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The map label for this gene is ydaM [C]

Identifier: 119944956

GI number: 119944956

Start: 1508554

End: 1509477

Strand: Reverse

Name: ydaM [C]

Synonym: Ping_1205

Alternate gene names: 119944956

Gene position: 1509477-1508554 (Counterclockwise)

Preceding gene: 119944957

Following gene: 119944948

Centisome position: 33.11

GC content: 41.77

Gene sequence:

>924_bases
ATGATTAAAAAACTGGACCTACTGCAAGGTAATATCGATATGGAAACCCTTTTCGAATCTATGCCTGTTGCAATGGCTTT
AACCGACAGAGAAGGCCGTTTGCTCCTGGTCAACCATAAAATGGCATTGCTAAGTGGACAGAATCTAAGTGACCTCATTG
GACGCAAAGTTGAAGAGGTAAGTAAAGAAGCCGCAGAGAATATAAAATATGAGTTTCGTATGTTCGATGCAGGATTAGAT
GTGCCTAATCGAGAATTAAAAATAGGGGACAAAATATGCTACACATCAGTTAAACCCGTTCGTGACAATGATGGATTAGC
TGTTGGTGTAATGGCTGCTTTGACCGATATCACTAAACAAAAAAAGATTGAACGACAGCTTGCCGAAGCTAACAAACAAT
TAAAATTGTTGGCAGATCATGACTCCTTAACCAATTTATTAAATGCCCGCGCTTATTATGAAGTCTGTGAGCGAATGATG
AGCATCGCACTTCGCCACAATAAACCATTCTCGGTTCTTTTTGTTGATCTTGACCACTTTAAAAAAATTAATGACACACA
CGGACACCATGTCGGCGATCTCCTTCTCAAGGCGGTCTCAGCCTGCATATTAGAAACTTGCAGAGACAGTGACCTTATCG
GTAGAGTTGGTGGTGAAGAGTTTTCTCTCTTTCTACCAGAAACAGGCATGTCAGGCGCGATGATTTTTGCGGAAAAATTG
CGTTCCAATATCGAGCAGTTGCTCCACCCAGTCGGCACAGATAAAAATATAGGTATTACAGCCAGCATTGGGGTTGCATC
AAAATTGATACATCACAAAGCGATCGTGGATATTCAACGAGATGCGGATCATGCGATGTATCATGCAAAGCACAAAGGCC
GCAATCAGGTTTCATGTCTATCTGTCGCGTTATGTAGAACCTGA

Upstream 100 bases:

>100_bases
TCAAATAAATAAAATCAGGAGAGCAAATCTTAAACTGATAAATTTGAAAAGAAACAAGGAGACTAAAGCTGTATATAAAG
ATGATTCTTAAGGGTAATGT

Downstream 100 bases:

>100_bases
AATGTTTAGATAAAAAAACAGTCGAAAAAATAGAACAGCTAATCTTTGGCTAAAATTGGTAGCTGCAACAGTAATTGTAG
AGCTGGATTACGCTTCAGAA

Product: diguanylate cyclase with PAS/PAC sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MIKKLDLLQGNIDMETLFESMPVAMALTDREGRLLLVNHKMALLSGQNLSDLIGRKVEEVSKEAAENIKYEFRMFDAGLD
VPNRELKIGDKICYTSVKPVRDNDGLAVGVMAALTDITKQKKIERQLAEANKQLKLLADHDSLTNLLNARAYYEVCERMM
SIALRHNKPFSVLFVDLDHFKKINDTHGHHVGDLLLKAVSACILETCRDSDLIGRVGGEEFSLFLPETGMSGAMIFAEKL
RSNIEQLLHPVGTDKNIGITASIGVASKLIHHKAIVDIQRDADHAMYHAKHKGRNQVSCLSVALCRT

Sequences:

>Translated_307_residues
MIKKLDLLQGNIDMETLFESMPVAMALTDREGRLLLVNHKMALLSGQNLSDLIGRKVEEVSKEAAENIKYEFRMFDAGLD
VPNRELKIGDKICYTSVKPVRDNDGLAVGVMAALTDITKQKKIERQLAEANKQLKLLADHDSLTNLLNARAYYEVCERMM
SIALRHNKPFSVLFVDLDHFKKINDTHGHHVGDLLLKAVSACILETCRDSDLIGRVGGEEFSLFLPETGMSGAMIFAEKL
RSNIEQLLHPVGTDKNIGITASIGVASKLIHHKAIVDIQRDADHAMYHAKHKGRNQVSCLSVALCRT
>Mature_307_residues
MIKKLDLLQGNIDMETLFESMPVAMALTDREGRLLLVNHKMALLSGQNLSDLIGRKVEEVSKEAAENIKYEFRMFDAGLD
VPNRELKIGDKICYTSVKPVRDNDGLAVGVMAALTDITKQKKIERQLAEANKQLKLLADHDSLTNLLNARAYYEVCERMM
SIALRHNKPFSVLFVDLDHFKKINDTHGHHVGDLLLKAVSACILETCRDSDLIGRVGGEEFSLFLPETGMSGAMIFAEKL
RSNIEQLLHPVGTDKNIGITASIGVASKLIHHKAIVDIQRDADHAMYHAKHKGRNQVSCLSVALCRT

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=188, Percent_Identity=40.4255319148936, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=38.7878787878788, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=37.3493975903614, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=37.125748502994, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788381, Length=215, Percent_Identity=31.6279069767442, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787802, Length=174, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=32.183908045977, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1787541, Length=303, Percent_Identity=28.0528052805281, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788085, Length=163, Percent_Identity=34.9693251533742, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87081977, Length=116, Percent_Identity=40.5172413793103, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=29.5180722891566, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788956, Length=172, Percent_Identity=31.3953488372093, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=123, Percent_Identity=29.2682926829268, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 34185; Mature: 34185

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKLDLLQGNIDMETLFESMPVAMALTDREGRLLLVNHKMALLSGQNLSDLIGRKVEEV
CCCCCCHHCCCCCHHHHHHHCCEEEEEECCCCCEEEEECCEEEECCCCHHHHHHHHHHHH
SKEAAENIKYEFRMFDAGLDVPNRELKIGDKICYTSVKPVRDNDGLAVGVMAALTDITKQ
HHHHHHCCEEEEEEEECCCCCCCCCEECCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
KKIERQLAEANKQLKLLADHDSLTNLLNARAYYEVCERMMSIALRHNKPFSVLFVDLDHF
HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHH
KKINDTHGHHVGDLLLKAVSACILETCRDSDLIGRVGGEEFSLFLPETGMSGAMIFAEKL
HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEECCCCCCHHHHHHHHH
RSNIEQLLHPVGTDKNIGITASIGVASKLIHHKAIVDIQRDADHAMYHAKHKGRNQVSCL
HHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHEEECCCCHHHHHHHHHCCCCHHHHH
SVALCRT
HHHHHCC
>Mature Secondary Structure
MIKKLDLLQGNIDMETLFESMPVAMALTDREGRLLLVNHKMALLSGQNLSDLIGRKVEEV
CCCCCCHHCCCCCHHHHHHHCCEEEEEECCCCCEEEEECCEEEECCCCHHHHHHHHHHHH
SKEAAENIKYEFRMFDAGLDVPNRELKIGDKICYTSVKPVRDNDGLAVGVMAALTDITKQ
HHHHHHCCEEEEEEEECCCCCCCCCEECCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
KKIERQLAEANKQLKLLADHDSLTNLLNARAYYEVCERMMSIALRHNKPFSVLFVDLDHF
HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHH
KKINDTHGHHVGDLLLKAVSACILETCRDSDLIGRVGGEEFSLFLPETGMSGAMIFAEKL
HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEECCCCCCHHHHHHHHH
RSNIEQLLHPVGTDKNIGITASIGVASKLIHHKAIVDIQRDADHAMYHAKHKGRNQVSCL
HHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHEEECCCCHHHHHHHHHCCCCHHHHH
SVALCRT
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]