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The map label for this gene is yddU [C]

Identifier: 119944258

GI number: 119944258

Start: 610888

End: 612108

Strand: Reverse

Name: yddU [C]

Synonym: Ping_0483

Alternate gene names: 119944258

Gene position: 612108-610888 (Counterclockwise)

Preceding gene: 119944259

Following gene: 119944238

Centisome position: 13.42

GC content: 46.36

Gene sequence:

>1221_bases
ATGGTTAGTAAATCGTCCCTCAACATTTTGATCATCGATGATCAGCCCTTTATGCTCAAACTGCTTGAACATATGTTGAT
TAGCTTGGGATTTAATCAGCCGACAATTTATGACAACGGGAAAAAGGCCTTAGCATCGTTAGATAGTGCGAGTAGTCAAA
CGAATTTAATCCTGCTCGATCTCAATATGCCAGAAATGGACGGCATAGAGGTCGTACGACACTTGGCTGGAAAATCTTAT
TCCGGCAGTATTATTCTGGTGAGTGGCGAAGATGCTCGTATGTTGCAATCCGTAGAAAGACTGGTGAGGGCGCACAACAT
ACCGCTGCTTGGCTCCTTGCAAAAACCCATTAATCCAAAAGATTTGTCGATCCTCATCGATAGCTGGGAGCCCCCCAGCT
ATGTAAATCCACCGGCCGTGAAGAAAATTTATGGTGCCGACGATGTGCGTGCAGCCATAGTCAATCACCAACTAGTGAAT
TACTACCAGCCCAAAGTAGATGTGGCCAACGGCAAGGTAATGGGCGTCGAGACCCTAGTGCGCTGGCGTCACCCCCAAGA
TGGACTGGTTTTTCCAGATCAATTTATTGGTGTGGCTGAAGATAATGGACTGATTAACGACCTGACACGAGAGGTCATCA
GTGACGCATTCTCTCAAACCAAAATTTGGCTAGATGCGGGCTTGAGTCTGCGAGTAGCTGTTAACCTTTCCATGGAAAAT
CTTGATTCACTGGAGTTTACAGATTACGTCACGACGGCTGCCGCCACTGCAGGTATCATACCGGACGACATAGTATTGGA
AGTAACTGAAAGCCGGTTAATTAAGAGTTTAACTACGCCAATGGAAGTCCTCACCCGTTTGCGCCTAAAACGTTTCCACT
TATCGATTGACGACTTTGGCACCGGGCATTCATCGCTGATGCAGTTGCTAGACTTGCCCTTTAATGAGCTTAAAGTCGAT
CAAGGCTTTGTCCATGGTGCCGCCAGCAACGAAAAATTATGCAGTATTTATAACGCAAGCCTGAGTTTGGCTCAACAACT
CGGCATGAAATCAGTGGCGGAAGGTGTAGAGGATCAAGCTGACTGGGATTTTATACGTAGCTCAGGCTGCGACCTCGCCC
AAGGTTACTACATCGCGAAACCCATGCCAGCAGATGAAATTCACGATTGGATCATAAAATGGGAAGCGAACAGGGTAAAT
CTCATTACACCATATGATTAG

Upstream 100 bases:

>100_bases
CGTTTTGAGGTGGAAATGGCCACCGTTAAAAAATATTTAGATAAGCTATAAGCAACTGAAATTAAATATAATAATATAAA
AATATAAAAAGGAAGTAATT

Downstream 100 bases:

>100_bases
TTTTTTATAGCTGGAGTAATAAAAAATGCCCACCCTACTGATAGCAACAGATAACACTGAAGAAGCCTGAGAAGTCAAAG
ACGTACTGGCCAAAAATTTA

Product: cyclic-di-GMP regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MVSKSSLNILIIDDQPFMLKLLEHMLISLGFNQPTIYDNGKKALASLDSASSQTNLILLDLNMPEMDGIEVVRHLAGKSY
SGSIILVSGEDARMLQSVERLVRAHNIPLLGSLQKPINPKDLSILIDSWEPPSYVNPPAVKKIYGADDVRAAIVNHQLVN
YYQPKVDVANGKVMGVETLVRWRHPQDGLVFPDQFIGVAEDNGLINDLTREVISDAFSQTKIWLDAGLSLRVAVNLSMEN
LDSLEFTDYVTTAAATAGIIPDDIVLEVTESRLIKSLTTPMEVLTRLRLKRFHLSIDDFGTGHSSLMQLLDLPFNELKVD
QGFVHGAASNEKLCSIYNASLSLAQQLGMKSVAEGVEDQADWDFIRSSGCDLAQGYYIAKPMPADEIHDWIIKWEANRVN
LITPYD

Sequences:

>Translated_406_residues
MVSKSSLNILIIDDQPFMLKLLEHMLISLGFNQPTIYDNGKKALASLDSASSQTNLILLDLNMPEMDGIEVVRHLAGKSY
SGSIILVSGEDARMLQSVERLVRAHNIPLLGSLQKPINPKDLSILIDSWEPPSYVNPPAVKKIYGADDVRAAIVNHQLVN
YYQPKVDVANGKVMGVETLVRWRHPQDGLVFPDQFIGVAEDNGLINDLTREVISDAFSQTKIWLDAGLSLRVAVNLSMEN
LDSLEFTDYVTTAAATAGIIPDDIVLEVTESRLIKSLTTPMEVLTRLRLKRFHLSIDDFGTGHSSLMQLLDLPFNELKVD
QGFVHGAASNEKLCSIYNASLSLAQQLGMKSVAEGVEDQADWDFIRSSGCDLAQGYYIAKPMPADEIHDWIIKWEANRVN
LITPYD
>Mature_406_residues
MVSKSSLNILIIDDQPFMLKLLEHMLISLGFNQPTIYDNGKKALASLDSASSQTNLILLDLNMPEMDGIEVVRHLAGKSY
SGSIILVSGEDARMLQSVERLVRAHNIPLLGSLQKPINPKDLSILIDSWEPPSYVNPPAVKKIYGADDVRAAIVNHQLVN
YYQPKVDVANGKVMGVETLVRWRHPQDGLVFPDQFIGVAEDNGLINDLTREVISDAFSQTKIWLDAGLSLRVAVNLSMEN
LDSLEFTDYVTTAAATAGIIPDDIVLEVTESRLIKSLTTPMEVLTRLRLKRFHLSIDDFGTGHSSLMQLLDLPFNELKVD
QGFVHGAASNEKLCSIYNASLSLAQQLGMKSVAEGVEDQADWDFIRSSGCDLAQGYYIAKPMPADEIHDWIIKWEANRVN
LITPYD

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=244, Percent_Identity=34.8360655737705, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI1787541, Length=249, Percent_Identity=38.1526104417671, Blast_Score=151, Evalue=9e-38,
Organism=Escherichia coli, GI1788502, Length=251, Percent_Identity=33.4661354581673, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=31.1475409836066, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI226510982, Length=250, Percent_Identity=32, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI1786507, Length=264, Percent_Identity=30.3030303030303, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=32.7659574468085, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=31.7991631799163, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=29.2682926829268, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787055, Length=253, Percent_Identity=31.6205533596838, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI1788849, Length=210, Percent_Identity=30.952380952381, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87082096, Length=250, Percent_Identity=25.2, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 45004; Mature: 45004

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSKSSLNILIIDDQPFMLKLLEHMLISLGFNQPTIYDNGKKALASLDSASSQTNLILLD
CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHCCCCCCCEEEEE
LNMPEMDGIEVVRHLAGKSYSGSIILVSGEDARMLQSVERLVRAHNIPLLGSLQKPINPK
CCCCCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCC
DLSILIDSWEPPSYVNPPAVKKIYGADDVRAAIVNHQLVNYYQPKVDVANGKVMGVETLV
CEEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCEEEHHHHH
RWRHPQDGLVFPDQFIGVAEDNGLINDLTREVISDAFSQTKIWLDAGLSLRVAVNLSMEN
HHCCCCCCCCCCHHHCEEECCCCHHHHHHHHHHHHHHHHCEEEEECCCEEEEEEEECHHC
LDSLEFTDYVTTAAATAGIIPDDIVLEVTESRLIKSLTTPMEVLTRLRLKRFHLSIDDFG
CCCCHHHHHHHHHHHHCCCCCCHHHEEEHHHHHHHHHCCHHHHHHHHHHHHHEECCCCCC
TGHSSLMQLLDLPFNELKVDQGFVHGAASNEKLCSIYNASLSLAQQLGMKSVAEGVEDQA
CCHHHHHHHHHCCHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCC
DWDFIRSSGCDLAQGYYIAKPMPADEIHDWIIKWEANRVNLITPYD
CHHHHHCCCCCHHCCEEEECCCCHHHHHHEEEEEECCEEEEEECCC
>Mature Secondary Structure
MVSKSSLNILIIDDQPFMLKLLEHMLISLGFNQPTIYDNGKKALASLDSASSQTNLILLD
CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHCCCCCCCEEEEE
LNMPEMDGIEVVRHLAGKSYSGSIILVSGEDARMLQSVERLVRAHNIPLLGSLQKPINPK
CCCCCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEECCCCCCCCC
DLSILIDSWEPPSYVNPPAVKKIYGADDVRAAIVNHQLVNYYQPKVDVANGKVMGVETLV
CEEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCEEEHHHHH
RWRHPQDGLVFPDQFIGVAEDNGLINDLTREVISDAFSQTKIWLDAGLSLRVAVNLSMEN
HHCCCCCCCCCCHHHCEEECCCCHHHHHHHHHHHHHHHHCEEEEECCCEEEEEEEECHHC
LDSLEFTDYVTTAAATAGIIPDDIVLEVTESRLIKSLTTPMEVLTRLRLKRFHLSIDDFG
CCCCHHHHHHHHHHHHCCCCCCHHHEEEHHHHHHHHHCCHHHHHHHHHHHHHEECCCCCC
TGHSSLMQLLDLPFNELKVDQGFVHGAASNEKLCSIYNASLSLAQQLGMKSVAEGVEDQA
CCHHHHHHHHHCCHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCC
DWDFIRSSGCDLAQGYYIAKPMPADEIHDWIIKWEANRVNLITPYD
CHHHHHCCCCCHHCCEEEECCCCHHHHHHEEEEEECCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]