| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is glcA [H]
Identifier: 119944331
GI number: 119944331
Start: 721285
End: 722634
Strand: Reverse
Name: glcA [H]
Synonym: Ping_0558
Alternate gene names: 119944331
Gene position: 722634-721285 (Counterclockwise)
Preceding gene: 119944333
Following gene: 119944330
Centisome position: 15.85
GC content: 43.78
Gene sequence:
>1350_bases ATGACATTACAGCTCCAGAAAATGTATTTTTGTATTGGTCAGAAACTACAAAAATCACGGACAACTCTTTTAGCAGCTTT ATTAATGCTCAGCTTCAGCAGCTCGGCAATGGCTGGCTGGGAACTGCAGTGGATTGATAAATTTGATGGAACAAGTGTTA ACTGGGATAACTGGACCGCGCAGACACAAGCCAACTATAACAATGAAGTACAGTGCTATACCAATGATGACAGCTCGGTG AATAAAAACTATGATGTTTCGGACGGCACCCTGAAAATTATTGCCCGTAAACAAAACATTAATTGTCCCGGCTTAGGCGG CACGCAAAAAAGCTGGACCTCGGGCCGTTTAAACAGCAAAGATAAAAACGAATTTCTTTATGGACGGATAGAATCAAGAA TCAAATTCCACAATTTAGAAGGTGGTACCTGGCCAGCATTCTGGATGCTGGAAAATCGTATTGCTGAGCAACCTGTTAAG GGTGATGGTGACTCTATTAACTGGCCCAATGCAGGGGCTGGCGAAATTGATGTCTGGGAATGGTTTTCTAACGCACCTAA TACTTATATCACTAACTTCTTTAACACCGAAAGCTGTGCTGGTGAGACGCTGTATAGCTACCCGAACGGTGGACCTGATG TACAAAACTGGCACAACTACGCACTGGAATGGAGCAAAGATAACACCTCTTTTTACATTGATGACATTCTGGTTGTCTCA CAAGATATGAGTAGTTGTAATCAATATCAAGAACCAATGTTTGTGCTGCTCAATGTCGCAATGGGTGGCAACTTAGGTGG CAACATCAACCCAAGCCTCACCCAAGCCACAATGGAAATCGACTATGTTGCCCACTGTCAACCTTCTGCTGCCAACAACG CAACTTACTGCAATCAAGCACTTGCCGAGCAAAATAATGGTTTGCCCGAGGTCAGCATCAAGATCACTCAAAACGGGTAC ACTATTACTGATATTAACCCCGATAATGGTTTAGTCACACTCAGCGCACAAACCGGCAATATAAATGCAGACAGCAGTTA CAGCTATGACTGGTATACCAGTGGCCTGGCCAGCCCGATCATAACAGGGAATCAAATAAACTTTGACCCGTCTTCAATGG TTAATGGTTATTATTATGTGTCTGTTATCCTGACGGACGATCAGAATCCCACACAGACAGATAGAGATGCGCAAACACTT AAAGTGATATCGGAGTCAATATCCACCAGCAATACAATTAATGCCAACAGTACGGGTGGTAGTATAAGCGCAGGCATTTT ATTATTTTTAGGTTTATTGGGCTTGTTCCGCGCCCGGCACAGCCTCCCCCATCAAAGCGCAGGCAAATAA
Upstream 100 bases:
>100_bases ATAAAGAAAGCGCTTACTCTTGGTCATAAGACATGTAAAAATAGATCCTTAACCCGCAACTTAACAGACCATTAATAGTT AATAAATTTACGAGGTTATA
Downstream 100 bases:
>100_bases AGAACGGAACATGAGTAACACTTCCTGGAGTGTAGATAATATTGTTTTAGAAGAACCAGAAATTGTTACCTTCCCAATTT TATTAGCATCGTGAGTGCTA
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: (1->3)-beta-glucan endohydrolase; (1->3)-beta-glucanase A1 [H]
Number of amino acids: Translated: 449; Mature: 448
Protein sequence:
>449_residues MTLQLQKMYFCIGQKLQKSRTTLLAALLMLSFSSSAMAGWELQWIDKFDGTSVNWDNWTAQTQANYNNEVQCYTNDDSSV NKNYDVSDGTLKIIARKQNINCPGLGGTQKSWTSGRLNSKDKNEFLYGRIESRIKFHNLEGGTWPAFWMLENRIAEQPVK GDGDSINWPNAGAGEIDVWEWFSNAPNTYITNFFNTESCAGETLYSYPNGGPDVQNWHNYALEWSKDNTSFYIDDILVVS QDMSSCNQYQEPMFVLLNVAMGGNLGGNINPSLTQATMEIDYVAHCQPSAANNATYCNQALAEQNNGLPEVSIKITQNGY TITDINPDNGLVTLSAQTGNINADSSYSYDWYTSGLASPIITGNQINFDPSSMVNGYYYVSVILTDDQNPTQTDRDAQTL KVISESISTSNTINANSTGGSISAGILLFLGLLGLFRARHSLPHQSAGK
Sequences:
>Translated_449_residues MTLQLQKMYFCIGQKLQKSRTTLLAALLMLSFSSSAMAGWELQWIDKFDGTSVNWDNWTAQTQANYNNEVQCYTNDDSSV NKNYDVSDGTLKIIARKQNINCPGLGGTQKSWTSGRLNSKDKNEFLYGRIESRIKFHNLEGGTWPAFWMLENRIAEQPVK GDGDSINWPNAGAGEIDVWEWFSNAPNTYITNFFNTESCAGETLYSYPNGGPDVQNWHNYALEWSKDNTSFYIDDILVVS QDMSSCNQYQEPMFVLLNVAMGGNLGGNINPSLTQATMEIDYVAHCQPSAANNATYCNQALAEQNNGLPEVSIKITQNGY TITDINPDNGLVTLSAQTGNINADSSYSYDWYTSGLASPIITGNQINFDPSSMVNGYYYVSVILTDDQNPTQTDRDAQTL KVISESISTSNTINANSTGGSISAGILLFLGLLGLFRARHSLPHQSAGK >Mature_448_residues TLQLQKMYFCIGQKLQKSRTTLLAALLMLSFSSSAMAGWELQWIDKFDGTSVNWDNWTAQTQANYNNEVQCYTNDDSSVN KNYDVSDGTLKIIARKQNINCPGLGGTQKSWTSGRLNSKDKNEFLYGRIESRIKFHNLEGGTWPAFWMLENRIAEQPVKG DGDSINWPNAGAGEIDVWEWFSNAPNTYITNFFNTESCAGETLYSYPNGGPDVQNWHNYALEWSKDNTSFYIDDILVVSQ DMSSCNQYQEPMFVLLNVAMGGNLGGNINPSLTQATMEIDYVAHCQPSAANNATYCNQALAEQNNGLPEVSIKITQNGYT ITDINPDNGLVTLSAQTGNINADSSYSYDWYTSGLASPIITGNQINFDPSSMVNGYYYVSVILTDDQNPTQTDRDAQTLK VISESISTSNTINANSTGGSISAGILLFLGLLGLFRARHSLPHQSAGK
Specific function: Lysis of cellular walls containing beta-1,3-glucans. Implicated in the defense against fungal pathogens [H]
COG id: COG2273
COG function: function code G; Beta-glucanase/Beta-glucan synthetase
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 16 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008985 - InterPro: IPR013320 - InterPro: IPR000757 - InterPro: IPR008263 [H]
Pfam domain/function: PF00722 Glyco_hydro_16 [H]
EC number: =3.2.1.39 [H]
Molecular weight: Translated: 49610; Mature: 49479
Theoretical pI: Translated: 4.35; Mature: 4.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLQLQKMYFCIGQKLQKSRTTLLAALLMLSFSSSAMAGWELQWIDKFDGTSVNWDNWTA CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEE QTQANYNNEVQCYTNDDSSVNKNYDVSDGTLKIIARKQNINCPGLGGTQKSWTSGRLNSK EEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC DKNEFLYGRIESRIKFHNLEGGTWPAFWMLENRIAEQPVKGDGDSINWPNAGAGEIDVWE CCCCEEEEEEECEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEHHH WFSNAPNTYITNFFNTESCAGETLYSYPNGGPDVQNWHNYALEWSKDNTSFYIDDILVVS HHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEE QDMSSCNQYQEPMFVLLNVAMGGNLGGNINPSLTQATMEIDYVAHCQPSAANNATYCNQA HHHHHHHHHCCCEEEEEEEHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHHH LAEQNNGLPEVSIKITQNGYTITDINPDNGLVTLSAQTGNINADSSYSYDWYTSGLASPI HHHHCCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCCC ITGNQINFDPSSMVNGYYYVSVILTDDQNPTQTDRDAQTLKVISESISTSNTINANSTGG EECCCCCCCHHHHCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC SISAGILLFLGLLGLFRARHSLPHQSAGK CHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TLQLQKMYFCIGQKLQKSRTTLLAALLMLSFSSSAMAGWELQWIDKFDGTSVNWDNWTA CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEE QTQANYNNEVQCYTNDDSSVNKNYDVSDGTLKIIARKQNINCPGLGGTQKSWTSGRLNSK EEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC DKNEFLYGRIESRIKFHNLEGGTWPAFWMLENRIAEQPVKGDGDSINWPNAGAGEIDVWE CCCCEEEEEEECEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEHHH WFSNAPNTYITNFFNTESCAGETLYSYPNGGPDVQNWHNYALEWSKDNTSFYIDDILVVS HHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEEEE QDMSSCNQYQEPMFVLLNVAMGGNLGGNINPSLTQATMEIDYVAHCQPSAANNATYCNQA HHHHHHHHHCCCEEEEEEEHCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCHHHHHH LAEQNNGLPEVSIKITQNGYTITDINPDNGLVTLSAQTGNINADSSYSYDWYTSGLASPI HHHHCCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCCC ITGNQINFDPSSMVNGYYYVSVILTDDQNPTQTDRDAQTLKVISESISTSNTINANSTGG EECCCCCCCHHHHCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC SISAGILLFLGLLGLFRARHSLPHQSAGK CHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2311931 [H]