| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is 119944110
Identifier: 119944110
GI number: 119944110
Start: 425409
End: 426062
Strand: Reverse
Name: 119944110
Synonym: Ping_0325
Alternate gene names: NA
Gene position: 426062-425409 (Counterclockwise)
Preceding gene: 119944111
Following gene: 119944108
Centisome position: 9.34
GC content: 29.05
Gene sequence:
>654_bases ATGAGAATAGAAATAGGTAGGAAGGTTGAGAAATACATAAAAAGCAGACTAAGTCGTTTAAAATTAAAACAAAATGATTT TACAATTATCTCTAACAATTGTTGGGGAACTTTTATGTATAAAAAATTTGCCCTTCCTTACACAACTCCCTTTGTAAATT TATTAATTTTTTCTCCTGATTATATTGAATTATTGGAAAACTTAACGCCTGAACTGTTAACCAAAATTTCCTTTATAGAG CATGAGAACTCTCAACATAAAGAGGAGATGGTTAGACTCAATATCTATAAAAAAAACTACCCAATTGGTATTTTAGATAA TAAATATGAACTGCATTTTTTACATTATCAATCACAACAAGATGCAAAAGATAAATGGCTGAAAAGATTGGCAAGAATGA ATTTTGATAAATTAATCGTTAAATTCAGTGCATCATTGAAATTTGAAGACAATATGGCCGAACGGTTTGATGATTTGAAC TTTAAAAACAAAATCTGCTTTACAGCAACAGCGTTTCCAAACTTAAAAAGTATCGTGTCCATGCAAGCATTTAAAGGTAA AGAGACAGTGATTGATGAGTGGAAGCATACAACAAAAAAAGAATTTGACCTTATTAATTTTATTAACAATATACAAAGGG AAGATAAAGCGTAA
Upstream 100 bases:
>100_bases AGTTTTACTAACGAGCATTTTCAATATCTGGATAAACCAAGGGGGAAATGGACCCATAAAAAGCCTTCTGAGCTATTAAT AAAAGAGATGGACCAAAAAA
Downstream 100 bases:
>100_bases ACAGAGTTAACTTTATTTTTAGGAATAAAAAACCGCTTTAAATAAAGCGGTTTTTATTATCTGACCACAAGACTAAAAGC TATTTCCACGCTTTCCAGGC
Product: exopolysaccharide biosynthesis protein-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 217; Mature: 217
Protein sequence:
>217_residues MRIEIGRKVEKYIKSRLSRLKLKQNDFTIISNNCWGTFMYKKFALPYTTPFVNLLIFSPDYIELLENLTPELLTKISFIE HENSQHKEEMVRLNIYKKNYPIGILDNKYELHFLHYQSQQDAKDKWLKRLARMNFDKLIVKFSASLKFEDNMAERFDDLN FKNKICFTATAFPNLKSIVSMQAFKGKETVIDEWKHTTKKEFDLINFINNIQREDKA
Sequences:
>Translated_217_residues MRIEIGRKVEKYIKSRLSRLKLKQNDFTIISNNCWGTFMYKKFALPYTTPFVNLLIFSPDYIELLENLTPELLTKISFIE HENSQHKEEMVRLNIYKKNYPIGILDNKYELHFLHYQSQQDAKDKWLKRLARMNFDKLIVKFSASLKFEDNMAERFDDLN FKNKICFTATAFPNLKSIVSMQAFKGKETVIDEWKHTTKKEFDLINFINNIQREDKA >Mature_217_residues MRIEIGRKVEKYIKSRLSRLKLKQNDFTIISNNCWGTFMYKKFALPYTTPFVNLLIFSPDYIELLENLTPELLTKISFIE HENSQHKEEMVRLNIYKKNYPIGILDNKYELHFLHYQSQQDAKDKWLKRLARMNFDKLIVKFSASLKFEDNMAERFDDLN FKNKICFTATAFPNLKSIVSMQAFKGKETVIDEWKHTTKKEFDLINFINNIQREDKA
Specific function: Unknown
COG id: COG3955
COG function: function code M; Exopolysaccharide biosynthesis protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015037 [H]
Pfam domain/function: PF08942 DUF1919 [H]
EC number: NA
Molecular weight: Translated: 25968; Mature: 25968
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIEIGRKVEKYIKSRLSRLKLKQNDFTIISNNCWGTFMYKKFALPYTTPFVNLLIFSPD CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEHHHHHHCCCCCCHHHEEEEECCH YIELLENLTPELLTKISFIEHENSQHKEEMVRLNIYKKNYPIGILDNKYELHFLHYQSQQ HHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHEEEEECCCCEEEECCCEEEEEEEECCCC DAKDKWLKRLARMNFDKLIVKFSASLKFEDNMAERFDDLNFKNKICFTATAFPNLKSIVS CHHHHHHHHHHHCCHHHHHHHHHCCCEECCCHHHHHHCCCCCCCEEEEEECCCCHHHHHH MQAFKGKETVIDEWKHTTKKEFDLINFINNIQREDKA HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRIEIGRKVEKYIKSRLSRLKLKQNDFTIISNNCWGTFMYKKFALPYTTPFVNLLIFSPD CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEHHHHHHCCCCCCHHHEEEEECCH YIELLENLTPELLTKISFIEHENSQHKEEMVRLNIYKKNYPIGILDNKYELHFLHYQSQQ HHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHEEEEECCCCEEEECCCEEEEEEEECCCC DAKDKWLKRLARMNFDKLIVKFSASLKFEDNMAERFDDLNFKNKICFTATAFPNLKSIVS CHHHHHHHHHHHCCHHHHHHHHHCCCEECCCHHHHHHCCCCCCCEEEEEECCCCHHHHHH MQAFKGKETVIDEWKHTTKKEFDLINFINNIQREDKA HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]