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The map label for this gene is yiaD [H]

Identifier: 119944065

GI number: 119944065

Start: 366571

End: 367218

Strand: Reverse

Name: yiaD [H]

Synonym: Ping_0280

Alternate gene names: 119944065

Gene position: 367218-366571 (Counterclockwise)

Preceding gene: 119944066

Following gene: 119944064

Centisome position: 8.05

GC content: 43.98

Gene sequence:

>648_bases
ATGAACAAAAAATTAGTTACAGCATTAATGGTCGTCACACTTTTAAGCGGATGTGTGAATCGTCAAAATGCAACAACAGG
TGAACAAGAAATGAATACCGCGACAAAATCGGCTATTGGTGGTGCAATTGCCGGGGCGCTTGCGGGTGCTGCGACAGGCA
AAAAAAATGGCGCATTATTTGGCGCGGTTGGTGGTGCTGCCATCGGTGGCGGGGTAGGTTATTACTTTGACCAACAAGAA
GCAGCACTACGCCAGGAATTATTAAATTCCGGAGTGCAGGTCAAGCGTGTTGGCGAATATGAACTGCAGCTTATAATGGC
GGATGGCATTGGTTTTGATACGGGGAATTATCAGTTAAGCGGTAGTATTTTTTCAACTTTAAATGGCGTTGCAAAAGTAC
TTAATGAGTATCCAAAATCATCATTAAGAATCATTGGCCATACGGACAGTGTTGGCAGTTCAGAATCAAACTTAACCCTT
TCTGAGCGTCGTGCTGAATCTGTGTCTAATTACCTTATGCAGCGCAACGTAAAATCGGGTCGCCTAAGCACATTAGGCTA
TGGTGAACGTCGCCCGATAGCAACTAATGATACTCCTTATGGCCGTGCGGCTAATCGTCGTGTTGAAATTAACATTATAG
CTAACTAA

Upstream 100 bases:

>100_bases
TTATGTATATGGAGTATTATTAAAACGATATCAAAGTCCTATCGTTAAGAATTTTCTTATTAAAGTTCTACGCGTTATCT
CAAAAAACAGGAAGCAAATC

Downstream 100 bases:

>100_bases
GTGTTTTTGATCTTTTAGCGGTTCGCTATTCTAATTTAAAAAAACTAATTAAAACAATAATTTTAAGCTCAGCACTAAGC
TAACATGTCGTCAAACCGCC

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MNKKLVTALMVVTLLSGCVNRQNATTGEQEMNTATKSAIGGAIAGALAGAATGKKNGALFGAVGGAAIGGGVGYYFDQQE
AALRQELLNSGVQVKRVGEYELQLIMADGIGFDTGNYQLSGSIFSTLNGVAKVLNEYPKSSLRIIGHTDSVGSSESNLTL
SERRAESVSNYLMQRNVKSGRLSTLGYGERRPIATNDTPYGRAANRRVEINIIAN

Sequences:

>Translated_215_residues
MNKKLVTALMVVTLLSGCVNRQNATTGEQEMNTATKSAIGGAIAGALAGAATGKKNGALFGAVGGAAIGGGVGYYFDQQE
AALRQELLNSGVQVKRVGEYELQLIMADGIGFDTGNYQLSGSIFSTLNGVAKVLNEYPKSSLRIIGHTDSVGSSESNLTL
SERRAESVSNYLMQRNVKSGRLSTLGYGERRPIATNDTPYGRAANRRVEINIIAN
>Mature_215_residues
MNKKLVTALMVVTLLSGCVNRQNATTGEQEMNTATKSAIGGAIAGALAGAATGKKNGALFGAVGGAAIGGGVGYYFDQQE
AALRQELLNSGVQVKRVGEYELQLIMADGIGFDTGNYQLSGSIFSTLNGVAKVLNEYPKSSLRIIGHTDSVGSSESNLTL
SERRAESVSNYLMQRNVKSGRLSTLGYGERRPIATNDTPYGRAANRRVEINIIAN

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=222, Percent_Identity=43.6936936936937, Blast_Score=124, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22624; Mature: 22624

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKLVTALMVVTLLSGCVNRQNATTGEQEMNTATKSAIGGAIAGALAGAATGKKNGALF
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
GAVGGAAIGGGVGYYFDQQEAALRQELLNSGVQVKRVGEYELQLIMADGIGFDTGNYQLS
ECCCCHHHCCCCCEEECHHHHHHHHHHHHCCCEEEEECCEEEEEEEECCCCCCCCCEEEC
GSIFSTLNGVAKVLNEYPKSSLRIIGHTDSVGSSESNLTLSERRAESVSNYLMQRNVKSG
CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
RLSTLGYGERRPIATNDTPYGRAANRRVEINIIAN
CEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MNKKLVTALMVVTLLSGCVNRQNATTGEQEMNTATKSAIGGAIAGALAGAATGKKNGALF
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
GAVGGAAIGGGVGYYFDQQEAALRQELLNSGVQVKRVGEYELQLIMADGIGFDTGNYQLS
ECCCCHHHCCCCCEEECHHHHHHHHHHHHCCCEEEEECCEEEEEEEECCCCCCCCCEEEC
GSIFSTLNGVAKVLNEYPKSSLRIIGHTDSVGSSESNLTLSERRAESVSNYLMQRNVKSG
CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
RLSTLGYGERRPIATNDTPYGRAANRRVEINIIAN
CEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]