Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 119944283

GI number: 119944283

Start: 646514

End: 648457

Strand: Reverse

Name: yciR [C]

Synonym: Ping_0509

Alternate gene names: 119944283

Gene position: 648457-646514 (Counterclockwise)

Preceding gene: 119944284

Following gene: 119944282

Centisome position: 14.22

GC content: 40.48

Gene sequence:

>1944_bases
TTGATCGTAGTGTTTTTAAAATTGCGAACATCTTGCAACATTGCATTTAAGAACATAACCACATTAGTGAGTGCTACCGT
GAAAATTAAAGAAAGGTTTAATATTTTGAATTTAGACGCTAATGAAAAACTGCTCTTTCAAAGTGAAGAAAAAGAAAAGC
TGGCCGCTGAGTTAATCATTGCCGAGGAAGAAAAAGAAAAGCTGGCTGCCGAGTTAGTCATTGCCAAGGAAGAAAAAGAA
AAACTGGCTGCCGAATTAGTCATTGCTCTTGAATTTCGTATTGCCGCCACTGCCTTTGAATCTCAAGAAGGCATGTTTAT
CACCGATGCTAATAACCGTATTCTTCGCGTGAATAAGGCCTATATCAGAATTTCAGGCTACAGTGCAGAAGAAGTTATTG
GACAAAAACCTAAGCTATTTAGCTCTGGCCGGCAAGAAAAAGTGTTCTATAAGGCGATGTGGGACAGTATCAACAGCACC
GACGCATGGGAAGGTGAGATATGGAATAGCCGCAAAAATGGTGATATCTATCCTGGACATATGACTATTACTGCAGTGAA
AGATACCAACGGGATGGTCTCTAATTATGTCGCTATGATCATAGATATTACGTTAGACAAAGCTGCCTCGGAAGAAATCA
ATAACCTCGCCTACTTTGATCCGCTCACTAAGTTGCCAAACCGCCGTCTATTGCTTGATGAACTTAATCTTGCCCTCACT
ATTAATGCGCGCACTCATCAGTATGGTGCATTACTGTTTATTGATTTAGACCACCTTAAAACCCTCAATAATACCCGTGG
CCACGATGTGGGAAATTTATTATTAAAACAAGTAACCACCCGCTTAACTGAAAGTGTTAGAGAAGGTGATACCATCGCTC
GATTGGGCTGTAATGAGTTTGTGGTGGTGTTAGAAAACCTCAGCCCACAAGCAATTAAAGCTACTGCACAAACCAAACAG
ATGGCCAAAAAAATCCTCTTTACACTGACTCAACCCTACTCACTCAATGCGATCAAGTATCACTGCACCCTCAGTATCGG
CGCGACAATTTTCAATGGGCATGAATTGGGATCAGAGGAGCTGTTAAAGCAAGCGGATATTGCTATGTATCAATCCAAGG
ACGCAGGGCGTAACAGCCTTTGTTTCTTTAATCAAACAATGCTGGAAGCTATTACTATCCGTGCAGAGATGGAAAATGAA
CTGCACAAAGCGATTAAACAAAATCAATTCCAACTATATTATCAAATACAGGTTAACGGCTCTGGTCAAGCATTAGGAGC
TGAAGCCTTAATCCGCTGGCAACATCCAGAACGTGGTCAGATTTCACCCTTTAACTTTATTCCTTTAGCCGAAGAAACAG
GGCTTATTTTACCGATAGGGCAATGGGTATTAGATACCGCCTGTGCTCAACTTAAAAAATGGCAACAGAACCCACTGACA
CAAGACCTTGTACTCGCCGTTAATGTCAGTGCGAAACAATTTCATCAAGAAGACTTTATAGAACAAGTCAAAACCACTCT
GCAACGTCATCAGATTATCCCTGACCGACTAAAGCTAGAACTAACCGAAAGTATGTTGGTGGAAAATATTAGCGATATCA
TTATCAAAATGAATACGCTCAGAAAAATAGGTATTTTATTCTCATTAGACGACTTTGGCACTGGTTATTCTTCTTTACAA
TATCTAAAAAGATTGCCCATCAATCAATTAAAAATAGACCAGTCATTTGTGCGTGACCTTATTACGGATGCCCATGACAG
AATAATTGTACGCACTATCATTGCCATGTCACATAGCTTAGGTATCGACGTTATTGCCGAGGGTGTCGAGACAGTAGAAG
AAAAACAATTCCTGTTGAATAAAGGCTGTACCCATTATCAAGGTTATTTATTTAGCAAACCCGTGCCAATTGATGAGTTT
GAGGCGTTGCTTAAGTCGGGCTGA

Upstream 100 bases:

>100_bases
TATTGTTCAATAGGCCAAACATCACTAAATTCACTAAAAAACAAAAATTAAATCTATTTAATTTGTAATATTTAATAATT
CATATTGCTCTCTCCTTTCT

Downstream 100 bases:

>100_bases
TTGTTAATGGTCTACGTTATCGCTGATCGTTATTGAATCTGGTGATTTATTCGTCTGCAGAGCAATATAACTGGTGCGGA
TGAAAAGCGAGGCACATACC

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 647; Mature: 647

Protein sequence:

>647_residues
MIVVFLKLRTSCNIAFKNITTLVSATVKIKERFNILNLDANEKLLFQSEEKEKLAAELIIAEEEKEKLAAELVIAKEEKE
KLAAELVIALEFRIAATAFESQEGMFITDANNRILRVNKAYIRISGYSAEEVIGQKPKLFSSGRQEKVFYKAMWDSINST
DAWEGEIWNSRKNGDIYPGHMTITAVKDTNGMVSNYVAMIIDITLDKAASEEINNLAYFDPLTKLPNRRLLLDELNLALT
INARTHQYGALLFIDLDHLKTLNNTRGHDVGNLLLKQVTTRLTESVREGDTIARLGCNEFVVVLENLSPQAIKATAQTKQ
MAKKILFTLTQPYSLNAIKYHCTLSIGATIFNGHELGSEELLKQADIAMYQSKDAGRNSLCFFNQTMLEAITIRAEMENE
LHKAIKQNQFQLYYQIQVNGSGQALGAEALIRWQHPERGQISPFNFIPLAEETGLILPIGQWVLDTACAQLKKWQQNPLT
QDLVLAVNVSAKQFHQEDFIEQVKTTLQRHQIIPDRLKLELTESMLVENISDIIIKMNTLRKIGILFSLDDFGTGYSSLQ
YLKRLPINQLKIDQSFVRDLITDAHDRIIVRTIIAMSHSLGIDVIAEGVETVEEKQFLLNKGCTHYQGYLFSKPVPIDEF
EALLKSG

Sequences:

>Translated_647_residues
MIVVFLKLRTSCNIAFKNITTLVSATVKIKERFNILNLDANEKLLFQSEEKEKLAAELIIAEEEKEKLAAELVIAKEEKE
KLAAELVIALEFRIAATAFESQEGMFITDANNRILRVNKAYIRISGYSAEEVIGQKPKLFSSGRQEKVFYKAMWDSINST
DAWEGEIWNSRKNGDIYPGHMTITAVKDTNGMVSNYVAMIIDITLDKAASEEINNLAYFDPLTKLPNRRLLLDELNLALT
INARTHQYGALLFIDLDHLKTLNNTRGHDVGNLLLKQVTTRLTESVREGDTIARLGCNEFVVVLENLSPQAIKATAQTKQ
MAKKILFTLTQPYSLNAIKYHCTLSIGATIFNGHELGSEELLKQADIAMYQSKDAGRNSLCFFNQTMLEAITIRAEMENE
LHKAIKQNQFQLYYQIQVNGSGQALGAEALIRWQHPERGQISPFNFIPLAEETGLILPIGQWVLDTACAQLKKWQQNPLT
QDLVLAVNVSAKQFHQEDFIEQVKTTLQRHQIIPDRLKLELTESMLVENISDIIIKMNTLRKIGILFSLDDFGTGYSSLQ
YLKRLPINQLKIDQSFVRDLITDAHDRIIVRTIIAMSHSLGIDVIAEGVETVEEKQFLLNKGCTHYQGYLFSKPVPIDEF
EALLKSG
>Mature_647_residues
MIVVFLKLRTSCNIAFKNITTLVSATVKIKERFNILNLDANEKLLFQSEEKEKLAAELIIAEEEKEKLAAELVIAKEEKE
KLAAELVIALEFRIAATAFESQEGMFITDANNRILRVNKAYIRISGYSAEEVIGQKPKLFSSGRQEKVFYKAMWDSINST
DAWEGEIWNSRKNGDIYPGHMTITAVKDTNGMVSNYVAMIIDITLDKAASEEINNLAYFDPLTKLPNRRLLLDELNLALT
INARTHQYGALLFIDLDHLKTLNNTRGHDVGNLLLKQVTTRLTESVREGDTIARLGCNEFVVVLENLSPQAIKATAQTKQ
MAKKILFTLTQPYSLNAIKYHCTLSIGATIFNGHELGSEELLKQADIAMYQSKDAGRNSLCFFNQTMLEAITIRAEMENE
LHKAIKQNQFQLYYQIQVNGSGQALGAEALIRWQHPERGQISPFNFIPLAEETGLILPIGQWVLDTACAQLKKWQQNPLT
QDLVLAVNVSAKQFHQEDFIEQVKTTLQRHQIIPDRLKLELTESMLVENISDIIIKMNTLRKIGILFSLDDFGTGYSSLQ
YLKRLPINQLKIDQSFVRDLITDAHDRIIVRTIIAMSHSLGIDVIAEGVETVEEKQFLLNKGCTHYQGYLFSKPVPIDEF
EALLKSG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=560, Percent_Identity=33.5714285714286, Blast_Score=307, Evalue=1e-84,
Organism=Escherichia coli, GI87081921, Length=480, Percent_Identity=32.7083333333333, Blast_Score=235, Evalue=6e-63,
Organism=Escherichia coli, GI226510982, Length=435, Percent_Identity=30.8045977011494, Blast_Score=198, Evalue=9e-52,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=36.8421052631579, Blast_Score=154, Evalue=2e-38,
Organism=Escherichia coli, GI1787055, Length=414, Percent_Identity=28.5024154589372, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI87081845, Length=317, Percent_Identity=32.807570977918, Blast_Score=146, Evalue=3e-36,
Organism=Escherichia coli, GI1788502, Length=274, Percent_Identity=31.7518248175182, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI1786507, Length=247, Percent_Identity=33.6032388663968, Blast_Score=140, Evalue=4e-34,
Organism=Escherichia coli, GI1788849, Length=466, Percent_Identity=27.0386266094421, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI87081980, Length=257, Percent_Identity=33.0739299610895, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=32.6530612244898, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788381, Length=314, Percent_Identity=26.7515923566879, Blast_Score=112, Evalue=1e-25,
Organism=Escherichia coli, GI87082096, Length=243, Percent_Identity=30.4526748971193, Blast_Score=106, Evalue=6e-24,
Organism=Escherichia coli, GI1787262, Length=196, Percent_Identity=31.6326530612245, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI145693134, Length=197, Percent_Identity=31.9796954314721, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1786584, Length=164, Percent_Identity=35.3658536585366, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87081977, Length=184, Percent_Identity=29.8913043478261, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=30.7692307692308, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1787410, Length=139, Percent_Identity=28.0575539568345, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1788956, Length=168, Percent_Identity=31.547619047619, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI87082007, Length=166, Percent_Identity=30.7228915662651, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=26.6272189349112, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1789650, Length=434, Percent_Identity=19.5852534562212, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 73142; Mature: 73142

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVVFLKLRTSCNIAFKNITTLVSATVKIKERFNILNLDANEKLLFQSEEKEKLAAELII
CEEEEEEECCCCCEEHHHHHHHHHHHHEEECCCCEEECCCCCCEEECCCHHHHHHHHHHE
AEEEKEKLAAELVIAKEEKEKLAAELVIALEFRIAATAFESQEGMFITDANNRILRVNKA
ECHHHHHHHHHHHEEHHHHHHHHHHHHHHEEEEEEEEEECCCCCEEEECCCCCEEEEEEE
YIRISGYSAEEVIGQKPKLFSSGRQEKVFYKAMWDSINSTDAWEGEIWNSRKNGDIYPGH
EEEEECCCHHHHHCCCCCHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCE
MTITAVKDTNGMVSNYVAMIIDITLDKAASEEINNLAYFDPLTKLPNRRLLLDELNLALT
EEEEEEECCCCHHHHHEEEEEEEECCHHHHHHHCCEEEECHHHHCCCCEEEEEECCEEEE
INARTHQYGALLFIDLDHLKTLNNTRGHDVGNLLLKQVTTRLTESVREGDTIARLGCNEF
EECCCCCCCEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCE
VVVLENLSPQAIKATAQTKQMAKKILFTLTQPYSLNAIKYHCTLSIGATIFNGHELGSEE
EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECEEEECCCCCCHHH
LLKQADIAMYQSKDAGRNSLCFFNQTMLEAITIRAEMENELHKAIKQNQFQLYYQIQVNG
HHHHHHHHHEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECC
SGQALGAEALIRWQHPERGQISPFNFIPLAEETGLILPIGQWVLDTACAQLKKWQQNPLT
CCCEECCHHEEEECCCCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCC
QDLVLAVNVSAKQFHQEDFIEQVKTTLQRHQIIPDRLKLELTESMLVENISDIIIKMNTL
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RKIGILFSLDDFGTGYSSLQYLKRLPINQLKIDQSFVRDLITDAHDRIIVRTIIAMSHSL
HEEEEEEEECCCCCCHHHHHHHHHCCCCCEECCHHHHHHHHHCCCCHHHHHHHHHHHHCC
GIDVIAEGVETVEEKQFLLNKGCTHYQGYLFSKPVPIDEFEALLKSG
CHHHHHHHHHHHHHHHHHHHCCCCHHCCEEECCCCCHHHHHHHHHCC
>Mature Secondary Structure
MIVVFLKLRTSCNIAFKNITTLVSATVKIKERFNILNLDANEKLLFQSEEKEKLAAELII
CEEEEEEECCCCCEEHHHHHHHHHHHHEEECCCCEEECCCCCCEEECCCHHHHHHHHHHE
AEEEKEKLAAELVIAKEEKEKLAAELVIALEFRIAATAFESQEGMFITDANNRILRVNKA
ECHHHHHHHHHHHEEHHHHHHHHHHHHHHEEEEEEEEEECCCCCEEEECCCCCEEEEEEE
YIRISGYSAEEVIGQKPKLFSSGRQEKVFYKAMWDSINSTDAWEGEIWNSRKNGDIYPGH
EEEEECCCHHHHHCCCCCHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCE
MTITAVKDTNGMVSNYVAMIIDITLDKAASEEINNLAYFDPLTKLPNRRLLLDELNLALT
EEEEEEECCCCHHHHHEEEEEEEECCHHHHHHHCCEEEECHHHHCCCCEEEEEECCEEEE
INARTHQYGALLFIDLDHLKTLNNTRGHDVGNLLLKQVTTRLTESVREGDTIARLGCNEF
EECCCCCCCEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCE
VVVLENLSPQAIKATAQTKQMAKKILFTLTQPYSLNAIKYHCTLSIGATIFNGHELGSEE
EEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECEEEECCCCCCHHH
LLKQADIAMYQSKDAGRNSLCFFNQTMLEAITIRAEMENELHKAIKQNQFQLYYQIQVNG
HHHHHHHHHEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECC
SGQALGAEALIRWQHPERGQISPFNFIPLAEETGLILPIGQWVLDTACAQLKKWQQNPLT
CCCEECCHHEEEECCCCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCC
QDLVLAVNVSAKQFHQEDFIEQVKTTLQRHQIIPDRLKLELTESMLVENISDIIIKMNTL
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RKIGILFSLDDFGTGYSSLQYLKRLPINQLKIDQSFVRDLITDAHDRIIVRTIIAMSHSL
HEEEEEEEECCCCCCHHHHHHHHHCCCCCEECCHHHHHHHHHCCCCHHHHHHHHHHHHCC
GIDVIAEGVETVEEKQFLLNKGCTHYQGYLFSKPVPIDEFEALLKSG
CHHHHHHHHHHHHHHHHHHHCCCCHHCCEEECCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]