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The map label for this gene is cspE [H]

Identifier: 119944064

GI number: 119944064

Start: 365395

End: 365601

Strand: Reverse

Name: cspE [H]

Synonym: Ping_0279

Alternate gene names: 119944064

Gene position: 365601-365395 (Counterclockwise)

Preceding gene: 119944065

Following gene: 119944060

Centisome position: 8.02

GC content: 38.65

Gene sequence:

>207_bases
ATGTCTAAAGTTCAAGGTACAGTTAAATGGTTCAACGAGTCTAAAGGTTTTGGTTTTATCGAGCAAGCTTCTGGTCCAGA
CGTATTCGCTCACTTTAGCGCTATCTCAAGCGAAGGTTTTAAAACTCTTGCTGAAGGCCAAAAAGTAGAATTTACTATTA
CTCAAGGTCAAAAAGGCCCAAATGCTGAAAATATCGTAGCTATCTAG

Upstream 100 bases:

>100_bases
TTATTAATAATACCTCGCTCTGTAGTTTTTAAGTTCCAGTCTGTTTTTACGCTATTCATGTCTTTTAAAGACACTTTTAT
TAAAATTACAGGGTATTATT

Downstream 100 bases:

>100_bases
TTTGCTGTGATATTTTAGCTTCTATAAGCTGAGTAATATTTGAGAATGGTAAGCCTTCACAGGTTTACCATTTTTTTTGT
CTATTCGAAAATAAAATACT

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: CSP-E [H]

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MSKVQGTVKWFNESKGFGFIEQASGPDVFAHFSAISSEGFKTLAEGQKVEFTITQGQKGPNAENIVAI

Sequences:

>Translated_68_residues
MSKVQGTVKWFNESKGFGFIEQASGPDVFAHFSAISSEGFKTLAEGQKVEFTITQGQKGPNAENIVAI
>Mature_67_residues
SKVQGTVKWFNESKGFGFIEQASGPDVFAHFSAISSEGFKTLAEGQKVEFTITQGQKGPNAENIVAI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=68.1159420289855, Blast_Score=97, Evalue=2e-22,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=69.5652173913043, Blast_Score=94, Evalue=2e-21,
Organism=Escherichia coli, GI2367114, Length=68, Percent_Identity=58.8235294117647, Blast_Score=82, Evalue=7e-18,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=58.2089552238806, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1787839, Length=66, Percent_Identity=56.0606060606061, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1787834, Length=68, Percent_Identity=58.8235294117647, Blast_Score=77, Evalue=3e-16,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=52.3076923076923, Blast_Score=72, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7323; Mature: 7192

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVQGTVKWFNESKGFGFIEQASGPDVFAHFSAISSEGFKTLAEGQKVEFTITQGQKGP
CCCCCCEEEEECCCCCCCEEECCCCCCEEEHHHHHCCCCCHHHCCCCEEEEEEECCCCCC
NAENIVAI
CCCCEEEC
>Mature Secondary Structure 
SKVQGTVKWFNESKGFGFIEQASGPDVFAHFSAISSEGFKTLAEGQKVEFTITQGQKGP
CCCCCEEEEECCCCCCCEEECCCCCCEEEHHHHHCCCCCHHHCCCCEEEEEEECCCCCC
NAENIVAI
CCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]