| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is slt [H]
Identifier: 119944078
GI number: 119944078
Start: 381835
End: 383748
Strand: Direct
Name: slt [H]
Synonym: Ping_0293
Alternate gene names: 119944078
Gene position: 381835-383748 (Clockwise)
Preceding gene: 119944077
Following gene: 119944081
Centisome position: 8.37
GC content: 38.61
Gene sequence:
>1914_bases GTGAATAAATTCTTACTACTGTGTTGCGGTTTTTTCTCTCTGACAAGTTTTGTCGCGGCTGATGATCTCGATAAGCAAAG AGAGCTCTACTCTCAGGCTGTTGTTTTACAAGCACAAGGTGAGTGGGAGCAAGCACAAAAAACCGCAGCATTAATCGCTG AATATCCGTTAACTTACCTGCTTGAATTCGAGACTATTAAGGCACATTTTGCTACCAATAATGCAGCAGCGGTGCACGCA TTTATTAACAACAACCCCAACCGCAGTCTTTCTTTAGATTTAGAAAGAGATTATTTACGCTTTTTAGCAAGAAATTACGC CTGGAAGGAATTTTTGGATTTTTATCCGCAATTGCCTAATAGTGAGGATCTCAAATGTAATTACTTCCAAGCAAAAATAA ACCAGGGTAAGACGGAAGAAATTTGGCCTGAATTTAAAAAAACCTGGTTAACGGGAAGCTCCTTACCGCCAGCCTGTGAT AATGTTATTGCGGTTTACCGGGACAATAACACCCTTTCAGAAAAATTAGTTTGGCAACGTTTTAGCTTGGCTTATCAAAA TAATTCCCCTGCATTAATGCGTTATTTAACTACTTGGATGAAAGGGGATAATAGGGTGCTCGCAACCCAATTATATGCGT TATATAAAAAACCTGAGAGCTTGCTGAACAGTGAATTATTTCAAAGTAGAACGCAGGCTAGTTTTCTATTTTTACAAATG AGTATTAAACGCTTAGCTCGAGTCGATCTGAATTCGGCAATGGATTTGTTTAATCGTTATGAGAAAAAAATCCCCTTTAC TGCCTCTGAAAGCCAGACATTAAAAAAATATTTTGCATTACGAACCCTATTGTATGAGGTGGAGAGTCAACTGCCATGGT TAGATAAAGAGCTTGTCTCTTTAGATGATGACGGATTGTTTGAACTGCGAATTCGCTATGCAATAAAATTGGATAATTGG AAAGATATTGAATATTGGTTAAACGTCTTGCCGGAAAGGTTACAAGAAAAAGACAAATGGATATATTGGCAAGCGCGTGT ATTAGAAAATAAAAAACAGCAGAAACAAGCCGATAAACTCTATCTTAAGATTGCCGGGCAAAGACGTTATTATAGTTTTC TGGCGGCTCAAAAGCTGGGCCTTGATTATCAGCTTAATGCCAAGTTAGTCAGTGAAAAGAGTGACAGCTTAAAGATGAAA AAAGCAGATCTTGCTTATATTGGAGAGTTAGCATACCAAAAACACAATGCACTTTTAAAGCGGGAATGGTATGCACTATT AAATAATAACGATAAAAATACACAACTGCAGTTAGGCTTGTACGCATACCAAAAGGGTTGGGCACATCTGTCTGTGATGG CCAGTATTAACAGCAAGAGTTGGGATGCGTTGAATATACGTTTCCCCAAGGTAAAATCTGGCTTATTTGCAAATACGGCA AATCAATACCAATTGGAGCCAACTTATATTTATGCTCTGACTCGTCGGGAGAGTGCTTTTGACGAGTATGCTCAATCTCG AGTGGGTGCCAGTGGTTATATGCAGCTGATGCCTGCGACTGCAAAAGAAACGGCGCAAATGATAGGCATGAAAGATTATA AAAATCAGGCACAGTTAAATGATGGTGCTATTAATGTGCAGTTAGGCACAGCCTATTTTGATATGTTATTAAAACGTTAC AGTGGTAATCGAATCCTTGCTACAGCGGCTTATAATGCGGGTCCTCATCGCGTCGATAGCTGGAAAGGTAAAGCAGGGCA AAGCTTGGAGATGGACAGTTGGATTGAAACCATTCCCTATAAAGAAACGCGTAACTATGTAAAAAATGTATTAGCGTATA ATGTTATCTACCAACACATTTTAGATCAATCGCGAGAATTTTTTAATAAAACAGAACTTAATACGCGTTATTAG
Upstream 100 bases:
>100_bases TCGAATGCAACTCACGCCTTGTTAGTACTCATTTTTCCTTCGCAATCATTGATCACTTCATTAATTCTTTTGGTATAACT AACCTTTTTGGAGAGCTTTT
Downstream 100 bases:
>100_bases CTCAGAGGTTATTTTTACAGGATCAGAAAGGCTTAATATTATCCAAGCCTTTCATGATCACCAGCACTGATCATTGTTTG TATCCGATGCGTCATAATGT
Product: lytic transglycosylase, catalytic
Products: 1,6-Anhydrobond [C]
Alternate protein names: Exomuramidase; Peptidoglycan lytic exotransglycosylase; Slt70 [H]
Number of amino acids: Translated: 637; Mature: 637
Protein sequence:
>637_residues MNKFLLLCCGFFSLTSFVAADDLDKQRELYSQAVVLQAQGEWEQAQKTAALIAEYPLTYLLEFETIKAHFATNNAAAVHA FINNNPNRSLSLDLERDYLRFLARNYAWKEFLDFYPQLPNSEDLKCNYFQAKINQGKTEEIWPEFKKTWLTGSSLPPACD NVIAVYRDNNTLSEKLVWQRFSLAYQNNSPALMRYLTTWMKGDNRVLATQLYALYKKPESLLNSELFQSRTQASFLFLQM SIKRLARVDLNSAMDLFNRYEKKIPFTASESQTLKKYFALRTLLYEVESQLPWLDKELVSLDDDGLFELRIRYAIKLDNW KDIEYWLNVLPERLQEKDKWIYWQARVLENKKQQKQADKLYLKIAGQRRYYSFLAAQKLGLDYQLNAKLVSEKSDSLKMK KADLAYIGELAYQKHNALLKREWYALLNNNDKNTQLQLGLYAYQKGWAHLSVMASINSKSWDALNIRFPKVKSGLFANTA NQYQLEPTYIYALTRRESAFDEYAQSRVGASGYMQLMPATAKETAQMIGMKDYKNQAQLNDGAINVQLGTAYFDMLLKRY SGNRILATAAYNAGPHRVDSWKGKAGQSLEMDSWIETIPYKETRNYVKNVLAYNVIYQHILDQSREFFNKTELNTRY
Sequences:
>Translated_637_residues MNKFLLLCCGFFSLTSFVAADDLDKQRELYSQAVVLQAQGEWEQAQKTAALIAEYPLTYLLEFETIKAHFATNNAAAVHA FINNNPNRSLSLDLERDYLRFLARNYAWKEFLDFYPQLPNSEDLKCNYFQAKINQGKTEEIWPEFKKTWLTGSSLPPACD NVIAVYRDNNTLSEKLVWQRFSLAYQNNSPALMRYLTTWMKGDNRVLATQLYALYKKPESLLNSELFQSRTQASFLFLQM SIKRLARVDLNSAMDLFNRYEKKIPFTASESQTLKKYFALRTLLYEVESQLPWLDKELVSLDDDGLFELRIRYAIKLDNW KDIEYWLNVLPERLQEKDKWIYWQARVLENKKQQKQADKLYLKIAGQRRYYSFLAAQKLGLDYQLNAKLVSEKSDSLKMK KADLAYIGELAYQKHNALLKREWYALLNNNDKNTQLQLGLYAYQKGWAHLSVMASINSKSWDALNIRFPKVKSGLFANTA NQYQLEPTYIYALTRRESAFDEYAQSRVGASGYMQLMPATAKETAQMIGMKDYKNQAQLNDGAINVQLGTAYFDMLLKRY SGNRILATAAYNAGPHRVDSWKGKAGQSLEMDSWIETIPYKETRNYVKNVLAYNVIYQHILDQSREFFNKTELNTRY >Mature_637_residues MNKFLLLCCGFFSLTSFVAADDLDKQRELYSQAVVLQAQGEWEQAQKTAALIAEYPLTYLLEFETIKAHFATNNAAAVHA FINNNPNRSLSLDLERDYLRFLARNYAWKEFLDFYPQLPNSEDLKCNYFQAKINQGKTEEIWPEFKKTWLTGSSLPPACD NVIAVYRDNNTLSEKLVWQRFSLAYQNNSPALMRYLTTWMKGDNRVLATQLYALYKKPESLLNSELFQSRTQASFLFLQM SIKRLARVDLNSAMDLFNRYEKKIPFTASESQTLKKYFALRTLLYEVESQLPWLDKELVSLDDDGLFELRIRYAIKLDNW KDIEYWLNVLPERLQEKDKWIYWQARVLENKKQQKQADKLYLKIAGQRRYYSFLAAQKLGLDYQLNAKLVSEKSDSLKMK KADLAYIGELAYQKHNALLKREWYALLNNNDKNTQLQLGLYAYQKGWAHLSVMASINSKSWDALNIRFPKVKSGLFANTA NQYQLEPTYIYALTRRESAFDEYAQSRVGASGYMQLMPATAKETAQMIGMKDYKNQAQLNDGAINVQLGTAYFDMLLKRY SGNRILATAAYNAGPHRVDSWKGKAGQSLEMDSWIETIPYKETRNYVKNVLAYNVIYQHILDQSREFFNKTELNTRY
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Periplasm. Note=Tightly associated with the murein sacculus (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI87082441, Length=638, Percent_Identity=31.5047021943574, Blast_Score=347, Evalue=1e-96,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016026 - InterPro: IPR008258 - InterPro: IPR012289 - InterPro: IPR008939 - InterPro: IPR000189 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 74271; Mature: 74271
Theoretical pI: Translated: 9.39; Mature: 9.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKFLLLCCGFFSLTSFVAADDLDKQRELYSQAVVLQAQGEWEQAQKTAALIAEYPLTYL CCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHCCHHEE LEFETIKAHFATNNAAAVHAFINNNPNRSLSLDLERDYLRFLARNYAWKEFLDFYPQLPN EEEHHHEEEEECCCCEEEEEEECCCCCCEEEEECCHHHHHHHHHCCCHHHHHHHCCCCCC SEDLKCNYFQAKINQGKTEEIWPEFKKTWLTGSSLPPACDNVIAVYRDNNTLSEKLVWQR CCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH FSLAYQNNSPALMRYLTTWMKGDNRVLATQLYALYKKPESLLNSELFQSRTQASFLFLQM HHHEECCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH SIKRLARVDLNSAMDLFNRYEKKIPFTASESQTLKKYFALRTLLYEVESQLPWLDKELVS HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHC LDDDGLFELRIRYAIKLDNWKDIEYWLNVLPERLQEKDKWIYWQARVLENKKQQKQADKL CCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHCHHHHHHHHHE YLKIAGQRRYYSFLAAQKLGLDYQLNAKLVSEKSDSLKMKKADLAYIGELAYQKHNALLK EEEEECCHHHHHHHHHHHHCCCEEECCCEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHH REWYALLNNNDKNTQLQLGLYAYQKGWAHLSVMASINSKSWDALNIRFPKVKSGLFANTA HHHHHHHCCCCCCCEEEEEEEHHHCCCEEEEEEEECCCCCCCEEEEECCCCCCCCEECCC NQYQLEPTYIYALTRRESAFDEYAQSRVGASGYMQLMPATAKETAQMIGMKDYKNQAQLN CCEEECCEEEEEEECCHHHHHHHHHHHCCCCCHHEECCCHHHHHHHHHCCHHCCCCCCCC DGAINVQLGTAYFDMLLKRYSGNRILATAAYNAGPHRVDSWKGKAGQSLEMDSWIETIPY CCEEEEEEHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCC KETRNYVKNVLAYNVIYQHILDQSREFFNKTELNTRY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MNKFLLLCCGFFSLTSFVAADDLDKQRELYSQAVVLQAQGEWEQAQKTAALIAEYPLTYL CCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHCCHHEE LEFETIKAHFATNNAAAVHAFINNNPNRSLSLDLERDYLRFLARNYAWKEFLDFYPQLPN EEEHHHEEEEECCCCEEEEEEECCCCCCEEEEECCHHHHHHHHHCCCHHHHHHHCCCCCC SEDLKCNYFQAKINQGKTEEIWPEFKKTWLTGSSLPPACDNVIAVYRDNNTLSEKLVWQR CCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH FSLAYQNNSPALMRYLTTWMKGDNRVLATQLYALYKKPESLLNSELFQSRTQASFLFLQM HHHEECCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH SIKRLARVDLNSAMDLFNRYEKKIPFTASESQTLKKYFALRTLLYEVESQLPWLDKELVS HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHC LDDDGLFELRIRYAIKLDNWKDIEYWLNVLPERLQEKDKWIYWQARVLENKKQQKQADKL CCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHCHHHHHHHHHE YLKIAGQRRYYSFLAAQKLGLDYQLNAKLVSEKSDSLKMKKADLAYIGELAYQKHNALLK EEEEECCHHHHHHHHHHHHCCCEEECCCEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHH REWYALLNNNDKNTQLQLGLYAYQKGWAHLSVMASINSKSWDALNIRFPKVKSGLFANTA HHHHHHHCCCCCCCEEEEEEEHHHCCCEEEEEEEECCCCCCCEEEEECCCCCCCCEECCC NQYQLEPTYIYALTRRESAFDEYAQSRVGASGYMQLMPATAKETAQMIGMKDYKNQAQLN CCEEECCEEEEEEECCHHHHHHHHHHHCCCCCHHEECCCHHHHHHHHHCCHHCCCCCCCC DGAINVQLGTAYFDMLLKRYSGNRILATAAYNAGPHRVDSWKGKAGQSLEMDSWIETIPY CCEEEEEEHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCC KETRNYVKNVLAYNVIYQHILDQSREFFNKTELNTRY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]