Click here to switch to the map view.

The map label for this gene is ybeQ [H]

Identifier: 119944864

GI number: 119944864

Start: 1381472

End: 1383043

Strand: Reverse

Name: ybeQ [H]

Synonym: Ping_1106

Alternate gene names: 119944864

Gene position: 1383043-1381472 (Counterclockwise)

Preceding gene: 119944865

Following gene: 119944863

Centisome position: 30.33

GC content: 39.5

Gene sequence:

>1572_bases
TTGTGGAGAAAATTAGCAAAGCAGGGAGATCCTGCCGCGCAATATGCTTTAGGCTGGATGTATGAAAGTGGACAAGGAGT
TTTAATAGATATCAAGCAAGCTGCCAATTGGTACAAAAAATCTGCAATCCAGAATAATGTTGCAGCACAATATGTCCTGG
CATCTATTTATGACAATAGTACTGAAGCGATAGCAAACCCTGAAAGCGCGGTAGTATGGTATTTAAAAGCCGCTAATCAA
GGTCATGTAGATTCCCAATTTCAATTAGGTTTACACTATCAAGATGGTAACGGTGCACTGCAAAATGATCTGCAAAGTTT
TCTTTGGTTTAGTAAAGCGGCTGCGCAAAGGCATCTCTCTGCACAGCTCCATTTAGGGAAAATTTACCAATCGGGTAAAG
GCGTTAAACAAGATTATCAGGCAGCCATAAAATGGTATAAAGAGGCATCCTCACAAGGCAGTGCCAATGCAACTTTTTAC
CTTGCTCAACTGTATGAATTGGGCCGTGGCGTTGTTCAGGATAACCAACGTGCGCACTCTTTATACTTAGCATCAGCAGC
AAAACATTTTGCGCCTGCAGCTTATAAATCGGGTGAATTTTACGAAAATGGTAAAGCGGGTAAAATCGATTTGAAAGAAG
CGATAAAATGGTACGAAAGCGCGGCAAATAAGGGTGATAGTGCTGCACAATATAAACTTGCCAAGCTTTATCAAGGTGGC
AGCGGTGTCGAGCAAAACATTCGCCTTGCGATTAATTGGTACAAGCAAGCCGCAATCAAAAATCATCCCCAAGCTTATCA
TCATCTTGGTCTTATTTATGAAAATGGTGAACAGGGTATAAACGTTGATAAATCTAAAGCCTTTGATTACTATCAAAAGG
CTTCAGAGTTAGGGGATGTGTCCGCAAGCGCGCAGTTAGCTGCTTATTATGAGCAGGGTATAGGTGTGCCCATAGATATT
GAGTACGCGCTAAAATTATATCAAGAATCCCCTGAAACTTGGGCTAAGGTTAACTATCAAAAACTATCTAAACACAGATT
TTGTTTAGAAAATGCCACAACAGAGCTTTTTTCAGTGCGGATAGCCTGTACTAATAGACAGATATTATCCAAAGAAATCA
AAAATAAGCAGATAACCGTTATTTCTGAAAACCCTGCCGATTGGTCAGATACGTATTTTACGGGTGCTATCGTTGAAGGA
ACAAGTCAGCTGGAAATAACCTATACACGTGAAGATTATTTTGCCAGCGCTCATTATACTTTTATCGGCAGAAGTGATCC
TGATTTAATTACTCGTATTAAAGAGACTGTGAAACAAAAATATGGTGAACCTGATACCTCTGAAGGTGAACCTATGGAAG
GCGAGGCAAGTTTTCAATGGTTATTAGAGGATGGCATTAAATTAGTAGTGCAACGAAAATGGCCAGATACAACAACCTTT
CTAACTTATTCACTGCCTAAGCATATTGAGTTACTAAAAGCACAACAAAAACAATCCCCAAATAAAATCGACCTAGCCCA
TAATAAAGTGGGCAATAAAACAACCAAAAAAGTTGATCCTTCCTTTTTTTAA

Upstream 100 bases:

>100_bases
TCTTAGTACGGTCTTATTAAGCTCGAATTCTTTCGCTCGCCCTAATTTTAATGACGCCTATGAAGCCGCCCAGGCTGGTG
ACTACACGCGTGCAGCTTCA

Downstream 100 bases:

>100_bases
CCTAATTGTTTTAACTGATGCATGTCAAAATATTGTAAAATATTATAAAATCAATTTACCACCGTTTTTTATTAAAAGGT
TTTAAATGCGCAGGAAAATA

Product: TPR repeat- and Sel1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MWRKLAKQGDPAAQYALGWMYESGQGVLIDIKQAANWYKKSAIQNNVAAQYVLASIYDNSTEAIANPESAVVWYLKAANQ
GHVDSQFQLGLHYQDGNGALQNDLQSFLWFSKAAAQRHLSAQLHLGKIYQSGKGVKQDYQAAIKWYKEASSQGSANATFY
LAQLYELGRGVVQDNQRAHSLYLASAAKHFAPAAYKSGEFYENGKAGKIDLKEAIKWYESAANKGDSAAQYKLAKLYQGG
SGVEQNIRLAINWYKQAAIKNHPQAYHHLGLIYENGEQGINVDKSKAFDYYQKASELGDVSASAQLAAYYEQGIGVPIDI
EYALKLYQESPETWAKVNYQKLSKHRFCLENATTELFSVRIACTNRQILSKEIKNKQITVISENPADWSDTYFTGAIVEG
TSQLEITYTREDYFASAHYTFIGRSDPDLITRIKETVKQKYGEPDTSEGEPMEGEASFQWLLEDGIKLVVQRKWPDTTTF
LTYSLPKHIELLKAQQKQSPNKIDLAHNKVGNKTTKKVDPSFF

Sequences:

>Translated_523_residues
MWRKLAKQGDPAAQYALGWMYESGQGVLIDIKQAANWYKKSAIQNNVAAQYVLASIYDNSTEAIANPESAVVWYLKAANQ
GHVDSQFQLGLHYQDGNGALQNDLQSFLWFSKAAAQRHLSAQLHLGKIYQSGKGVKQDYQAAIKWYKEASSQGSANATFY
LAQLYELGRGVVQDNQRAHSLYLASAAKHFAPAAYKSGEFYENGKAGKIDLKEAIKWYESAANKGDSAAQYKLAKLYQGG
SGVEQNIRLAINWYKQAAIKNHPQAYHHLGLIYENGEQGINVDKSKAFDYYQKASELGDVSASAQLAAYYEQGIGVPIDI
EYALKLYQESPETWAKVNYQKLSKHRFCLENATTELFSVRIACTNRQILSKEIKNKQITVISENPADWSDTYFTGAIVEG
TSQLEITYTREDYFASAHYTFIGRSDPDLITRIKETVKQKYGEPDTSEGEPMEGEASFQWLLEDGIKLVVQRKWPDTTTF
LTYSLPKHIELLKAQQKQSPNKIDLAHNKVGNKTTKKVDPSFF
>Mature_523_residues
MWRKLAKQGDPAAQYALGWMYESGQGVLIDIKQAANWYKKSAIQNNVAAQYVLASIYDNSTEAIANPESAVVWYLKAANQ
GHVDSQFQLGLHYQDGNGALQNDLQSFLWFSKAAAQRHLSAQLHLGKIYQSGKGVKQDYQAAIKWYKEASSQGSANATFY
LAQLYELGRGVVQDNQRAHSLYLASAAKHFAPAAYKSGEFYENGKAGKIDLKEAIKWYESAANKGDSAAQYKLAKLYQGG
SGVEQNIRLAINWYKQAAIKNHPQAYHHLGLIYENGEQGINVDKSKAFDYYQKASELGDVSASAQLAAYYEQGIGVPIDI
EYALKLYQESPETWAKVNYQKLSKHRFCLENATTELFSVRIACTNRQILSKEIKNKQITVISENPADWSDTYFTGAIVEG
TSQLEITYTREDYFASAHYTFIGRSDPDLITRIKETVKQKYGEPDTSEGEPMEGEASFQWLLEDGIKLVVQRKWPDTTTF
LTYSLPKHIELLKAQQKQSPNKIDLAHNKVGNKTTKKVDPSFF

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI151301150, Length=312, Percent_Identity=27.8846153846154, Blast_Score=107, Evalue=4e-23,
Organism=Homo sapiens, GI19923669, Length=312, Percent_Identity=26.2820512820513, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI217330658, Length=179, Percent_Identity=31.2849162011173, Blast_Score=69, Evalue=2e-11,
Organism=Homo sapiens, GI217330656, Length=179, Percent_Identity=31.2849162011173, Blast_Score=69, Evalue=2e-11,
Organism=Homo sapiens, GI33620759, Length=171, Percent_Identity=30.4093567251462, Blast_Score=66, Evalue=9e-11,
Organism=Escherichia coli, GI87081769, Length=325, Percent_Identity=32.9230769230769, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1786867, Length=100, Percent_Identity=44, Blast_Score=72, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17563256, Length=352, Percent_Identity=26.4204545454545, Blast_Score=96, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6319410, Length=278, Percent_Identity=29.136690647482, Blast_Score=87, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6319998, Length=292, Percent_Identity=29.1095890410959, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21355295, Length=347, Percent_Identity=28.5302593659942, Blast_Score=91, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 58775; Mature: 58775

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRKLAKQGDPAAQYALGWMYESGQGVLIDIKQAANWYKKSAIQNNVAAQYVLASIYDNS
CCCHHHHCCCCHHHHHEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TEAIANPESAVVWYLKAANQGHVDSQFQLGLHYQDGNGALQNDLQSFLWFSKAAAQRHLS
CHHHCCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
AQLHLGKIYQSGKGVKQDYQAAIKWYKEASSQGSANATFYLAQLYELGRGVVQDNQRAHS
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCCHHHH
LYLASAAKHFAPAAYKSGEFYENGKAGKIDLKEAIKWYESAANKGDSAAQYKLAKLYQGG
HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
SGVEQNIRLAINWYKQAAIKNHPQAYHHLGLIYENGEQGINVDKSKAFDYYQKASELGDV
CCCCCCEEEEEEHHHHHHHCCCCHHHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC
SASAQLAAYYEQGIGVPIDIEYALKLYQESPETWAKVNYQKLSKHRFCLENATTELFSVR
CHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCEEEEEE
IACTNRQILSKEIKNKQITVISENPADWSDTYFTGAIVEGTSQLEITYTREDYFASAHYT
EEECCHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEECCCEEEEEEECHHHEEEEEEE
FIGRSDPDLITRIKETVKQKYGEPDTSEGEPMEGEASFQWLLEDGIKLVVQRKWPDTTTF
EECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCEEE
LTYSLPKHIELLKAQQKQSPNKIDLAHNKVGNKTTKKVDPSFF
EEECCHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MWRKLAKQGDPAAQYALGWMYESGQGVLIDIKQAANWYKKSAIQNNVAAQYVLASIYDNS
CCCHHHHCCCCHHHHHEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TEAIANPESAVVWYLKAANQGHVDSQFQLGLHYQDGNGALQNDLQSFLWFSKAAAQRHLS
CHHHCCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
AQLHLGKIYQSGKGVKQDYQAAIKWYKEASSQGSANATFYLAQLYELGRGVVQDNQRAHS
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCCHHHH
LYLASAAKHFAPAAYKSGEFYENGKAGKIDLKEAIKWYESAANKGDSAAQYKLAKLYQGG
HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
SGVEQNIRLAINWYKQAAIKNHPQAYHHLGLIYENGEQGINVDKSKAFDYYQKASELGDV
CCCCCCEEEEEEHHHHHHHCCCCHHHHEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC
SASAQLAAYYEQGIGVPIDIEYALKLYQESPETWAKVNYQKLSKHRFCLENATTELFSVR
CHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCEEEEEE
IACTNRQILSKEIKNKQITVISENPADWSDTYFTGAIVEGTSQLEITYTREDYFASAHYT
EEECCHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEECCCEEEEEEECHHHEEEEEEE
FIGRSDPDLITRIKETVKQKYGEPDTSEGEPMEGEASFQWLLEDGIKLVVQRKWPDTTTF
EECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCEEE
LTYSLPKHIELLKAQQKQSPNKIDLAHNKVGNKTTKKVDPSFF
EEECCHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]