACTCGTTTTTAAAAGGTAACC
TCACTAAAGATATGTTTATCGATAATCCCCGCGATAATAGTTTTCAGCATGCTAATGATCAAAATAATGCGATATCGGTA
GTACAAATCCAAGAGGTTCAACAAACACTTTCCACGGAAAAAAATGAAATAGGCAGCTTGGTTGCCGAAAAAATAAAACA
TCTCACTATTGCCAAAACAGCCCTTTCAATGGCTTTTTCAGCAAAACTGAATAAGCCCTTGGTGGTCACCGTTAAGCGTG
ATGATAAAATGTTTTTGGTTGAGTCTGAAATGCAATTAATAGCGGCAGACCAATCCCCTGTTGATCAGGTAGCTATCGAA
AAACGCTTTAAAAGTTTTAAAAATAGTGAATATAATCTTCAAGACTTTGATTTTGATGATTTTGATTCAGGTTTAAGCCT
TCCTTTTAAAGAACTCACTAAGATAAAAAATAAAGTGGCTTTTTTATTAAATGATTCAATTGCAATTATCCCGCCAGTGA
CCTTGCCGGCACTTAAAAAGCATCCTAAAAAAGAGGGCAAACCGACCTTATCAATACTAATAAGTAATGAGAAGGATCTG
CACCTTTGTGATGTGACCGACGCTGATATCTACTTTAAATTACCGGAAAGCTTTAAAAAGAATTGCACTAAGTTTATTAA
ACTCTTTTTACAAAACCCGAGACTCATTCCCTGGTTTCCGGCAGTATTAATAGGTAAAGATTATCTGGAAGCGGTGAAGA
TTTTAGAGCAGGTAAAACCTCAACGTATTGTGACGAATAATACCGGTGTTGCCTATCAGGCAAATGCGCTGAATATTGAG
TGGATAGCGGGGCCTTTTTTAAATACGACCAATTCTTATGCTCTATTGACGCTGCAGGAAGATCTTAATTGTTCAGGTGC
GTTTATTTCTAACGAAATTAATCGTAATCAAATTAAAAATATCGCCCGCCCTGAAAACTTTAAACTGTTATACAGTATCT
ATCATCCGATTTTGATGATGACCAGCCGGCAGTGTTTCTTTCAGCAAACCGTAGGCTGTAATAAACCCGCCATTGAAGAC
GGCTGTATGCTCAAATGTGAAAAAGCGACAACCATCACCAATGTAAAAGGATTCTCTTTTGCTGTTGATAAACAGAAGGG
CGGATACCCGAGTATTTACAATGATGAACAATTCTTAAATTTTGATGTTGTGAGCGATTTTTCCGATTTATTCGATGAGT
TTTTTATAGACTTAACCGATATTGGTGCAGGCTCAAAAGCGCAGCAGGATAAGGTCGCTTTAATTGGACATTTTGAAAAT
CTGCTGGCAGGGGTAGAAGAAGCGCAAGATCAACTTGACCAGAGGGTGACGGTTTCAACCAATGCGCAGTACAGGCAGGG
GTTATAA

Upstream 100 bases:

>100_bases
TAAGCTTGCTAGAGCGACTAAAGCCGAATTAATAGCAATGCATACTCTATGCAGGTAGAATCGCCACCAAAATATAAGCA
ACTATTGAGAGAGTGATTTC

Downstream 100 bases:

>100_bases
AATAATAGCAAACGCATTTAAGATGTGAGCTTGCATAACATTAAACCAGCGAAAGCTGGTTTTTTTATATCTTAATTTTG
CGAAGGCACAGTGTAGAAAA

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 748; Mature: 747

Protein sequence:

>748_residues
MTQQKIELLAPGGDVDAIKAAILAGANAVYCGLDTFNARNRAANLSFDELVGVIGLAHQYECEVFLTLNIVILEHEIAGI
VKLLNQLVNTDVDGIIVQDLGVFNLVKKHFPSLKIHASTQLTTHNEGQILFLSKIGATRANLSRELNLGEIKSLTTVAHE
NAVLTEVFVHGALCIAFSGQCYSSSVSVGNSGNRGRCSQACRDEYEVTAAGNKFPLNLKDNSAYFDLPELVDAGVDSLKI
EGRIKGAQYVHTVVDTWRQQIDAFVKSGKLLDDDSSLYKVFNRDFTNSFLKGNLTKDMFIDNPRDNSFQHANDQNNAISV
VQIQEVQQTLSTEKNEIGSLVAEKIKHLTIAKTALSMAFSAKLNKPLVVTVKRDDKMFLVESEMQLIAADQSPVDQVAIE
KRFKSFKNSEYNLQDFDFDDFDSGLSLPFKELTKIKNKVAFLLNDSIAIIPPVTLPALKKHPKKEGKPTLSILISNEKDL
HLCDVTDADIYFKLPESFKKNCTKFIKLFLQNPRLIPWFPAVLIGKDYLEAVKILEQVKPQRIVTNNTGVAYQANALNIE
WIAGPFLNTTNSYALLTLQEDLNCSGAFISNEINRNQIKNIARPENFKLLYSIYHPILMMTSRQCFFQQTVGCNKPAIED
GCMLKCEKATTITNVKGFSFAVDKQKGGYPSIYNDEQFLNFDVVSDFSDLFDEFFIDLTDIGAGSKAQQDKVALIGHFEN
LLAGVEEAQDQLDQRVTVSTNAQYRQGL

Sequences:

>Translated_748_residues
MTQQKIELLAPGGDVDAIKAAILAGANAVYCGLDTFNARNRAANLSFDELVGVIGLAHQYECEVFLTLNIVILEHEIAGI
VKLLNQLVNTDVDGIIVQDLGVFNLVKKHFPSLKIHASTQLTTHNEGQILFLSKIGATRANLSRELNLGEIKSLTTVAHE
NAVLTEVFVHGALCIAFSGQCYSSSVSVGNSGNRGRCSQACRDEYEVTAAGNKFPLNLKDNSAYFDLPELVDAGVDSLKI
EGRIKGAQYVHTVVDTWRQQIDAFVKSGKLLDDDSSLYKVFNRDFTNSFLKGNLTKDMFIDNPRDNSFQHANDQNNAISV
VQIQEVQQTLSTEKNEIGSLVAEKIKHLTIAKTALSMAFSAKLNKPLVVTVKRDDKMFLVESEMQLIAADQSPVDQVAIE
KRFKSFKNSEYNLQDFDFDDFDSGLSLPFKELTKIKNKVAFLLNDSIAIIPPVTLPALKKHPKKEGKPTLSILISNEKDL
HLCDVTDADIYFKLPESFKKNCTKFIKLFLQNPRLIPWFPAVLIGKDYLEAVKILEQVKPQRIVTNNTGVAYQANALNIE
WIAGPFLNTTNSYALLTLQEDLNCSGAFISNEINRNQIKNIARPENFKLLYSIYHPILMMTSRQCFFQQTVGCNKPAIED
GCMLKCEKATTITNVKGFSFAVDKQKGGYPSIYNDEQFLNFDVVSDFSDLFDEFFIDLTDIGAGSKAQQDKVALIGHFEN
LLAGVEEAQDQLDQRVTVSTNAQYRQGL
>Mature_747_residues
TQQKIELLAPGGDVDAIKAAILAGANAVYCGLDTFNARNRAANLSFDELVGVIGLAHQYECEVFLTLNIVILEHEIAGIV
KLLNQLVNTDVDGIIVQDLGVFNLVKKHFPSLKIHASTQLTTHNEGQILFLSKIGATRANLSRELNLGEIKSLTTVAHEN
AVLTEVFVHGALCIAFSGQCYSSSVSVGNSGNRGRCSQACRDEYEVTAAGNKFPLNLKDNSAYFDLPELVDAGVDSLKIE
GRIKGAQYVHTVVDTWRQQIDAFVKSGKLLDDDSSLYKVFNRDFTNSFLKGNLTKDMFIDNPRDNSFQHANDQNNAISVV
QIQEVQQTLSTEKNEIGSLVAEKIKHLTIAKTALSMAFSAKLNKPLVVTVKRDDKMFLVESEMQLIAADQSPVDQVAIEK
RFKSFKNSEYNLQDFDFDDFDSGLSLPFKELTKIKNKVAFLLNDSIAIIPPVTLPALKKHPKKEGKPTLSILISNEKDLH
LCDVTDADIYFKLPESFKKNCTKFIKLFLQNPRLIPWFPAVLIGKDYLEAVKILEQVKPQRIVTNNTGVAYQANALNIEW
IAGPFLNTTNSYALLTLQEDLNCSGAFISNEINRNQIKNIARPENFKLLYSIYHPILMMTSRQCFFQQTVGCNKPAIEDG
CMLKCEKATTITNVKGFSFAVDKQKGGYPSIYNDEQFLNFDVVSDFSDLFDEFFIDLTDIGAGSKAQQDKVALIGHFENL
LAGVEEAQDQLDQRVTVSTNAQYRQGL

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=321, Percent_Identity=37.3831775700935, Blast_Score=201, Evalue=1e-52,
Organism=Escherichia coli, GI1788397, Length=347, Percent_Identity=29.1066282420749, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1789548, Length=296, Percent_Identity=31.4189189189189, Blast_Score=121, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 83195; Mature: 83064

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQQKIELLAPGGDVDAIKAAILAGANAVYCGLDTFNARNRAANLSFDELVGVIGLAHQY
CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEE
ECEVFLTLNIVILEHEIAGIVKLLNQLVNTDVDGIIVQDLGVFNLVKKHFPSLKIHASTQ
CEEEEEEEEEEEEEHHHHHHHHHHHHHHCCCCCEEEEHHCCHHHHHHHHCCCEEEEEEEE
LTTHNEGQILFLSKIGATRANLSRELNLGEIKSLTTVAHENAVLTEVFVHGALCIAFSGQ
EEECCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCEEEEEECCC
CYSSSVSVGNSGNRGRCSQACRDEYEVTAAGNKFPLNLKDNSAYFDLPELVDAGVDSLKI
CCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCEEEEEECCCCCEECCHHHHHCCCCCEEE
EGRIKGAQYVHTVVDTWRQQIDAFVKSGKLLDDDSSLYKVFNRDFTNSFLKGNLTKDMFI
EEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHEE
DNPRDNSFQHANDQNNAISVVQIQEVQQTLSTEKNEIGSLVAEKIKHLTIAKTALSMAFS
CCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKLNKPLVVTVKRDDKMFLVESEMQLIAADQSPVDQVAIEKRFKSFKNSEYNLQDFDFDD
HCCCCCEEEEEECCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
FDSGLSLPFKELTKIKNKVAFLLNDSIAIIPPVTLPALKKHPKKEGKPTLSILISNEKDL
CCCCCCCCHHHHHHHHHHEEEEECCCEEEECCCCCHHHHCCCCCCCCCEEEEEEECCCCE
HLCDVTDADIYFKLPESFKKNCTKFIKLFLQNPRLIPWFPAVLIGKDYLEAVKILEQVKP
EEEECCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
QRIVTNNTGVAYQANALNIEWIAGPFLNTTNSYALLTLQEDLNCSGAFISNEINRNQIKN
CEEEECCCCCEEEECCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHH
IARPENFKLLYSIYHPILMMTSRQCFFQQTVGCNKPAIEDGCMLKCEKATTITNVKGFSF
CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEECCCCEE
AVDKQKGGYPSIYNDEQFLNFDVVSDFSDLFDEFFIDLTDIGAGSKAQQDKVALIGHFEN
EEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHEEHCCCCCCCCCCCCCEEEHHHHHH
LLAGVEEAQDQLDQRVTVSTNAQYRQGL
HHHHHHHHHHHHHCEEEEECCCHHHCCC
>Mature Secondary Structure 
TQQKIELLAPGGDVDAIKAAILAGANAVYCGLDTFNARNRAANLSFDELVGVIGLAHQY
CCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCEE
ECEVFLTLNIVILEHEIAGIVKLLNQLVNTDVDGIIVQDLGVFNLVKKHFPSLKIHASTQ
CEEEEEEEEEEEEEHHHHHHHHHHHHHHCCCCCEEEEHHCCHHHHHHHHCCCEEEEEEEE
LTTHNEGQILFLSKIGATRANLSRELNLGEIKSLTTVAHENAVLTEVFVHGALCIAFSGQ
EEECCCCCEEEEEECCCCHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCEEEEEECCC
CYSSSVSVGNSGNRGRCSQACRDEYEVTAAGNKFPLNLKDNSAYFDLPELVDAGVDSLKI
CCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCEEEEEECCCCCEECCHHHHHCCCCCEEE
EGRIKGAQYVHTVVDTWRQQIDAFVKSGKLLDDDSSLYKVFNRDFTNSFLKGNLTKDMFI
EEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHEE
DNPRDNSFQHANDQNNAISVVQIQEVQQTLSTEKNEIGSLVAEKIKHLTIAKTALSMAFS
CCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKLNKPLVVTVKRDDKMFLVESEMQLIAADQSPVDQVAIEKRFKSFKNSEYNLQDFDFDD
HCCCCCEEEEEECCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
FDSGLSLPFKELTKIKNKVAFLLNDSIAIIPPVTLPALKKHPKKEGKPTLSILISNEKDL
CCCCCCCCHHHHHHHHHHEEEEECCCEEEECCCCCHHHHCCCCCCCCCEEEEEEECCCCE
HLCDVTDADIYFKLPESFKKNCTKFIKLFLQNPRLIPWFPAVLIGKDYLEAVKILEQVKP
EEEECCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
QRIVTNNTGVAYQANALNIEWIAGPFLNTTNSYALLTLQEDLNCSGAFISNEINRNQIKN
CEEEECCCCCEEEECCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHH
IARPENFKLLYSIYHPILMMTSRQCFFQQTVGCNKPAIEDGCMLKCEKATTITNVKGFSF
CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEECCCCEE
AVDKQKGGYPSIYNDEQFLNFDVVSDFSDLFDEFFIDLTDIGAGSKAQQDKVALIGHFEN
EEECCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHEEHCCCCCCCCCCCCCEEEHHHHHH
LLAGVEEAQDQLDQRVTVSTNAQYRQGL
HHHHHHHHHHHHHCEEEEECCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]