| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is serC [H]
Identifier: 119944282
GI number: 119944282
Start: 644676
End: 645800
Strand: Reverse
Name: serC [H]
Synonym: Ping_0508
Alternate gene names: 119944282
Gene position: 645800-644676 (Counterclockwise)
Preceding gene: 119944283
Following gene: 119944281
Centisome position: 14.16
GC content: 41.96
Gene sequence:
>1125_bases ATGAGTACCCCACAACCAAGCATCAAACCTGCTGTTCCTAATTTTTCATCTGGCCCATGTGCAAAACGTCCGGGTTATGA TGTGAGTCAACTCGATCTTTGTGCATTAGGCCGTTCTCATCGATCCAGTCTTGGCAAAAAAGCATTAGAAAAAGTTATTT CCGATACGGCTGAAATATTGCAACTGCCTAAAGGTTACCGCGTGGGTATTGTTCCAGCTTCAGATACTGGCGCGATGGAG ATGATTTTATGGTCAATGCTCGGCCCAAGACCCGTTGATGTCTGCTACTGGGAGTCATTTGGTGAAGGCTGGTATGCTGA TATTATCAAGCAGCTGAAATTAGACAAAGTCAATAAAATCAGCGCAGATTACGGACAGTTACCCGATTTATCAAAAGTTA ATCCAGAAAATGATATTGTTTTCACTTGGAATGGCACAACCTCTGGTGTTAAGGTTGAGAATGGTGATTTTATTAAAGAT GATCGCCAGGGACTAACTATTTGTGATGCAACTTCTGCTGTATTTGCGATGCCATTACCTTGGGAAAAATTAGATGTTAC CACCTTTAGCTGGCAGAAAGTGCTTGGCGGTGAAGGGGCTCACGGAATTATTATTTTAAGTCCCCGTGCCGTTGAGCGTT TAGAAAGCTATACACCAAGCTGGCCTTTACCTAAAATATTCCGCTTAACAGCAGGCGGAAAACTGATTGAAGGTATTTTT AATGGTGCAACCATTAACACCCCTTCTATGCTTTGTATCGCTGATTACCAAGACGCCCTTAACTGGGTAAAAGAGATGGG AGGTGTTCAAGCAAGCATCCAAAAATCTTTGGATAACTTAGCTGTTTTAGAGACGTTTGTGGCCAATAATAGCTGGATTA ATTTCTTAGCTGAAAAAGCAAACACTCGCTCAAATACCAGCGTCTGTTTATCCCTTGATTTAAGTGATTCACAAATTAAA GCATTGGTTAACTTACTGGCAGAAGAGCAAGTTGCCTATGATATTGCAGCTTATAAAGACGCGCCCAGTGGTTTACGCAT TTGGTGTGGCAGCACAGTAGAAAAACACGATTTACAAGCTTTATTGCCTTGGCTAACTTGGGCTTACCAAGAAGTCACCG TATAA
Upstream 100 bases:
>100_bases AAAATTTTTTTTATGTTTAACTACTCGTAGCCAGTTGCTATTCTCTAGTGTATTTTTACGATTTAAACACAGTGATTATT TAACGAGGATTTTGATTAAT
Downstream 100 bases:
>100_bases CAGCACAACAAAATTTAAGGGTACTCATGAATAATAATAAATTCGATTTTGACTATATCTGTATTGGCGGCGGCAGTGGC GGCATTGCCTCGGCTAATCG
Product: phosphoserine aminotransferase
Products: NA
Alternate protein names: Phosphohydroxythreonine aminotransferase; PSAT [H]
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MSTPQPSIKPAVPNFSSGPCAKRPGYDVSQLDLCALGRSHRSSLGKKALEKVISDTAEILQLPKGYRVGIVPASDTGAME MILWSMLGPRPVDVCYWESFGEGWYADIIKQLKLDKVNKISADYGQLPDLSKVNPENDIVFTWNGTTSGVKVENGDFIKD DRQGLTICDATSAVFAMPLPWEKLDVTTFSWQKVLGGEGAHGIIILSPRAVERLESYTPSWPLPKIFRLTAGGKLIEGIF NGATINTPSMLCIADYQDALNWVKEMGGVQASIQKSLDNLAVLETFVANNSWINFLAEKANTRSNTSVCLSLDLSDSQIK ALVNLLAEEQVAYDIAAYKDAPSGLRIWCGSTVEKHDLQALLPWLTWAYQEVTV
Sequences:
>Translated_374_residues MSTPQPSIKPAVPNFSSGPCAKRPGYDVSQLDLCALGRSHRSSLGKKALEKVISDTAEILQLPKGYRVGIVPASDTGAME MILWSMLGPRPVDVCYWESFGEGWYADIIKQLKLDKVNKISADYGQLPDLSKVNPENDIVFTWNGTTSGVKVENGDFIKD DRQGLTICDATSAVFAMPLPWEKLDVTTFSWQKVLGGEGAHGIIILSPRAVERLESYTPSWPLPKIFRLTAGGKLIEGIF NGATINTPSMLCIADYQDALNWVKEMGGVQASIQKSLDNLAVLETFVANNSWINFLAEKANTRSNTSVCLSLDLSDSQIK ALVNLLAEEQVAYDIAAYKDAPSGLRIWCGSTVEKHDLQALLPWLTWAYQEVTV >Mature_373_residues STPQPSIKPAVPNFSSGPCAKRPGYDVSQLDLCALGRSHRSSLGKKALEKVISDTAEILQLPKGYRVGIVPASDTGAMEM ILWSMLGPRPVDVCYWESFGEGWYADIIKQLKLDKVNKISADYGQLPDLSKVNPENDIVFTWNGTTSGVKVENGDFIKDD RQGLTICDATSAVFAMPLPWEKLDVTTFSWQKVLGGEGAHGIIILSPRAVERLESYTPSWPLPKIFRLTAGGKLIEGIFN GATINTPSMLCIADYQDALNWVKEMGGVQASIQKSLDNLAVLETFVANNSWINFLAEKANTRSNTSVCLSLDLSDSQIKA LVNLLAEEQVAYDIAAYKDAPSGLRIWCGSTVEKHDLQALLPWLTWAYQEVTV
Specific function: Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine [H]
COG id: COG1932
COG function: function code HE; Phosphoserine aminotransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000192 - InterPro: IPR022278 - InterPro: IPR006271 - InterPro: IPR015424 - InterPro: IPR015421 [H]
Pfam domain/function: PF00266 Aminotran_5 [H]
EC number: =2.6.1.52 [H]
Molecular weight: Translated: 41005; Mature: 40874
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPQPSIKPAVPNFSSGPCAKRPGYDVSQLDLCALGRSHRSSLGKKALEKVISDTAEIL CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH QLPKGYRVGIVPASDTGAMEMILWSMLGPRPVDVCYWESFGEGWYADIIKQLKLDKVNKI HCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEHHCCCCHHHHHHHHHHHHHHHHC SADYGQLPDLSKVNPENDIVFTWNGTTSGVKVENGDFIKDDRQGLTICDATSAVFAMPLP CCCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCEECCCCCCCEEEECCCCEEECCCC WEKLDVTTFSWQKVLGGEGAHGIIILSPRAVERLESYTPSWPLPKIFRLTAGGKLIEGIF CCCEEEEEEHHHHHHCCCCCCEEEEECCHHHHHHHHCCCCCCCCHHEEECCCCHHHHHHH NGATINTPSMLCIADYQDALNWVKEMGGVQASIQKSLDNLAVLETFVANNSWINFLAEKA CCCEECCCCEEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC NTRSNTSVCLSLDLSDSQIKALVNLLAEEQVAYDIAAYKDAPSGLRIWCGSTVEKHDLQA CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHH LLPWLTWAYQEVTV HHHHHHHHHHHCCC >Mature Secondary Structure STPQPSIKPAVPNFSSGPCAKRPGYDVSQLDLCALGRSHRSSLGKKALEKVISDTAEIL CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH QLPKGYRVGIVPASDTGAMEMILWSMLGPRPVDVCYWESFGEGWYADIIKQLKLDKVNKI HCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEHHCCCCHHHHHHHHHHHHHHHHC SADYGQLPDLSKVNPENDIVFTWNGTTSGVKVENGDFIKDDRQGLTICDATSAVFAMPLP CCCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCEECCCCCCCEEEECCCCEEECCCC WEKLDVTTFSWQKVLGGEGAHGIIILSPRAVERLESYTPSWPLPKIFRLTAGGKLIEGIF CCCEEEEEEHHHHHHCCCCCCEEEEECCHHHHHHHHCCCCCCCCHHEEECCCCHHHHHHH NGATINTPSMLCIADYQDALNWVKEMGGVQASIQKSLDNLAVLETFVANNSWINFLAEKA CCCEECCCCEEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC NTRSNTSVCLSLDLSDSQIKALVNLLAEEQVAYDIAAYKDAPSGLRIWCGSTVEKHDLQA CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHH LLPWLTWAYQEVTV HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11932238 [H]